Wall clock time and date at job start Tue Mar 31 2020 20:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46927 * 2 1 4 4 C 1.52998 * 109.47012 * 239.99457 * 2 1 3 5 5 N 1.46499 * 109.47079 * 185.00065 * 4 2 1 6 6 C 1.34777 * 120.00125 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99930 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99855 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47417 * 180.02562 * 9 8 6 11 11 C 1.34664 * 126.58651 * 275.03863 * 10 9 8 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 N 1.46900 * 109.46954 * 119.99447 * 2 1 3 17 17 C 1.46900 * 111.00175 * 58.95862 * 16 2 1 18 18 C 1.46900 * 111.00282 * 295.00066 * 16 2 1 19 19 C 1.50696 * 109.47127 * 190.00165 * 18 16 2 20 20 O 1.21288 * 120.00252 * 0.02562 * 19 18 16 21 21 N 1.34781 * 120.00056 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99976 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00123 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99709 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99393 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00072 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46607 * 90.00465 * 26 24 22 28 28 H 1.48493 * 109.46911 * 210.00215 * 26 24 22 29 29 H 1.48497 * 109.47190 * 330.00917 * 26 24 22 30 30 H 1.08989 * 109.47312 * 60.00473 * 1 2 3 31 31 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46916 * 300.00102 * 1 2 3 33 33 H 1.08999 * 109.47000 * 64.99860 * 4 2 1 34 34 H 1.09000 * 109.47126 * 304.99652 * 4 2 1 35 35 H 0.97010 * 120.00024 * 359.97438 * 5 4 2 36 36 H 1.08999 * 109.47441 * 59.99731 * 8 6 5 37 37 H 1.08998 * 109.47505 * 299.99456 * 8 6 5 38 38 H 1.08992 * 109.47476 * 59.99861 * 9 8 6 39 39 H 1.09004 * 109.47205 * 299.99755 * 9 8 6 40 40 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 41 41 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 42 42 H 1.08996 * 109.47360 * 59.99079 * 17 16 2 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 16 2 44 44 H 1.09007 * 109.46998 * 299.99703 * 17 16 2 45 45 H 1.09000 * 109.47109 * 309.99917 * 18 16 2 46 46 H 1.08999 * 109.47255 * 69.99878 * 18 16 2 47 47 H 0.97000 * 119.99874 * 359.97438 * 21 19 18 48 48 H 0.97007 * 119.99635 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1910 7 8 3.5700 -1.8836 -3.1398 8 6 5.6750 -1.5361 -2.1309 9 6 6.1850 -2.2576 -3.3800 10 6 7.6869 -2.3658 -3.3196 11 6 8.5753 -1.4335 -3.7135 12 7 9.8075 -1.9136 -3.4890 13 6 9.7165 -3.1111 -2.9784 14 7 8.4103 -3.4303 -2.8532 15 1 8.0515 -4.2588 -2.4987 16 7 2.0197 -0.6924 1.1995 17 6 1.5284 -2.0760 1.2461 18 6 1.6487 0.0393 2.4181 19 6 2.3679 -0.5569 3.6006 20 8 3.1163 -1.4983 3.4436 21 7 2.1795 -0.0439 4.8326 22 6 2.8342 -0.5859 5.9083 23 1 3.5006 -1.4243 5.7685 24 6 2.6396 -0.0573 7.1786 25 7 3.2668 -0.5773 8.2097 26 14 1.4864 1.3922 7.4204 27 1 0.1137 0.8932 7.6885 28 1 1.9506 2.2071 8.5717 29 1 1.4783 2.2284 6.1933 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1585 -2.1369 34 1 1.6054 -1.7199 -1.2949 35 1 3.9825 -0.4622 -0.4318 36 1 5.9637 -2.0990 -1.2433 37 1 6.1093 -0.5374 -2.0850 38 1 5.8963 -1.6951 -4.2678 39 1 5.7507 -3.2563 -3.4255 40 1 8.3374 -0.4674 -4.1334 41 1 10.5479 -3.7407 -2.6979 42 1 1.8762 -2.6150 0.3649 43 1 1.9053 -2.5653 2.1442 44 1 0.4385 -2.0742 1.2641 45 1 1.9298 1.0872 2.3125 46 1 0.5722 -0.0343 2.5726 47 1 1.5813 0.7093 4.9581 48 1 3.1312 -0.2081 9.0964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485315033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:34 Heat of formation + Delta-G solvation = -7.205883 kcal Electronic energy + Delta-G solvation = -28654.521757 eV Core-core repulsion = 24552.736825 eV Total energy + Delta-G solvation = -4101.784932 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.26560 -39.98094 -39.03847 -37.51619 -34.50166 -34.12118 -33.90259 -32.54881 -31.73855 -31.14116 -29.16869 -28.16545 -26.63236 -25.50970 -24.34944 -23.52808 -21.77753 -21.01395 -20.40091 -19.90274 -19.36877 -18.29768 -18.18437 -17.00512 -16.65654 -16.21713 -15.87254 -15.38132 -15.18221 -15.03621 -14.95591 -14.59483 -14.28702 -14.02413 -13.69062 -13.67472 -13.41399 -13.23164 -13.10441 -12.96839 -12.68587 -12.54636 -12.38599 -12.23996 -11.96628 -11.73723 -11.46659 -11.39176 -11.35269 -11.07818 -10.87553 -10.64255 -10.26949 -10.21042 -10.02927 -9.96569 -9.59083 -9.07523 -8.66366 -8.60697 -8.23967 -8.04350 -6.36283 -3.87827 1.76707 2.58030 2.84808 2.92368 2.97702 3.02013 3.10946 3.18859 3.67472 3.82143 4.05339 4.38413 4.55980 4.58430 4.69916 4.70958 4.76609 4.90071 5.02381 5.09553 5.15044 5.15793 5.29930 5.32584 5.35211 5.40528 5.44370 5.48995 5.58981 5.65095 5.73133 5.77163 5.77417 5.84320 5.89421 6.04341 6.04616 6.39004 6.45281 6.49362 7.04673 7.10575 7.18874 7.51369 7.53003 7.81729 8.09003 8.17961 8.54548 8.89907 9.37036 9.77486 10.76763 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.002281 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.125016 B =12273.015095 C =14182.547651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.063 3.937 3 H 0.089 0.911 4 C 0.131 3.869 5 N -0.714 5.714 6 C 0.513 3.487 7 O -0.554 6.554 8 C -0.137 4.137 9 C -0.026 4.026 10 C -0.021 4.021 11 C -0.024 4.024 12 N -0.495 5.495 13 C 0.182 3.818 14 N -0.566 5.566 15 H 0.420 0.580 16 N -0.511 5.511 17 C 0.015 3.985 18 C 0.041 3.959 19 C 0.452 3.548 20 O -0.560 6.560 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.207 0.793 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.021 0.979 45 H 0.089 0.911 46 H 0.051 0.949 47 H 0.370 0.630 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.241 0.198 -21.149 21.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.107 0.893 4 C 0.006 3.994 5 N -0.365 5.365 6 C 0.299 3.701 7 O -0.433 6.433 8 C -0.177 4.177 9 C -0.065 4.065 10 C -0.136 4.136 11 C -0.172 4.172 12 N -0.214 5.214 13 C -0.102 4.102 14 N -0.170 5.170 15 H 0.258 0.742 16 N -0.234 5.234 17 C -0.132 4.132 18 C -0.090 4.090 19 C 0.238 3.762 20 O -0.442 6.442 21 N -0.230 5.230 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.195 1.195 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.186 0.814 41 H 0.224 0.776 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.039 0.961 45 H 0.107 0.893 46 H 0.069 0.931 47 H 0.202 0.798 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.636 -0.322 -21.886 21.949 hybrid contribution -2.469 0.584 1.365 2.881 sum -0.833 0.262 -20.521 20.539 Atomic orbital electron populations 1.22409 0.96611 1.02888 1.02681 1.22058 0.93500 0.98686 0.90363 0.89297 1.21367 0.80497 1.00868 0.96633 1.45887 1.07637 1.59311 1.23699 1.20586 0.89917 0.77441 0.82144 1.90689 1.70559 1.48325 1.33698 1.21659 0.92166 1.03692 1.00202 1.19734 0.86073 1.02322 0.98411 1.21322 0.95195 0.90192 1.06932 1.22130 0.87802 1.00522 1.06763 1.70287 1.25328 1.08541 1.17272 1.24987 0.85781 0.95521 1.03936 1.43343 1.07872 1.16741 1.49030 0.74222 1.61815 1.58972 1.02548 1.00094 1.22613 0.96844 0.89307 1.04457 1.21914 0.98159 0.98555 0.90388 1.19627 0.86506 0.86780 0.83312 1.90524 1.39778 1.29500 1.84396 1.42220 1.42450 1.31205 1.07120 1.19410 1.24027 1.15946 0.83962 0.86293 1.25046 0.97743 0.98115 0.95265 1.69622 1.41741 1.41205 0.99484 0.86676 0.81469 0.82617 0.78645 1.19679 1.20149 1.19493 0.91821 0.91762 0.91767 0.91252 0.91433 0.75088 0.88715 0.88290 0.88686 0.90419 0.81399 0.77626 0.91968 0.88590 0.96073 0.89312 0.93064 0.79753 0.91582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.66 8.50 37.16 0.32 -1.35 16 2 C 0.06 0.64 2.50 -67.71 -0.17 0.47 16 3 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 4 C 0.13 1.35 4.69 -4.04 -0.02 1.33 16 5 N -0.71 -7.57 5.39 -60.30 -0.32 -7.90 16 6 C 0.51 5.71 7.83 -10.99 -0.09 5.63 16 7 O -0.55 -7.90 15.98 5.56 0.09 -7.81 16 8 C -0.14 -1.16 5.68 -27.89 -0.16 -1.32 16 9 C -0.03 -0.22 5.06 -27.88 -0.14 -0.36 16 10 C -0.02 -0.18 6.49 -81.60 -0.53 -0.71 16 11 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 12 N -0.50 -5.71 11.25 -14.66 -0.16 -5.87 16 13 C 0.18 1.52 13.04 -90.37 -1.18 0.34 16 14 N -0.57 -4.16 6.15 -10.30 -0.06 -4.23 16 15 H 0.42 1.92 8.96 -40.82 -0.37 1.55 16 16 N -0.51 -6.92 3.93 -236.33 -0.93 -7.85 16 17 C 0.02 0.22 8.46 60.06 0.51 0.73 16 18 C 0.04 0.62 4.89 -4.98 -0.02 0.59 16 19 C 0.45 9.54 7.47 -10.99 -0.08 9.46 16 20 O -0.56 -13.92 13.91 5.55 0.08 -13.84 16 21 N -0.59 -13.39 5.09 -10.96 -0.06 -13.44 16 22 C -0.30 -8.33 10.16 -14.93 -0.15 -8.48 16 23 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.21 13.96 55.50 0.77 -24.44 16 26 Si 0.88 18.82 27.74 -169.99 -4.71 14.11 16 27 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 28 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 29 H -0.27 -5.21 6.52 56.52 0.37 -4.85 16 30 H 0.06 0.47 8.14 -51.94 -0.42 0.05 16 31 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 32 H 0.06 0.58 6.75 -51.93 -0.35 0.23 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.78 6.70 -51.93 -0.35 0.43 16 35 H 0.41 4.33 8.14 -40.82 -0.33 4.00 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.17 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 43 H 0.10 1.74 5.82 -51.93 -0.30 1.44 16 44 H 0.02 0.27 6.28 -51.93 -0.33 -0.06 16 45 H 0.09 1.15 8.00 -51.93 -0.42 0.73 16 46 H 0.05 0.69 6.94 -51.93 -0.36 0.33 16 47 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 48 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -35.36 390.99 -8.50 -43.86 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -7.05 Total: 14.63 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -2.02 Total: 6.89 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -0.76 Total: -63.73 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: 0.17 Total: -21.65 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -35.36 -8.50 -43.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485315033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.650 kcal (2) G-P(sol) polarization free energy of solvation -35.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds