Wall clock time and date at job start Tue Mar 31 2020 20:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46927 * 2 1 4 4 C 1.52998 * 109.47012 * 239.99457 * 2 1 3 5 5 N 1.46499 * 109.47079 * 185.00065 * 4 2 1 6 6 C 1.34777 * 120.00125 * 180.02562 * 5 4 2 7 7 O 1.21282 * 119.99930 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99855 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.47018 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47417 * 180.02562 * 9 8 6 11 11 C 1.34664 * 126.58651 * 275.03863 * 10 9 8 12 12 N 1.34134 * 108.01786 * 179.74146 * 11 10 9 13 13 C 1.30496 * 109.25675 * 0.37372 * 12 11 10 14 14 N 1.35047 * 108.70161 * 359.62603 * 13 12 11 15 15 H 0.96997 * 126.40535 * 180.25138 * 14 13 12 16 16 N 1.46900 * 109.46954 * 119.99447 * 2 1 3 17 17 C 1.46900 * 111.00175 * 58.95862 * 16 2 1 18 18 C 1.46900 * 111.00282 * 295.00066 * 16 2 1 19 19 C 1.50696 * 109.47127 * 190.00165 * 18 16 2 20 20 O 1.21288 * 120.00252 * 0.02562 * 19 18 16 21 21 N 1.34781 * 120.00056 * 180.02562 * 19 18 16 22 22 C 1.37095 * 119.99976 * 180.02562 * 21 19 18 23 23 H 1.08000 * 120.00123 * 359.97438 * 22 21 19 24 24 C 1.38957 * 119.99709 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99393 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 120.00072 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46607 * 90.00465 * 26 24 22 28 28 H 1.48493 * 109.46911 * 210.00215 * 26 24 22 29 29 H 1.48497 * 109.47190 * 330.00917 * 26 24 22 30 30 H 1.08989 * 109.47312 * 60.00473 * 1 2 3 31 31 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46916 * 300.00102 * 1 2 3 33 33 H 1.08999 * 109.47000 * 64.99860 * 4 2 1 34 34 H 1.09000 * 109.47126 * 304.99652 * 4 2 1 35 35 H 0.97010 * 120.00024 * 359.97438 * 5 4 2 36 36 H 1.08999 * 109.47441 * 59.99731 * 8 6 5 37 37 H 1.08998 * 109.47505 * 299.99456 * 8 6 5 38 38 H 1.08992 * 109.47476 * 59.99861 * 9 8 6 39 39 H 1.09004 * 109.47205 * 299.99755 * 9 8 6 40 40 H 1.07998 * 125.99171 * 359.92955 * 11 10 9 41 41 H 1.08002 * 125.65353 * 179.89694 * 13 12 11 42 42 H 1.08996 * 109.47360 * 59.99079 * 17 16 2 43 43 H 1.08996 * 109.47271 * 180.02562 * 17 16 2 44 44 H 1.09007 * 109.46998 * 299.99703 * 17 16 2 45 45 H 1.09000 * 109.47109 * 309.99917 * 18 16 2 46 46 H 1.08999 * 109.47255 * 69.99878 * 18 16 2 47 47 H 0.97000 * 119.99874 * 359.97438 * 21 19 18 48 48 H 0.97007 * 119.99635 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1910 7 8 3.5700 -1.8836 -3.1398 8 6 5.6750 -1.5361 -2.1309 9 6 6.1850 -2.2576 -3.3800 10 6 7.6869 -2.3658 -3.3196 11 6 8.5753 -1.4335 -3.7135 12 7 9.8075 -1.9136 -3.4890 13 6 9.7165 -3.1111 -2.9784 14 7 8.4103 -3.4303 -2.8532 15 1 8.0515 -4.2588 -2.4987 16 7 2.0197 -0.6924 1.1995 17 6 1.5284 -2.0760 1.2461 18 6 1.6487 0.0393 2.4181 19 6 2.3679 -0.5569 3.6006 20 8 3.1163 -1.4983 3.4436 21 7 2.1795 -0.0439 4.8326 22 6 2.8342 -0.5859 5.9083 23 1 3.5006 -1.4243 5.7685 24 6 2.6396 -0.0573 7.1786 25 7 3.2668 -0.5773 8.2097 26 14 1.4864 1.3922 7.4204 27 1 0.1137 0.8932 7.6885 28 1 1.9506 2.2071 8.5717 29 1 1.4783 2.2284 6.1933 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7516 -0.1585 -2.1369 34 1 1.6054 -1.7199 -1.2949 35 1 3.9825 -0.4622 -0.4318 36 1 5.9637 -2.0990 -1.2433 37 1 6.1093 -0.5374 -2.0850 38 1 5.8963 -1.6951 -4.2678 39 1 5.7507 -3.2563 -3.4255 40 1 8.3374 -0.4674 -4.1334 41 1 10.5479 -3.7407 -2.6979 42 1 1.8762 -2.6150 0.3649 43 1 1.9053 -2.5653 2.1442 44 1 0.4385 -2.0742 1.2641 45 1 1.9298 1.0872 2.3125 46 1 0.5722 -0.0343 2.5726 47 1 1.5813 0.7093 4.9581 48 1 3.1312 -0.2081 9.0964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485315033.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:33 Heat of formation + Delta-G solvation = -35.165862 kcal Electronic energy + Delta-G solvation = -28655.734192 eV Core-core repulsion = 24552.736825 eV Total energy + Delta-G solvation = -4102.997368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93783 -40.97523 -40.38940 -38.81703 -36.01177 -35.25113 -34.88722 -33.72168 -33.23479 -32.09647 -29.88872 -29.47024 -27.42362 -26.99164 -25.44680 -24.66204 -22.45123 -21.70924 -21.40383 -21.16258 -20.75879 -20.04859 -18.85165 -18.08999 -17.66924 -17.15649 -16.95714 -16.75707 -16.42191 -16.29159 -15.85522 -15.60532 -15.34327 -15.02479 -14.91855 -14.71140 -14.44342 -14.32234 -14.27576 -14.12281 -13.77002 -13.70261 -13.42190 -13.15122 -13.06641 -12.88018 -12.77736 -12.41521 -12.39259 -12.25348 -12.15831 -11.96898 -11.73528 -11.43130 -11.00792 -10.93456 -10.86024 -10.33696 -10.20144 -9.96453 -9.30801 -9.17725 -8.39154 -5.99215 1.10195 1.31137 1.36558 1.45454 1.70127 2.00821 2.17391 2.24455 2.24973 2.41376 2.65302 3.17804 3.29151 3.69951 3.77166 3.94025 4.02296 4.04581 4.10077 4.21058 4.31427 4.34259 4.35588 4.45830 4.51360 4.57393 4.63096 4.65398 4.66665 4.68887 4.81722 4.83434 4.87820 5.03878 5.09629 5.21062 5.33165 5.36525 5.54755 5.55829 5.80255 5.91415 6.02458 6.19264 6.56407 6.62678 6.64765 6.92282 7.14261 7.31182 7.44120 8.01946 8.78522 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011228 B = 0.002281 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.125016 B =12273.015095 C =14182.547651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.071 3.929 3 H 0.108 0.892 4 C 0.131 3.869 5 N -0.711 5.711 6 C 0.512 3.488 7 O -0.587 6.587 8 C -0.129 4.129 9 C -0.017 4.017 10 C -0.021 4.021 11 C -0.046 4.046 12 N -0.539 5.539 13 C 0.185 3.815 14 N -0.560 5.560 15 H 0.433 0.567 16 N -0.524 5.524 17 C 0.025 3.975 18 C 0.054 3.946 19 C 0.453 3.547 20 O -0.603 6.603 21 N -0.595 5.595 22 C -0.323 4.323 23 H 0.055 0.945 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.963 3.037 27 H -0.259 1.259 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.175 0.825 41 H 0.240 0.760 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.388 0.612 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 2.664 -22.441 22.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 H 0.126 0.874 4 C 0.007 3.993 5 N -0.362 5.362 6 C 0.299 3.701 7 O -0.468 6.468 8 C -0.169 4.169 9 C -0.056 4.056 10 C -0.137 4.137 11 C -0.194 4.194 12 N -0.259 5.259 13 C -0.099 4.099 14 N -0.164 5.164 15 H 0.273 0.727 16 N -0.249 5.249 17 C -0.123 4.123 18 C -0.077 4.077 19 C 0.240 3.760 20 O -0.487 6.487 21 N -0.237 5.237 22 C -0.452 4.452 23 H 0.073 0.927 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.783 3.217 27 H -0.184 1.184 28 H -0.203 1.203 29 H -0.151 1.151 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.251 0.749 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.193 0.807 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.141 0.859 46 H 0.096 0.904 47 H 0.224 0.776 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.432 2.145 -23.203 23.305 hybrid contribution -1.741 -0.335 1.685 2.446 sum -2.173 1.810 -21.517 21.702 Atomic orbital electron populations 1.22385 0.95136 1.02815 1.03927 1.22103 0.94590 0.98899 0.88126 0.87380 1.21398 0.80213 1.00395 0.97294 1.45934 1.07940 1.58860 1.23484 1.20963 0.90811 0.76697 0.81598 1.90674 1.71398 1.49786 1.34959 1.21624 0.90386 1.04588 1.00300 1.19626 0.85671 1.02068 0.98242 1.21322 0.95218 0.90365 1.06795 1.22391 0.87972 1.01408 1.07593 1.70262 1.26199 1.10294 1.19145 1.25654 0.86815 0.95026 1.02378 1.43357 1.07622 1.16973 1.48468 0.72664 1.61726 1.59993 1.02243 1.00890 1.22395 0.97645 0.89868 1.02369 1.21843 0.98569 0.99507 0.87806 1.20924 0.85200 0.85468 0.84363 1.90521 1.41516 1.31376 1.85304 1.42056 1.42991 1.32092 1.06531 1.18971 1.24519 1.15363 0.86355 0.92650 1.26105 0.99622 1.01801 0.94052 1.69811 1.44080 1.43601 1.00317 0.85388 0.78375 0.77899 0.80008 1.18399 1.20346 1.15144 0.89911 0.92512 0.91196 0.90229 0.92770 0.74901 0.88505 0.86865 0.88877 0.90743 0.80734 0.74372 0.91574 0.92995 0.94407 0.85936 0.90370 0.77616 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.50 71.98 0.61 -1.90 16 2 C 0.07 1.19 2.50 44.92 0.11 1.30 16 3 H 0.11 1.48 8.03 -2.39 -0.02 1.46 16 4 C 0.13 2.42 4.69 86.38 0.40 2.83 16 5 N -0.71 -14.00 5.39 -463.07 -2.50 -16.50 16 6 C 0.51 10.92 7.83 87.66 0.69 11.61 16 7 O -0.59 -16.37 15.98 -3.04 -0.05 -16.42 16 8 C -0.13 -2.06 5.68 29.85 0.17 -1.89 16 9 C -0.02 -0.27 5.06 29.85 0.15 -0.12 16 10 C -0.02 -0.35 6.49 40.95 0.27 -0.08 16 11 C -0.05 -0.95 11.79 83.52 0.98 0.04 16 12 N -0.54 -12.26 11.25 -200.31 -2.25 -14.51 16 13 C 0.19 2.89 13.04 180.26 2.35 5.24 16 14 N -0.56 -7.65 6.15 -186.49 -1.15 -8.80 16 15 H 0.43 3.42 8.96 -92.71 -0.83 2.59 16 16 N -0.52 -12.98 3.93 -901.63 -3.54 -16.52 16 17 C 0.03 0.70 8.46 127.69 1.08 1.78 16 18 C 0.05 1.42 4.89 85.56 0.42 1.84 16 19 C 0.45 18.83 7.47 87.65 0.66 19.49 16 20 O -0.60 -31.01 13.91 -3.05 -0.04 -31.06 16 21 N -0.59 -26.50 5.09 -306.98 -1.56 -28.07 16 22 C -0.32 -18.28 10.16 84.04 0.85 -17.43 16 23 H 0.06 3.76 7.39 -2.91 -0.02 3.74 16 24 C -0.02 -0.95 5.50 84.93 0.47 -0.49 16 25 N -0.94 -55.71 13.96 21.67 0.30 -55.40 16 26 Si 0.96 37.61 27.74 68.60 1.90 39.51 16 27 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 28 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.23 -7.33 6.52 99.48 0.65 -6.68 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.88 6.38 -2.39 -0.02 0.86 16 32 H 0.07 0.91 6.75 -2.38 -0.02 0.89 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.17 6.70 -2.39 -0.02 1.15 16 35 H 0.41 8.01 8.14 -92.70 -0.75 7.26 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.09 1.53 8.10 -2.39 -0.02 1.51 16 39 H 0.07 1.23 8.10 -2.38 -0.02 1.22 16 40 H 0.18 3.01 8.06 -2.91 -0.02 2.99 16 41 H 0.24 1.71 8.06 -2.91 -0.02 1.68 16 42 H 0.07 1.75 6.44 -2.39 -0.02 1.74 16 43 H 0.05 1.93 5.82 -2.39 -0.01 1.91 16 44 H 0.04 0.91 6.28 -2.38 -0.01 0.89 16 45 H 0.12 2.53 8.00 -2.39 -0.02 2.51 16 46 H 0.08 1.73 6.94 -2.39 -0.02 1.72 16 47 H 0.39 14.23 5.76 -92.71 -0.53 13.69 16 48 H 0.28 15.13 8.31 -92.70 -0.77 14.36 16 Total: -1.00 -83.21 390.99 -0.83 -84.05 By element: Atomic # 1 Polarization: 42.66 SS G_CDS: -1.16 Total: 41.50 kcal Atomic # 6 Polarization: 13.01 SS G_CDS: 9.21 Total: 22.22 kcal Atomic # 7 Polarization: -129.11 SS G_CDS: -10.70 Total: -139.81 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -0.09 Total: -47.48 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 1.90 Total: 39.51 kcal Total: -83.21 -0.83 -84.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485315033.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.881 kcal (2) G-P(sol) polarization free energy of solvation -83.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds