Wall clock time and date at job start Tue Mar 31 2020 20:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46996 * 2 1 4 4 C 1.52995 * 109.46815 * 119.99947 * 2 1 3 5 5 N 1.46498 * 109.47208 * 65.67967 * 4 2 1 6 6 C 1.34771 * 120.00485 * 176.23189 * 5 4 2 7 7 O 1.21284 * 119.99436 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00397 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.47271 * 180.02562 * 8 6 5 10 10 C 1.50695 * 109.47047 * 180.02562 * 9 8 6 11 11 C 1.34673 * 126.58859 * 274.68218 * 10 9 8 12 12 N 1.34126 * 108.01899 * 179.87704 * 11 10 9 13 13 C 1.30497 * 109.25981 * 0.40242 * 12 11 10 14 14 N 1.35046 * 108.69727 * 359.74875 * 13 12 11 15 15 H 0.97001 * 126.40047 * 180.02562 * 14 13 12 16 16 N 1.46895 * 109.47020 * 240.00314 * 2 1 3 17 17 C 1.46904 * 110.99778 * 184.09491 * 16 2 1 18 18 C 1.46905 * 111.00396 * 60.14442 * 16 2 1 19 19 C 1.50698 * 109.46839 * 189.99963 * 18 16 2 20 20 O 1.21295 * 120.00693 * 359.97438 * 19 18 16 21 21 N 1.34777 * 119.99780 * 179.97438 * 19 18 16 22 22 C 1.37100 * 120.00340 * 180.02562 * 21 19 18 23 23 H 1.07997 * 119.99334 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00061 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99985 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00087 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.47404 * 90.00374 * 26 24 22 28 28 H 1.48506 * 109.46928 * 209.99994 * 26 24 22 29 29 H 1.48505 * 109.47200 * 329.99793 * 26 24 22 30 30 H 1.08998 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47608 * 300.00101 * 1 2 3 32 32 H 1.09001 * 109.46930 * 59.99843 * 1 2 3 33 33 H 1.08998 * 109.47659 * 305.67454 * 4 2 1 34 34 H 1.09004 * 109.46999 * 185.67127 * 4 2 1 35 35 H 0.97004 * 119.99799 * 356.22386 * 5 4 2 36 36 H 1.08999 * 109.47228 * 60.00313 * 8 6 5 37 37 H 1.09000 * 109.47538 * 299.99614 * 8 6 5 38 38 H 1.08998 * 109.47255 * 59.99700 * 9 8 6 39 39 H 1.09009 * 109.46733 * 300.00137 * 9 8 6 40 40 H 1.08000 * 125.98755 * 0.03161 * 11 10 9 41 41 H 1.07996 * 125.65769 * 179.73673 * 13 12 11 42 42 H 1.09004 * 109.47267 * 66.54284 * 17 16 2 43 43 H 1.09000 * 109.47035 * 186.53742 * 17 16 2 44 44 H 1.09001 * 109.47055 * 306.53606 * 17 16 2 45 45 H 1.08998 * 109.46288 * 309.99726 * 18 16 2 46 46 H 1.08991 * 109.47099 * 69.99918 * 18 16 2 47 47 H 0.97005 * 120.00171 * 359.97438 * 21 19 18 48 48 H 0.97001 * 120.00254 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 1.6664 -2.1362 1.1829 6 6 2.0771 -2.9875 2.1436 7 8 2.7564 -2.5821 3.0629 8 6 1.6924 -4.4429 2.0756 9 6 2.2819 -5.1831 3.2780 10 6 1.8977 -6.6386 3.2096 11 6 0.7562 -7.1897 3.6646 12 7 0.8009 -8.5059 3.4104 13 6 1.9303 -8.7928 2.8228 14 7 2.6442 -7.6556 2.6785 15 1 3.5220 -7.5745 2.2738 16 7 2.0196 -0.6924 -1.1994 17 6 3.4849 -0.7974 -1.1854 18 6 1.5515 -0.0243 -2.4211 19 6 1.8605 -0.8887 -3.6162 20 8 2.4164 -1.9561 -3.4653 21 7 1.5190 -0.4757 -4.8529 22 6 1.7996 -1.2623 -5.9402 23 1 2.2946 -2.2126 -5.8057 24 6 1.4480 -0.8362 -7.2152 25 7 1.7175 -1.5899 -8.2574 26 14 0.5925 0.8080 -7.4477 27 1 1.6096 1.8722 -7.6424 28 1 -0.2899 0.7425 -8.6404 29 1 -0.2227 1.1163 -6.2453 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.5960 -0.2695 2.1363 34 1 3.1252 -0.6341 1.3015 35 1 1.1233 -2.4605 0.4474 36 1 2.0799 -4.8786 1.1547 37 1 0.6062 -4.5328 2.0911 38 1 1.8941 -4.7473 4.1987 39 1 3.3682 -5.0932 3.2629 40 1 -0.0542 -6.6636 4.1472 41 1 2.2424 -9.7765 2.5048 42 1 3.7944 -1.4536 -0.3719 43 1 3.8288 -1.2084 -2.1346 44 1 3.9186 0.1919 -1.0393 45 1 0.4753 0.1366 -2.3575 46 1 2.0568 0.9357 -2.5266 47 1 1.0740 0.3778 -4.9737 48 1 1.4724 -1.2924 -9.1475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485315034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:35 Heat of formation + Delta-G solvation = -33.607644 kcal Electronic energy + Delta-G solvation = -28764.682401 eV Core-core repulsion = 24661.752603 eV Total energy + Delta-G solvation = -4102.929798 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.93891 -40.98787 -40.37561 -38.70459 -36.03559 -35.22192 -34.88663 -33.72530 -33.23613 -32.14886 -30.17616 -29.63240 -27.51637 -26.39658 -25.34489 -24.72002 -22.45836 -21.80119 -21.33008 -21.26593 -20.84947 -20.08033 -18.87726 -18.11333 -17.77454 -17.11665 -16.83737 -16.75680 -16.47415 -16.00346 -15.82001 -15.60939 -15.28387 -15.25983 -14.97595 -14.70828 -14.57169 -14.33515 -14.25927 -14.11379 -13.79805 -13.64410 -13.32017 -13.17075 -13.09651 -12.95201 -12.73546 -12.42219 -12.31705 -12.25254 -12.15958 -11.97252 -11.65187 -11.44006 -11.00941 -10.93565 -10.86317 -10.33314 -10.20449 -9.95423 -9.30921 -9.23079 -8.39449 -5.99657 1.10173 1.30843 1.36275 1.45140 1.70568 1.99908 2.17556 2.24124 2.24986 2.41494 2.63691 3.17253 3.26167 3.68854 3.76403 3.94194 4.00728 4.04281 4.09920 4.11981 4.31999 4.35390 4.40069 4.43242 4.51232 4.57717 4.61740 4.63100 4.67357 4.76206 4.80390 4.84254 4.96787 5.04739 5.09557 5.17673 5.36508 5.39286 5.53433 5.55724 5.80213 5.90452 6.01779 6.18583 6.56160 6.62146 6.64327 6.91603 7.14160 7.31292 7.43416 8.00963 8.78171 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.002247 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.338259 B =12458.658026 C =14013.277282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.070 3.930 3 H 0.073 0.927 4 C 0.130 3.870 5 N -0.708 5.708 6 C 0.512 3.488 7 O -0.587 6.587 8 C -0.129 4.129 9 C -0.017 4.017 10 C -0.021 4.021 11 C -0.046 4.046 12 N -0.539 5.539 13 C 0.185 3.815 14 N -0.560 5.560 15 H 0.433 0.567 16 N -0.526 5.526 17 C 0.030 3.970 18 C 0.050 3.950 19 C 0.453 3.547 20 O -0.603 6.603 21 N -0.594 5.594 22 C -0.323 4.323 23 H 0.056 0.944 24 C -0.017 4.017 25 N -0.937 5.937 26 Si 0.963 3.037 27 H -0.259 1.259 28 H -0.278 1.278 29 H -0.228 1.228 30 H 0.059 0.941 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.176 0.824 41 H 0.240 0.760 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.034 0.966 45 H 0.125 0.875 46 H 0.076 0.924 47 H 0.388 0.612 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.606 1.761 22.481 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 H 0.090 0.910 4 C 0.006 3.994 5 N -0.360 5.360 6 C 0.300 3.700 7 O -0.468 6.468 8 C -0.169 4.169 9 C -0.056 4.056 10 C -0.137 4.137 11 C -0.193 4.193 12 N -0.259 5.259 13 C -0.099 4.099 14 N -0.164 5.164 15 H 0.273 0.727 16 N -0.252 5.252 17 C -0.118 4.118 18 C -0.081 4.081 19 C 0.241 3.759 20 O -0.487 6.487 21 N -0.237 5.237 22 C -0.452 4.452 23 H 0.074 0.926 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.783 3.217 27 H -0.184 1.184 28 H -0.203 1.203 29 H -0.152 1.152 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.193 0.807 41 H 0.256 0.744 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.143 0.857 46 H 0.094 0.906 47 H 0.224 0.776 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.609 0.272 23.230 23.377 hybrid contribution 1.002 1.574 -1.709 2.530 sum -1.607 1.846 21.521 21.659 Atomic orbital electron populations 1.21943 0.92360 1.02970 1.03242 1.22046 0.97310 0.96323 0.88119 0.90965 1.21385 0.99723 0.81096 0.97226 1.45926 1.54207 1.08988 1.26867 1.20949 0.78828 0.89049 0.81216 1.90677 1.40539 1.79749 1.35833 1.21624 1.04414 0.90249 1.00623 1.19626 1.01426 0.85797 0.98750 1.21323 0.94905 0.91861 1.05618 1.22392 0.99145 0.90696 1.07112 1.70259 1.21125 1.16037 1.18457 1.25651 0.88852 0.93491 1.01893 1.43360 1.19185 1.07581 1.46301 0.72680 1.61554 1.10976 1.51983 1.00682 1.22341 0.87185 0.99790 1.02442 1.21911 1.03756 0.94749 0.87667 1.20886 0.82376 0.88192 0.84446 1.90525 1.46349 1.25986 1.85812 1.42058 1.55554 1.20291 1.05755 1.18969 1.37978 1.02777 0.85494 0.92628 1.26099 0.98232 1.03224 0.93999 1.69806 1.48222 1.40118 0.99619 0.85392 0.79094 0.77279 0.79932 1.18409 1.20301 1.15164 0.92175 0.89981 0.91429 0.90065 0.92626 0.74966 0.88556 0.86860 0.88862 0.90782 0.80711 0.74387 0.91635 0.92958 0.94798 0.85712 0.90619 0.77628 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.87 71.98 0.64 -1.41 16 2 C 0.07 1.20 2.32 44.92 0.10 1.30 16 3 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.13 2.39 4.60 86.38 0.40 2.79 16 5 N -0.71 -13.77 5.11 -463.08 -2.36 -16.13 16 6 C 0.51 10.83 7.83 87.66 0.69 11.51 16 7 O -0.59 -16.28 15.98 -3.04 -0.05 -16.32 16 8 C -0.13 -2.05 5.68 29.85 0.17 -1.88 16 9 C -0.02 -0.27 5.06 29.85 0.15 -0.12 16 10 C -0.02 -0.35 6.49 40.95 0.27 -0.08 16 11 C -0.05 -0.94 11.79 83.52 0.98 0.05 16 12 N -0.54 -12.21 11.25 -200.31 -2.25 -14.46 16 13 C 0.19 2.89 13.04 180.26 2.35 5.24 16 14 N -0.56 -7.67 6.15 -186.50 -1.15 -8.82 16 15 H 0.43 3.48 8.96 -92.71 -0.83 2.65 16 16 N -0.53 -13.28 3.83 -901.62 -3.45 -16.74 16 17 C 0.03 0.86 8.57 127.69 1.09 1.95 16 18 C 0.05 1.35 5.27 85.56 0.45 1.80 16 19 C 0.45 19.00 7.41 87.66 0.65 19.65 16 20 O -0.60 -31.11 13.97 -3.08 -0.04 -31.15 16 21 N -0.59 -26.63 5.09 -306.99 -1.56 -28.19 16 22 C -0.32 -18.32 10.16 84.04 0.85 -17.47 16 23 H 0.06 3.78 7.39 -2.91 -0.02 3.76 16 24 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 25 N -0.94 -55.68 13.96 21.66 0.30 -55.38 16 26 Si 0.96 37.66 27.74 68.60 1.90 39.56 16 27 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 28 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 29 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 30 H 0.06 0.92 7.15 -2.39 -0.02 0.91 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.90 6.20 -2.39 -0.01 0.88 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.19 6.83 -2.38 -0.02 1.17 16 35 H 0.41 7.96 7.29 -92.71 -0.68 7.29 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.09 1.52 8.10 -2.39 -0.02 1.51 16 39 H 0.07 1.23 8.10 -2.38 -0.02 1.21 16 40 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.24 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.06 1.79 6.74 -2.39 -0.02 1.77 16 43 H 0.05 1.94 5.78 -2.39 -0.01 1.92 16 44 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 45 H 0.13 2.69 5.83 -2.39 -0.01 2.68 16 46 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 47 H 0.39 14.31 5.76 -92.70 -0.53 13.78 16 48 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -82.95 391.91 -0.49 -83.44 By element: Atomic # 1 Polarization: 42.41 SS G_CDS: -1.08 Total: 41.32 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 9.26 Total: 22.87 kcal Atomic # 7 Polarization: -129.24 SS G_CDS: -10.48 Total: -139.72 kcal Atomic # 8 Polarization: -47.38 SS G_CDS: -0.09 Total: -47.47 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 1.90 Total: 39.56 kcal Total: -82.95 -0.49 -83.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485315034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.832 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds