Wall clock time and date at job start Tue Mar 31 2020 20:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99952 * 2 1 3 5 5 O 1.21278 * 120.00240 * 120.00385 * 4 2 1 6 6 N 1.34780 * 120.00249 * 300.00184 * 4 2 1 7 7 C 1.46502 * 119.99699 * 359.97438 * 6 4 2 8 8 C 1.46500 * 120.00188 * 180.02562 * 6 4 2 9 9 C 1.52995 * 109.47101 * 89.99879 * 8 6 4 10 10 C 1.53002 * 109.47198 * 179.97438 * 9 8 6 11 11 N 1.46906 * 109.47255 * 179.97438 * 10 9 8 12 12 C 1.46898 * 110.99808 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46975 * 180.02562 * 12 11 10 14 14 O 1.21293 * 119.99727 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99907 * 180.02562 * 13 12 11 16 16 C 1.37100 * 119.99659 * 180.02562 * 15 13 12 17 17 H 1.07995 * 120.00073 * 359.97438 * 16 15 13 18 18 C 1.38949 * 119.99673 * 180.02562 * 16 15 13 19 19 N 1.31408 * 120.00125 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99795 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47048 * 59.99719 * 20 18 16 22 22 H 1.48501 * 109.47071 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47186 * 299.99576 * 20 18 16 24 24 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 25 25 C 1.34949 * 126.03579 * 325.00408 * 24 2 1 26 26 C 1.35318 * 107.74539 * 179.97438 * 25 24 2 27 27 C 1.39867 * 107.92181 * 359.97438 * 26 25 24 28 28 N 1.30841 * 108.20183 * 359.74201 * 27 26 25 29 29 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 31 31 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 32 32 H 1.08995 * 109.47386 * 90.00307 * 7 6 4 33 33 H 1.08998 * 109.47238 * 210.00186 * 7 6 4 34 34 H 1.09002 * 109.47312 * 329.99896 * 7 6 4 35 35 H 1.08999 * 109.46628 * 209.99856 * 8 6 4 36 36 H 1.08991 * 109.47048 * 329.99991 * 8 6 4 37 37 H 1.09001 * 109.47582 * 300.00277 * 9 8 6 38 38 H 1.09002 * 109.47604 * 59.99656 * 9 8 6 39 39 H 1.08993 * 109.47076 * 299.99860 * 10 9 8 40 40 H 1.09001 * 109.46646 * 60.00190 * 10 9 8 41 41 H 1.00901 * 110.99654 * 56.04814 * 11 10 9 42 42 H 1.09003 * 109.46965 * 300.00084 * 12 11 10 43 43 H 1.08995 * 109.47583 * 60.00102 * 12 11 10 44 44 H 0.96999 * 120.00092 * 359.97438 * 15 13 12 45 45 H 0.97001 * 120.00023 * 180.02562 * 19 18 16 46 46 H 1.07994 * 126.12773 * 359.97438 * 25 24 2 47 47 H 1.08000 * 126.03884 * 179.97438 * 26 25 24 48 48 H 1.07996 * 125.90295 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8649 0.9415 2.5890 8 6 2.1954 -0.9403 3.6508 9 6 3.5430 -0.3473 4.0670 10 6 4.0531 -1.0678 5.3166 11 7 5.3474 -0.4988 5.7159 12 6 5.8692 -1.1682 6.9149 13 6 7.1944 -0.5587 7.2938 14 8 7.6586 0.3440 6.6299 15 7 7.8642 -1.0175 8.3696 16 6 9.0695 -0.4627 8.7145 17 1 9.4824 0.3417 8.1239 18 6 9.7602 -0.9360 9.8234 19 7 9.2580 -1.9151 10.5417 20 14 11.4028 -0.1806 10.2929 21 1 11.2199 1.2659 10.5747 22 1 11.9307 -0.8576 11.5046 23 1 12.3634 -0.3491 9.1732 24 7 2.0184 -0.6906 -1.1961 25 6 1.4403 -1.7559 -1.7894 26 6 2.1963 -2.0923 -2.8601 27 6 3.2730 -1.2018 -2.9236 28 7 3.1642 -0.3575 -1.9300 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.1832 0.6441 2.6221 33 1 1.1227 1.4667 3.5086 34 1 1.0288 1.6003 1.7362 35 1 1.4775 -0.8150 4.4613 36 1 2.3169 -2.0014 3.4337 37 1 4.2610 -0.4724 3.2565 38 1 3.4216 0.7140 4.2840 39 1 3.3352 -0.9422 6.1270 40 1 4.1746 -2.1291 5.0999 41 1 5.2755 0.4973 5.8598 42 1 5.1640 -1.0433 7.7367 43 1 6.0029 -2.2301 6.7091 44 1 7.4931 -1.7397 8.9002 45 1 9.7400 -2.2453 11.3160 46 1 0.5362 -2.2511 -1.4674 47 1 2.0025 -2.9048 -3.5447 48 1 4.0566 -1.2075 -3.6668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483453884.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:49 Heat of formation + Delta-G solvation = 23.147697 kcal Electronic energy + Delta-G solvation = -28096.829071 eV Core-core repulsion = 23996.360369 eV Total energy + Delta-G solvation = -4100.468702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64302 -40.21976 -38.28949 -36.70874 -35.71344 -34.96410 -33.85013 -31.92422 -31.16297 -30.32383 -29.78347 -27.76919 -27.09224 -25.53107 -24.46930 -23.34029 -21.77397 -21.31763 -21.06125 -19.64613 -19.18996 -17.86604 -17.72061 -17.71862 -16.57196 -16.07010 -15.85142 -15.67536 -15.03094 -14.86272 -14.63577 -14.31137 -14.25657 -14.22620 -13.94329 -13.77884 -13.58899 -13.37306 -13.25938 -13.04510 -12.89220 -12.63529 -12.32785 -12.23789 -12.00772 -11.87577 -11.71732 -11.46673 -11.37086 -11.01442 -10.91412 -10.79049 -10.42530 -10.37470 -10.19409 -9.61895 -9.48071 -9.14225 -8.82549 -8.43831 -8.03018 -7.93656 -6.39607 -3.80424 1.56083 2.00106 2.12172 2.63149 2.67320 3.21940 3.27205 3.32000 3.78924 3.93226 3.99647 4.11971 4.21897 4.34418 4.45595 4.53760 4.68169 4.72061 4.75740 4.84920 4.95917 5.04950 5.08834 5.11374 5.21889 5.25284 5.26117 5.35818 5.36727 5.43161 5.54551 5.63627 5.78530 5.79797 5.93868 6.01264 6.03983 6.23736 6.30717 6.40736 6.65163 6.86677 7.24708 7.47197 7.57051 7.67841 7.69149 8.08406 8.63691 9.19889 9.56470 10.08255 10.78103 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.020226 B = 0.001636 C = 0.001566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.018611 B =17109.545690 C =17875.140364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.145 3.855 3 H 0.127 0.873 4 C 0.500 3.500 5 O -0.511 6.511 6 N -0.612 5.612 7 C 0.069 3.931 8 C 0.118 3.882 9 C -0.132 4.132 10 C 0.064 3.936 11 N -0.669 5.669 12 C 0.051 3.949 13 C 0.440 3.560 14 O -0.583 6.583 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.932 3.068 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 N -0.357 5.357 25 C 0.066 3.934 26 C -0.273 4.273 27 C 0.048 3.952 28 N -0.290 5.290 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.169 0.831 47 H 0.147 0.853 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.366 1.916 -19.974 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 H 0.145 0.855 4 C 0.285 3.715 5 O -0.385 6.385 6 N -0.346 5.346 7 C -0.074 4.074 8 C -0.004 4.004 9 C -0.171 4.171 10 C -0.066 4.066 11 N -0.302 5.302 12 C -0.081 4.081 13 C 0.226 3.774 14 O -0.467 6.467 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 N -0.139 5.139 25 C -0.079 4.079 26 C -0.303 4.303 27 C -0.138 4.138 28 N -0.110 5.110 29 H 0.091 0.909 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.186 0.814 47 H 0.165 0.835 48 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -24.762 2.576 -20.025 31.950 hybrid contribution -0.301 -0.508 1.053 1.208 sum -25.063 2.069 -18.972 31.502 Atomic orbital electron populations 1.22426 0.90666 1.04611 1.05381 1.21035 0.96083 0.97673 0.81365 0.85492 1.20748 0.80968 0.85223 0.84535 1.90800 1.36128 1.25687 1.85889 1.47785 1.51563 1.29558 1.05704 1.22083 0.94457 0.87057 1.03826 1.21506 0.95483 0.97870 0.85590 1.21893 0.96470 0.99851 0.98907 1.21844 0.89832 0.99679 0.95279 1.60016 1.25308 1.08964 1.35888 1.21668 0.95704 0.99572 0.91194 1.19824 0.87265 0.86831 0.83489 1.90522 1.69901 1.32606 1.53703 1.41856 1.19587 1.33815 1.24800 1.19663 0.95823 1.17189 1.10265 0.87980 1.25263 0.99978 0.96520 0.96205 1.69605 1.39764 1.26653 1.18353 0.85906 0.81436 0.78966 0.77840 1.19945 1.20979 1.19868 1.48169 1.20005 1.24524 1.21227 1.22386 0.99856 0.90850 0.94848 1.21476 0.99175 1.06265 1.03351 1.23903 0.99030 0.93839 0.97067 1.77402 1.01969 1.24367 1.07230 0.90902 0.88363 0.90061 0.91716 0.90180 0.90802 0.90175 0.89537 0.90426 0.91842 0.95551 0.90947 0.83272 0.93917 0.89578 0.77450 0.91842 0.81419 0.83486 0.79933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.62 8.47 37.16 0.31 -0.31 16 2 C 0.15 1.13 2.93 -69.08 -0.20 0.93 16 3 H 0.13 0.86 7.40 -51.93 -0.38 0.48 16 4 C 0.50 5.24 7.15 -10.98 -0.08 5.17 16 5 O -0.51 -7.91 15.99 5.56 0.09 -7.82 16 6 N -0.61 -4.78 2.87 -181.58 -0.52 -5.30 16 7 C 0.07 0.25 8.80 59.85 0.53 0.77 16 8 C 0.12 1.04 5.41 -4.04 -0.02 1.02 16 9 C -0.13 -1.49 5.80 -26.73 -0.16 -1.64 16 10 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 11 N -0.67 -11.46 6.13 -115.06 -0.70 -12.16 16 12 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 13 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 14 O -0.58 -16.44 15.78 5.55 0.09 -16.35 16 15 N -0.56 -14.69 5.29 -10.96 -0.06 -14.75 16 16 C -0.30 -8.56 9.68 -14.93 -0.14 -8.71 16 17 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 18 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 20 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 24 N -0.36 -3.79 3.02 -56.00 -0.17 -3.96 16 25 C 0.07 0.60 10.57 -17.22 -0.18 0.42 16 26 C -0.27 -2.49 10.80 -40.01 -0.43 -2.93 16 27 C 0.05 0.50 12.03 -17.36 -0.21 0.29 16 28 N -0.29 -3.70 12.58 30.62 0.39 -3.31 16 29 H 0.07 0.27 7.16 -51.93 -0.37 -0.10 16 30 H 0.10 0.15 4.53 -51.93 -0.24 -0.09 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.10 6.95 -51.93 -0.36 -0.26 16 33 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.07 0.17 6.01 -51.93 -0.31 -0.14 16 35 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.35 6.02 8.43 -39.29 -0.33 5.69 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.17 0.99 7.26 -52.49 -0.38 0.61 16 47 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.18 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -38.54 400.16 -7.22 -45.76 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -7.24 Total: 11.73 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -0.82 Total: 7.92 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -0.34 Total: -63.68 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.18 Total: -24.17 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.54 -7.22 -45.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483453884.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.908 kcal (2) G-P(sol) polarization free energy of solvation -38.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds