Wall clock time and date at job start Tue Mar 31 2020 19:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46903 * 2 1 4 4 C 1.53002 * 109.46977 * 119.99412 * 2 1 3 5 5 N 1.46500 * 109.46618 * 175.00195 * 4 2 1 6 6 C 1.46503 * 120.00132 * 270.00133 * 5 4 2 7 7 C 1.36939 * 120.00190 * 90.00430 * 5 4 2 8 8 H 1.08004 * 119.99754 * 340.44548 * 7 5 4 9 9 C 1.38805 * 120.00251 * 160.16277 * 7 5 4 10 10 N 1.31617 * 120.00050 * 344.50867 * 9 7 5 11 11 Si 1.86801 * 120.00021 * 164.49887 * 9 7 5 12 12 H 1.48502 * 109.46962 * 90.00562 * 11 9 7 13 13 H 1.48498 * 109.47526 * 210.00421 * 11 9 7 14 14 H 1.48503 * 109.47416 * 330.00554 * 11 9 7 15 15 N 1.46487 * 109.47262 * 240.00116 * 2 1 3 16 16 C 1.34778 * 120.00479 * 84.99674 * 15 2 1 17 17 O 1.21283 * 119.99801 * 359.97438 * 16 15 2 18 18 C 1.50706 * 120.00079 * 180.02562 * 16 15 2 19 19 N 1.46496 * 109.46758 * 180.02562 * 18 16 15 20 20 N 1.40318 * 126.32408 * 269.68725 * 19 18 16 21 21 C 1.28868 * 108.11961 * 180.08459 * 20 19 18 22 22 N 1.38014 * 108.81813 * 1.12350 * 21 20 19 23 23 C 1.34304 * 108.33044 * 358.31534 * 22 21 20 24 24 O 1.21810 * 126.32519 * 181.52830 * 23 22 21 25 25 C 1.46718 * 124.16747 * 177.45674 * 22 21 20 26 26 C 1.53289 * 108.64876 * 19.60134 * 25 22 21 27 27 C 1.53224 * 109.37359 * 308.15014 * 26 25 22 28 28 C 1.51110 * 127.47278 * 181.73933 * 21 20 19 29 29 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47401 * 300.00238 * 1 2 3 31 31 H 1.08995 * 109.47378 * 60.00126 * 1 2 3 32 32 H 1.09001 * 109.46919 * 55.00925 * 4 2 1 33 33 H 1.08991 * 109.47393 * 295.00038 * 4 2 1 34 34 H 1.09001 * 109.47084 * 264.86777 * 6 5 4 35 35 H 1.08995 * 109.46838 * 24.86829 * 6 5 4 36 36 H 1.08999 * 109.46901 * 144.87342 * 6 5 4 37 37 H 0.97007 * 119.99828 * 179.97438 * 10 9 7 38 38 H 0.97004 * 119.99999 * 264.99984 * 15 2 1 39 39 H 1.08998 * 109.46586 * 299.99512 * 18 16 15 40 40 H 1.08994 * 109.47188 * 60.00073 * 18 16 15 41 41 H 1.08996 * 109.61131 * 139.35348 * 25 22 21 42 42 H 1.09003 * 109.60862 * 259.69297 * 25 22 21 43 43 H 1.09005 * 109.48829 * 68.12008 * 26 25 22 44 44 H 1.09004 * 109.48676 * 188.17190 * 26 25 22 45 45 H 1.08998 * 109.54407 * 190.53624 * 27 26 25 46 46 H 1.09006 * 109.54179 * 310.80191 * 27 26 25 47 47 H 1.09003 * 109.75401 * 78.00121 * 28 21 20 48 48 H 1.09009 * 109.78800 * 317.29543 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5000 -0.8262 1.1906 6 6 4.1259 -1.9918 0.5613 7 6 4.2798 0.1651 1.7240 8 1 3.8624 1.1459 1.8978 9 6 5.6051 -0.0923 2.0468 10 7 6.0321 -1.3343 2.1333 11 14 6.7826 1.3240 2.3581 12 1 6.7598 1.6789 3.7999 13 1 8.1576 0.9191 1.9698 14 1 6.3667 2.4999 1.5521 15 7 2.0183 -0.6905 -1.1961 16 6 2.1470 -0.0182 -2.3571 17 8 1.8581 1.1584 -2.4117 18 6 2.6489 -0.7289 -3.5877 19 7 2.6988 0.2126 -4.7089 20 7 1.6672 0.4701 -5.6247 21 6 2.0870 1.3541 -6.4631 22 7 3.3904 1.6819 -6.1492 23 6 3.7486 0.9891 -5.0558 24 8 4.8217 1.0495 -4.4828 25 6 4.2133 2.6191 -6.9219 26 6 3.2882 3.5007 -7.7685 27 6 2.3308 2.6115 -8.5688 28 6 1.3189 1.9735 -7.6076 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 4.3655 -2.7320 1.3247 35 1 3.4375 -2.4268 -0.1632 36 1 5.0403 -1.6837 0.0543 37 1 6.9583 -1.5142 2.3585 38 1 2.2490 -1.6317 -1.1525 39 1 3.6480 -1.1213 -3.3985 40 1 1.9760 -1.5507 -3.8325 41 1 4.7925 3.2438 -6.2420 42 1 4.8883 2.0628 -7.5724 43 1 2.7138 4.1576 -7.1152 44 1 3.8857 4.1015 -8.4542 45 1 1.8025 3.2157 -9.3062 46 1 2.8968 1.8291 -9.0745 47 1 0.6414 2.7373 -7.2259 48 1 0.7498 1.2040 -8.1294 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483402394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:36 Heat of formation + Delta-G solvation = 6.835266 kcal Electronic energy + Delta-G solvation = -30327.082454 eV Core-core repulsion = 26225.906392 eV Total energy + Delta-G solvation = -4101.176062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.66465 -40.87803 -38.87306 -38.24554 -37.72378 -35.85391 -34.52447 -33.68795 -33.11915 -31.95593 -29.90177 -28.85824 -28.03583 -27.45874 -25.45316 -23.81261 -23.64328 -22.99134 -21.94322 -21.48246 -20.69141 -18.88930 -18.69248 -18.42343 -17.63239 -17.29261 -17.02159 -16.92304 -16.59876 -16.06620 -15.65426 -15.53661 -15.28175 -15.22933 -15.17582 -14.90420 -14.50803 -14.28431 -14.01161 -13.83078 -13.68585 -13.30480 -13.26519 -13.11118 -12.93390 -12.83047 -12.77885 -12.56027 -12.33815 -12.09898 -12.05962 -11.91361 -11.89316 -11.85852 -11.81888 -11.44602 -11.37682 -10.77219 -10.66929 -10.05453 -9.67252 -8.80644 -7.88012 -5.31139 0.56503 0.93443 1.35883 1.39873 1.45741 1.48316 1.54662 1.95457 2.30798 2.45328 3.20515 3.24561 3.55326 3.61609 3.70723 3.73885 3.82768 3.92559 4.06167 4.11305 4.31073 4.34088 4.36674 4.43436 4.47326 4.54639 4.73249 4.75134 4.78304 4.86191 4.88621 4.89347 4.96789 4.99175 5.05220 5.13351 5.17133 5.27206 5.34490 5.39738 5.55996 5.59742 5.62738 5.72727 6.27775 6.52452 6.53551 6.85843 7.12268 7.21583 7.85481 8.23497 9.13973 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013714 B = 0.003169 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.238087 B = 8834.252371 C =10051.446492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.126 3.874 3 H 0.036 0.964 4 C 0.144 3.856 5 N -0.614 5.614 6 C 0.180 3.820 7 C -0.258 4.258 8 H 0.059 0.941 9 C -0.048 4.048 10 N -0.931 5.931 11 Si 0.953 3.047 12 H -0.276 1.276 13 H -0.291 1.291 14 H -0.288 1.288 15 N -0.692 5.692 16 C 0.493 3.507 17 O -0.585 6.585 18 C 0.142 3.858 19 N -0.444 5.444 20 N -0.296 5.296 21 C 0.284 3.716 22 N -0.554 5.554 23 C 0.632 3.368 24 O -0.602 6.602 25 C 0.116 3.884 26 C -0.129 4.129 27 C -0.116 4.116 28 C -0.038 4.038 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.040 0.960 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.008 0.992 35 H 0.042 0.958 36 H 0.007 0.993 37 H 0.248 0.752 38 H 0.409 0.591 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.079 0.921 47 H 0.116 0.884 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.588 2.967 -25.682 29.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.054 0.946 4 C 0.017 3.983 5 N -0.337 5.337 6 C 0.035 3.965 7 C -0.388 4.388 8 H 0.077 0.923 9 C -0.244 4.244 10 N -0.578 5.578 11 Si 0.783 3.217 12 H -0.203 1.203 13 H -0.217 1.217 14 H -0.214 1.214 15 N -0.345 5.345 16 C 0.278 3.722 17 O -0.465 6.465 18 C 0.017 3.983 19 N -0.262 5.262 20 N -0.118 5.118 21 C 0.006 3.994 22 N -0.282 5.282 23 C 0.331 3.669 24 O -0.480 6.480 25 C -0.004 4.004 26 C -0.167 4.167 27 C -0.154 4.154 28 C -0.078 4.078 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.057 0.943 38 H 0.247 0.753 39 H 0.142 0.858 40 H 0.183 0.817 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.090 0.910 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.098 0.902 47 H 0.134 0.866 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.614 3.119 -24.905 28.554 hybrid contribution 2.171 0.764 0.927 2.481 sum -11.443 3.884 -23.978 26.851 Atomic orbital electron populations 1.21978 0.93159 1.03167 1.01872 1.21673 0.94504 0.96205 0.85766 0.94554 1.21234 0.83065 0.99458 0.94534 1.44052 1.01050 1.22245 1.66327 1.20598 0.94069 0.88099 0.93726 1.19364 0.93505 0.91133 1.34833 0.92331 1.25507 0.99770 0.97969 1.01122 1.70195 1.15539 1.18143 1.53900 0.85484 0.78802 0.79516 0.77940 1.20279 1.21739 1.21418 1.45871 1.65717 1.14333 1.08542 1.21318 0.77463 0.87397 0.85979 1.90650 1.52214 1.17854 1.85766 1.21409 1.06254 0.90226 0.80373 1.48429 1.10868 1.39821 1.27054 1.76691 1.12451 1.19914 1.02701 1.25441 0.83557 0.92679 0.97691 1.46294 1.14376 1.41364 1.26147 1.16932 0.85052 0.82213 0.82685 1.91059 1.24873 1.71650 1.60382 1.22204 0.93725 0.90393 0.94067 1.22033 0.98248 0.97532 0.98882 1.21761 0.96527 0.99835 0.97266 1.20905 0.96849 1.01307 0.88719 0.90113 0.90632 0.94081 0.90655 0.92044 0.97415 0.93953 0.97419 0.94285 0.75304 0.85790 0.81731 0.90997 0.88607 0.91034 0.85984 0.86041 0.90225 0.86610 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.01 9.48 71.98 0.68 -3.32 16 2 C 0.13 4.59 2.88 44.99 0.13 4.72 16 3 H 0.04 1.67 7.58 -2.38 -0.02 1.65 16 4 C 0.14 5.54 5.29 86.38 0.46 5.99 16 5 N -0.61 -30.59 2.78 -726.94 -2.02 -32.62 16 6 C 0.18 8.57 8.52 127.77 1.09 9.66 16 7 C -0.26 -14.89 9.67 84.03 0.81 -14.08 16 8 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 9 C -0.05 -2.86 5.06 84.86 0.43 -2.43 16 10 N -0.93 -56.48 10.67 21.65 0.23 -56.25 16 11 Si 0.95 48.85 29.58 68.60 2.03 50.88 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 13 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 14 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 15 N -0.69 -23.49 4.52 -442.54 -2.00 -25.49 16 16 C 0.49 18.54 7.86 87.66 0.69 19.23 16 17 O -0.58 -27.47 16.09 -3.04 -0.05 -27.52 16 18 C 0.14 4.30 6.87 85.64 0.59 4.88 16 19 N -0.44 -15.06 3.12 -482.00 -1.50 -16.57 16 20 N -0.30 -8.36 12.51 -49.12 -0.61 -8.98 16 21 C 0.28 6.27 7.73 137.75 1.06 7.33 16 22 N -0.55 -14.90 3.13 -644.28 -2.02 -16.91 16 23 C 0.63 23.95 8.64 179.10 1.55 25.50 16 24 O -0.60 -28.34 17.82 -4.70 -0.08 -28.42 16 25 C 0.12 2.08 6.88 86.43 0.59 2.67 16 26 C -0.13 -1.02 5.94 30.77 0.18 -0.84 16 27 C -0.12 -0.46 5.96 30.82 0.18 -0.28 16 28 C -0.04 -0.33 6.32 30.13 0.19 -0.14 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.08 2.43 8.07 -2.39 -0.02 2.42 16 33 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.01 0.40 7.41 -2.39 -0.02 0.38 16 35 H 0.04 1.55 5.76 -2.39 -0.01 1.53 16 36 H 0.01 0.38 7.19 -2.39 -0.02 0.37 16 37 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 38 H 0.41 11.70 6.20 -92.70 -0.58 11.13 16 39 H 0.12 3.72 8.12 -2.39 -0.02 3.70 16 40 H 0.17 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 0.70 8.10 -2.38 -0.02 0.68 16 44 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 46 H 0.08 0.31 8.11 -2.38 -0.02 0.29 16 47 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.13 0.58 8.14 -2.38 -0.02 0.56 16 Total: -1.00 -92.91 390.84 3.00 -89.91 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.39 Total: 13.08 kcal Atomic # 6 Polarization: 50.26 SS G_CDS: 8.64 Total: 58.90 kcal Atomic # 7 Polarization: -148.89 SS G_CDS: -7.93 Total: -156.82 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.13 Total: -55.94 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -92.91 3.00 -89.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483402394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.741 kcal (2) G-P(sol) polarization free energy of solvation -92.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds