Wall clock time and date at job start Tue Mar 31 2020 20:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 5 5 O 1.21281 * 119.99699 * 239.99570 * 4 2 1 6 6 N 1.34773 * 120.00080 * 60.00061 * 4 2 1 7 7 C 1.46499 * 120.00036 * 359.72107 * 6 4 2 8 8 C 1.46506 * 119.99969 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.46992 * 269.72101 * 8 6 4 10 10 C 1.52996 * 109.47210 * 179.97438 * 9 8 6 11 11 N 1.46897 * 109.46997 * 179.97438 * 10 9 8 12 12 C 1.46907 * 110.99767 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47032 * 180.02562 * 12 11 10 14 14 O 1.21295 * 120.00059 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00074 * 180.02562 * 13 12 11 16 16 C 1.37098 * 120.00091 * 179.97438 * 15 13 12 17 17 H 1.08001 * 119.99943 * 0.02562 * 16 15 13 18 18 C 1.38943 * 119.99758 * 179.97438 * 16 15 13 19 19 N 1.31408 * 120.00573 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47112 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47292 * 119.99664 * 20 18 16 23 23 H 1.48492 * 109.47427 * 240.00166 * 20 18 16 24 24 N 1.46500 * 109.47277 * 120.00513 * 2 1 3 25 25 C 1.34940 * 126.03723 * 35.00037 * 24 2 1 26 26 C 1.35318 * 107.74670 * 179.97438 * 25 24 2 27 27 C 1.39878 * 107.91661 * 359.97438 * 26 25 24 28 28 N 1.30830 * 108.20404 * 359.74110 * 27 26 25 29 29 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 30 30 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 32 32 H 1.09003 * 109.47269 * 270.27384 * 7 6 4 33 33 H 1.08994 * 109.47173 * 30.28203 * 7 6 4 34 34 H 1.09005 * 109.47077 * 150.28374 * 7 6 4 35 35 H 1.09000 * 109.46803 * 29.71536 * 8 6 4 36 36 H 1.09000 * 109.47214 * 149.72329 * 8 6 4 37 37 H 1.09000 * 109.47214 * 300.00285 * 9 8 6 38 38 H 1.09008 * 109.47142 * 59.99450 * 9 8 6 39 39 H 1.08997 * 109.47037 * 300.00424 * 10 9 8 40 40 H 1.09000 * 109.46839 * 60.00324 * 10 9 8 41 41 H 1.00896 * 111.00048 * 56.05166 * 11 10 9 42 42 H 1.09001 * 109.47206 * 299.99683 * 12 11 10 43 43 H 1.08992 * 109.47049 * 60.00128 * 12 11 10 44 44 H 0.96995 * 119.99810 * 359.97438 * 15 13 12 45 45 H 0.97001 * 120.00354 * 180.02562 * 19 18 16 46 46 H 1.08001 * 126.12703 * 359.95401 * 25 24 2 47 47 H 1.07997 * 126.04431 * 179.97438 * 26 25 24 48 48 H 1.08003 * 125.89426 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1194 6 7 1.7067 -0.2497 -2.4546 7 6 0.8595 0.9378 -2.5889 8 6 2.1945 -0.9406 -3.6509 9 6 3.5392 -0.3441 -4.0716 10 6 4.0489 -1.0660 -5.3206 11 7 5.3397 -0.4928 -5.7248 12 6 5.8606 -1.1626 -6.9241 13 6 7.1829 -0.5496 -7.3074 14 8 7.6455 0.3564 -6.6468 15 7 7.8508 -1.0074 -8.3848 16 6 9.0535 -0.4494 -8.7338 17 1 9.4658 0.3568 -8.1451 18 6 9.7423 -0.9217 -9.8442 19 7 9.2413 -1.9036 -10.5596 20 14 11.3806 -0.1609 -10.3202 21 1 11.7225 0.9190 -9.3600 22 1 12.4380 -1.2031 -10.2892 23 1 11.2841 0.4057 -11.6893 24 7 2.0184 -0.6907 1.1961 25 6 1.4404 -1.7560 1.7893 26 6 2.1969 -2.0932 2.8593 27 6 3.2747 -1.2037 2.9218 28 7 3.1719 -0.3662 1.9219 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.1874 0.6358 -2.6194 33 1 1.0224 1.5985 -1.7375 34 1 1.1130 1.4628 -3.5100 35 1 2.3200 -2.0011 -3.4322 36 1 1.4741 -0.8191 -4.4598 37 1 3.4138 0.7164 -4.2902 38 1 4.2596 -0.4656 -3.2626 39 1 4.1744 -2.1263 -5.1015 40 1 3.3287 -0.9448 -6.1296 41 1 6.0064 -0.5344 -4.9687 42 1 5.9990 -2.2236 -6.7165 43 1 5.1526 -1.0421 -7.7439 44 1 7.4806 -1.7316 -8.9132 45 1 9.7224 -2.2336 -11.3345 46 1 0.5357 -2.2507 1.4678 47 1 2.0030 -2.9054 3.5441 48 1 4.0589 -1.2103 3.6643 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483453877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:46 Heat of formation + Delta-G solvation = -7.301608 kcal Electronic energy + Delta-G solvation = -28102.342431 eV Core-core repulsion = 24000.553349 eV Total energy + Delta-G solvation = -4101.789083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34035 -40.95785 -40.19591 -37.73684 -36.69175 -35.97881 -35.60851 -33.35834 -32.83189 -31.05673 -30.43551 -28.78618 -27.88208 -26.80226 -25.59150 -24.49552 -22.74677 -22.06692 -21.78527 -21.09283 -20.30667 -19.93600 -18.39970 -18.38084 -17.90729 -17.23319 -16.96615 -16.59277 -16.51566 -15.99036 -15.88978 -15.57052 -15.45218 -15.10966 -14.92152 -14.73697 -14.49873 -14.36339 -14.17562 -13.73733 -13.61577 -13.56396 -13.45310 -13.35262 -13.05935 -12.94501 -12.81958 -12.68286 -12.49740 -12.43209 -12.39208 -12.13110 -11.75399 -11.66480 -11.54579 -11.17046 -10.41618 -10.37767 -10.04999 -9.79624 -9.53614 -9.40725 -8.49619 -5.98785 0.85270 1.34769 1.35283 1.40078 1.41284 1.54656 1.95139 2.00723 2.01222 2.27376 2.89485 3.17163 3.23943 3.47052 3.51849 3.73799 3.92396 3.95150 4.07534 4.11376 4.18437 4.26378 4.34293 4.41683 4.46257 4.51335 4.54300 4.58099 4.64482 4.68626 4.69853 4.76176 4.84522 4.90372 5.03787 5.11175 5.13492 5.16126 5.38324 5.43904 5.71180 5.85293 6.02323 6.06940 6.24210 6.27524 6.56759 6.73681 6.95493 7.09310 7.52114 8.07665 8.67977 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.001635 C = 0.001565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.720426 B =17119.299035 C =17881.497834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.133 0.867 4 C 0.494 3.506 5 O -0.576 6.576 6 N -0.605 5.605 7 C 0.056 3.944 8 C 0.122 3.878 9 C -0.121 4.121 10 C 0.066 3.934 11 N -0.685 5.685 12 C 0.065 3.935 13 C 0.435 3.565 14 O -0.626 6.626 15 N -0.572 5.572 16 C -0.336 4.336 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.995 3.005 21 H -0.275 1.275 22 H -0.270 1.270 23 H -0.268 1.268 24 N -0.365 5.365 25 C 0.062 3.938 26 C -0.285 4.285 27 C 0.037 3.963 28 N -0.342 5.342 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.031 0.969 39 H 0.031 0.969 40 H 0.095 0.905 41 H 0.338 0.662 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.397 0.603 45 H 0.278 0.722 46 H 0.198 0.802 47 H 0.169 0.831 48 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.005 0.837 20.434 34.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.151 0.849 4 C 0.281 3.719 5 O -0.454 6.454 6 N -0.337 5.337 7 C -0.085 4.085 8 C -0.001 4.001 9 C -0.160 4.160 10 C -0.064 4.064 11 N -0.317 5.317 12 C -0.067 4.067 13 C 0.223 3.777 14 O -0.513 6.513 15 N -0.209 5.209 16 C -0.466 4.466 17 H 0.096 0.904 18 C -0.213 4.213 19 N -0.560 5.560 20 Si 0.818 3.182 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.193 1.193 24 N -0.148 5.148 25 C -0.084 4.084 26 C -0.314 4.314 27 C -0.149 4.149 28 N -0.163 5.163 29 H 0.142 0.858 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.136 0.864 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.049 0.951 40 H 0.114 0.886 41 H 0.156 0.844 42 H 0.081 0.919 43 H 0.129 0.871 44 H 0.231 0.769 45 H 0.088 0.912 46 H 0.214 0.786 47 H 0.187 0.813 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -27.104 2.425 19.670 33.577 hybrid contribution 1.263 -1.742 0.162 2.158 sum -25.841 0.683 19.833 32.581 Atomic orbital electron populations 1.22471 0.87096 1.05336 1.07201 1.21348 0.98663 0.97079 0.79355 0.84923 1.21312 0.80108 0.84553 0.85947 1.90755 1.39208 1.28576 1.86895 1.47892 1.50807 1.30377 1.04600 1.22475 0.95171 0.85786 1.05055 1.21451 0.95186 0.96478 0.86987 1.21771 0.96932 1.01245 0.96033 1.21947 0.90794 0.95856 0.97760 1.60125 1.06067 1.58237 1.07252 1.21554 0.93503 0.96172 0.95512 1.20912 0.88354 0.85885 0.82578 1.90490 1.71314 1.34051 1.55403 1.41929 1.19531 1.33870 1.25557 1.19711 0.97735 1.17756 1.11362 0.90440 1.26063 1.03058 0.96684 0.95459 1.69673 1.40867 1.26888 1.18560 0.84849 0.77027 0.78100 0.78209 1.19932 1.19545 1.19329 1.48446 1.19090 1.25307 1.21940 1.22963 1.00642 0.90171 0.94581 1.21861 0.98949 1.06629 1.03988 1.24390 0.99914 0.93797 0.96820 1.77298 1.03498 1.26612 1.08846 0.85781 0.90687 0.88947 0.88612 0.89402 0.89268 0.91625 0.86422 0.90511 0.94980 0.95051 0.88625 0.84420 0.91869 0.87094 0.76873 0.91206 0.78553 0.81303 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.47 71.98 0.61 -0.11 16 2 C 0.14 2.05 2.93 44.25 0.13 2.18 16 3 H 0.13 1.70 7.41 -2.39 -0.02 1.68 16 4 C 0.49 10.11 7.15 87.66 0.63 10.73 16 5 O -0.58 -18.25 15.99 -3.03 -0.05 -18.30 16 6 N -0.60 -8.48 2.87 -846.74 -2.43 -10.91 16 7 C 0.06 0.23 8.80 127.77 1.12 1.36 16 8 C 0.12 1.96 5.41 86.38 0.47 2.43 16 9 C -0.12 -2.65 5.80 30.59 0.18 -2.47 16 10 C 0.07 1.57 5.68 86.30 0.49 2.06 16 11 N -0.69 -23.14 6.13 -517.94 -3.17 -26.32 16 12 C 0.06 2.33 6.17 85.56 0.53 2.86 16 13 C 0.44 21.62 7.82 87.66 0.69 22.30 16 14 O -0.63 -36.37 15.78 -3.08 -0.05 -36.42 16 15 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 16 C -0.34 -19.62 9.68 84.04 0.81 -18.81 16 17 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 18 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 19 N -0.92 -50.22 13.05 21.66 0.28 -49.94 16 20 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 N -0.37 -7.64 3.02 -331.05 -1.00 -8.64 16 25 C 0.06 1.07 10.57 83.54 0.88 1.95 16 26 C -0.29 -5.01 10.80 21.99 0.24 -4.78 16 27 C 0.04 0.77 12.03 85.24 1.03 1.79 16 28 N -0.34 -8.95 12.58 -57.02 -0.72 -9.66 16 29 H 0.12 -0.12 4.51 -2.39 -0.01 -0.13 16 30 H 0.07 0.34 7.15 -2.39 -0.02 0.32 16 31 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 -0.13 6.95 -2.39 -0.02 -0.15 16 33 H 0.09 0.15 6.01 -2.39 -0.01 0.13 16 34 H 0.09 0.31 8.07 -2.38 -0.02 0.29 16 35 H 0.07 1.34 7.41 -2.39 -0.02 1.32 16 36 H 0.12 1.08 8.07 -2.39 -0.02 1.06 16 37 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.34 12.66 8.43 -89.70 -0.76 11.91 16 42 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 44 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 45 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.20 1.95 7.26 -2.91 -0.02 1.92 16 47 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 48 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -87.46 400.14 1.04 -86.42 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: -0.50 Total: 38.62 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 8.27 Total: 21.25 kcal Atomic # 7 Polarization: -128.67 SS G_CDS: -8.66 Total: -137.33 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.10 Total: -54.72 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -87.46 1.04 -86.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483453877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.118 kcal (2) G-P(sol) polarization free energy of solvation -87.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds