Wall clock time and date at job start Tue Mar 31 2020 20:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.46992 * 269.72101 * 8 6 4 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.46997 * 179.97438 * 10 9 8 12 12 C 1.46907 * 110.99767 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47032 * 180.02562 * 12 11 10 14 14 O 1.21295 * 120.00059 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00074 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00091 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.38943 * 119.99758 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00573 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47112 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47292 * 119.99664 * 20 18 16 23 23 H 1.48492 * 109.47427 * 240.00166 * 20 18 16 24 24 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 25 25 C 1.34940 * 126.03723 * 35.00037 * 24 2 1 26 26 C 1.35318 * 107.74670 * 179.97438 * 25 24 2 27 27 C 1.39878 * 107.91661 * 359.97438 * 26 25 24 28 28 N 1.30830 * 108.20404 * 359.74110 * 27 26 25 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 32 32 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 33 33 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 34 34 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 35 35 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 36 36 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 37 37 H 1.09000 * 109.47214 * 300.00285 * 9 8 6 38 38 H 1.09008 * 109.47142 * 59.99450 * 9 8 6 39 39 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 40 40 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 41 41 H 1.00896 * 111.00048 * 56.05166 * 11 10 9 42 42 H 1.09001 * 109.47206 * 299.99683 * 12 11 10 43 43 H 1.08992 * 109.47049 * 60.00128 * 12 11 10 44 44 H 0.96995 * 119.99810 * 359.97438 * 15 13 12 45 45 H 0.97001 * 120.00354 * 180.02562 * 19 18 16 46 46 H 1.08001 * 126.12703 * 359.95401 * 25 24 2 47 47 H 1.07997 * 126.04431 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89426 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5392 -0.3441 -4.0716 10 6 4.0489 -1.0660 -5.3206 11 7 5.3397 -0.4928 -5.7248 12 6 5.8606 -1.1626 -6.9241 13 6 7.1829 -0.5496 -7.3074 14 8 7.6455 0.3564 -6.6468 15 7 7.8508 -1.0074 -8.3848 16 6 9.0535 -0.4494 -8.7338 17 1 9.4658 0.3568 -8.1451 18 6 9.7423 -0.9217 -9.8442 19 7 9.2413 -1.9036 -10.5596 20 14 11.3806 -0.1609 -10.3202 21 1 11.7225 0.9190 -9.3600 22 1 12.4380 -1.2031 -10.2892 23 1 11.2841 0.4057 -11.6893 24 7 2.0184 -0.6907 1.1961 25 6 1.4404 -1.7560 1.7893 26 6 2.1969 -2.0932 2.8593 27 6 3.2747 -1.2037 2.9218 28 7 3.1719 -0.3662 1.9219 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.1874 0.6358 -2.6194 33 1 1.0224 1.5985 -1.7375 34 1 1.1130 1.4628 -3.5100 35 1 2.3200 -2.0011 -3.4322 36 1 1.4741 -0.8191 -4.4598 37 1 3.4138 0.7164 -4.2902 38 1 4.2596 -0.4656 -3.2626 39 1 4.1744 -2.1263 -5.1015 40 1 3.3287 -0.9448 -6.1296 41 1 6.0064 -0.5344 -4.9687 42 1 5.9990 -2.2236 -6.7165 43 1 5.1526 -1.0421 -7.7439 44 1 7.4806 -1.7316 -8.9132 45 1 9.7224 -2.2336 -11.3345 46 1 0.5357 -2.2507 1.4678 47 1 2.0030 -2.9054 3.5441 48 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483453877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:46 Heat of formation + Delta-G solvation = 22.599942 kcal Electronic energy + Delta-G solvation = -28101.045803 eV Core-core repulsion = 24000.553349 eV Total energy + Delta-G solvation = -4100.492454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.66106 -40.23390 -38.28996 -36.71056 -35.72081 -34.97045 -33.85328 -31.92552 -31.16429 -30.34277 -29.79615 -27.76307 -27.09952 -25.53427 -24.47481 -23.33696 -21.77508 -21.33191 -21.07223 -19.65853 -19.19245 -17.86380 -17.74559 -17.72744 -16.59556 -15.95804 -15.87990 -15.71140 -15.05412 -14.98805 -14.56757 -14.31187 -14.26283 -14.21035 -13.95498 -13.79148 -13.57942 -13.38245 -13.20453 -13.05431 -12.88849 -12.69416 -12.34909 -12.21479 -12.03653 -11.91824 -11.66956 -11.46885 -11.36660 -11.05569 -10.93256 -10.79759 -10.39493 -10.32757 -10.20794 -9.63896 -9.50359 -9.14790 -8.84390 -8.44282 -8.04036 -7.93965 -6.40050 -3.80775 1.54274 1.98686 2.10354 2.62263 2.65291 3.17822 3.28151 3.35837 3.77997 3.93002 3.98581 4.11894 4.21233 4.34604 4.45136 4.54021 4.66858 4.72358 4.76234 4.86164 4.94937 5.07876 5.10745 5.11788 5.18588 5.24342 5.26969 5.32219 5.35056 5.50168 5.52787 5.65303 5.76650 5.81426 5.90613 5.99543 6.05274 6.20128 6.29700 6.38842 6.63599 6.85785 7.24398 7.45280 7.57187 7.65961 7.67908 8.08588 8.63347 9.19836 9.56317 10.07951 10.77825 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.001635 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.720426 B =17119.299035 C =17881.497834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.145 3.855 3 H 0.128 0.872 4 C 0.500 3.500 5 O -0.515 6.515 6 N -0.611 5.611 7 C 0.068 3.932 8 C 0.118 3.882 9 C -0.132 4.132 10 C 0.063 3.937 11 N -0.670 5.670 12 C 0.051 3.949 13 C 0.441 3.559 14 O -0.583 6.583 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.104 0.896 18 C 0.021 3.979 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.281 1.281 24 N -0.357 5.357 25 C 0.066 3.934 26 C -0.274 4.274 27 C 0.048 3.952 28 N -0.290 5.290 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.350 0.650 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.169 0.831 47 H 0.147 0.853 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.540 0.770 21.074 33.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 H 0.145 0.855 4 C 0.285 3.715 5 O -0.389 6.389 6 N -0.345 5.345 7 C -0.075 4.075 8 C -0.005 4.005 9 C -0.171 4.171 10 C -0.067 4.067 11 N -0.302 5.302 12 C -0.082 4.082 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.757 3.243 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.139 5.139 25 C -0.079 4.079 26 C -0.303 4.303 27 C -0.139 4.139 28 N -0.110 5.110 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.169 0.831 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -24.576 2.346 20.340 31.988 hybrid contribution 0.537 -1.730 -0.029 1.811 sum -24.039 0.616 20.311 31.476 Atomic orbital electron populations 1.22428 0.90621 1.04615 1.05439 1.21047 0.96127 0.97674 0.81323 0.85463 1.20758 0.80964 0.85165 0.84574 1.90790 1.36368 1.25754 1.85943 1.47785 1.51309 1.29726 1.05672 1.22100 0.94312 0.87106 1.03964 1.21516 0.95712 0.97615 0.85641 1.21887 0.96327 1.01103 0.97776 1.21840 0.92586 0.95782 0.96517 1.60073 1.04835 1.57380 1.07955 1.21671 0.96625 0.95762 0.94145 1.19828 0.86855 0.86778 0.83906 1.90524 1.69746 1.32112 1.54322 1.41869 1.19799 1.33625 1.24834 1.19764 0.95901 1.16942 1.10195 0.87864 1.25265 1.00003 0.96549 0.96208 1.69620 1.39695 1.26637 1.18423 0.85792 0.81173 0.78924 0.78412 1.19217 1.20779 1.20743 1.48186 1.19562 1.24702 1.21466 1.22388 0.99910 0.90703 0.94928 1.21480 0.99291 1.06182 1.03328 1.23905 0.99067 0.93970 0.96929 1.77396 1.01600 1.24661 1.07317 0.88296 0.90915 0.90043 0.91705 0.90806 0.89974 0.89755 0.89937 0.90681 0.91580 0.95408 0.91035 0.83108 0.93870 0.89595 0.77458 0.91946 0.81411 0.83486 0.79938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 8.47 37.16 0.31 -0.30 16 2 C 0.14 1.11 2.93 -69.08 -0.20 0.91 16 3 H 0.13 0.85 7.41 -51.93 -0.38 0.47 16 4 C 0.50 5.18 7.15 -10.98 -0.08 5.10 16 5 O -0.51 -7.82 15.99 5.56 0.09 -7.74 16 6 N -0.61 -4.76 2.87 -181.57 -0.52 -5.28 16 7 C 0.07 0.25 8.80 59.85 0.53 0.78 16 8 C 0.12 1.03 5.41 -4.04 -0.02 1.01 16 9 C -0.13 -1.48 5.80 -26.73 -0.15 -1.64 16 10 C 0.06 0.80 5.68 -3.83 -0.02 0.78 16 11 N -0.67 -11.45 6.13 -115.06 -0.70 -12.16 16 12 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 13 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 14 O -0.58 -16.42 15.78 5.54 0.09 -16.33 16 15 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 16 C -0.30 -8.52 9.68 -14.94 -0.14 -8.66 16 17 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -24.93 13.05 55.50 0.72 -24.20 16 20 Si 0.93 21.42 29.55 -169.99 -5.02 16.39 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 N -0.36 -3.73 3.02 -55.99 -0.17 -3.90 16 25 C 0.07 0.59 10.57 -17.23 -0.18 0.41 16 26 C -0.27 -2.45 10.80 -40.01 -0.43 -2.89 16 27 C 0.05 0.49 12.03 -17.36 -0.21 0.28 16 28 N -0.29 -3.65 12.58 30.63 0.39 -3.26 16 29 H 0.10 0.15 4.51 -51.93 -0.23 -0.08 16 30 H 0.07 0.26 7.15 -51.93 -0.37 -0.11 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.11 6.95 -51.93 -0.36 -0.25 16 33 H 0.07 0.18 6.01 -51.93 -0.31 -0.14 16 34 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 35 H 0.08 0.88 7.41 -51.93 -0.38 0.49 16 36 H 0.08 0.52 8.07 -51.93 -0.42 0.11 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.35 6.37 8.43 -39.29 -0.33 6.04 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 44 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 46 H 0.17 0.97 7.26 -52.49 -0.38 0.59 16 47 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 48 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 400.14 15.07 6.03 6.03 Total: -1.00 -38.30 400.14 -7.22 -45.52 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.24 Total: 11.84 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -0.82 Total: 7.87 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.34 Total: -63.57 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.18 Total: -24.07 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.30 -7.22 -45.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483453877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.117 kcal (2) G-P(sol) polarization free energy of solvation -38.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds