Wall clock time and date at job start Tue Mar 31 2020 20:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35844 * 126.13284 * 299.69368 * 4 2 1 6 6 N 1.30176 * 108.99788 * 179.85615 * 5 4 2 7 7 C 1.35750 * 108.86986 * 0.40169 * 6 5 4 8 8 C 1.47325 * 126.23780 * 179.76797 * 7 6 5 9 9 O 1.21623 * 120.00340 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99683 * 359.97438 * 8 7 6 11 11 C 1.46507 * 119.99922 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47278 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.47108 * 64.99411 * 12 11 10 14 14 C 1.52996 * 109.47279 * 184.99615 * 12 11 10 15 15 N 1.46901 * 109.46975 * 305.00002 * 12 11 10 16 16 C 1.46900 * 111.00253 * 155.00070 * 15 12 11 17 17 C 1.50693 * 109.47429 * 179.97438 * 16 15 12 18 18 O 1.21299 * 120.00035 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00264 * 180.02562 * 17 16 15 20 20 C 1.37096 * 120.00291 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99798 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00092 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00127 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99964 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47081 * 89.99595 * 24 22 20 26 26 H 1.48497 * 109.47035 * 210.00056 * 24 22 20 27 27 H 1.48504 * 109.47005 * 329.99714 * 24 22 20 28 28 C 1.35384 * 126.13406 * 119.99624 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.07997 * 125.49985 * 0.02562 * 5 4 2 37 37 H 0.96996 * 120.00543 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.46660 * 299.99692 * 11 10 8 39 39 H 1.08999 * 109.47554 * 59.99320 * 11 10 8 40 40 H 1.08994 * 109.47494 * 179.97438 * 14 12 11 41 41 H 1.09002 * 109.47153 * 300.00492 * 14 12 11 42 42 H 1.09007 * 109.46861 * 60.00030 * 14 12 11 43 43 H 1.00898 * 110.99549 * 278.95530 * 15 12 11 44 44 H 1.09002 * 109.46605 * 300.00341 * 16 15 12 45 45 H 1.09004 * 109.46758 * 59.99430 * 16 15 12 46 46 H 0.97000 * 119.99690 * 359.97438 * 19 17 16 47 47 H 0.96999 * 120.00012 * 180.02562 * 23 22 20 48 48 H 1.08000 * 126.56466 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7731 -0.3334 2.4836 6 7 2.3644 -1.1785 3.2778 7 6 3.0174 -2.1026 2.5280 8 6 3.8154 -3.2314 3.0374 9 8 4.3545 -3.9952 2.2595 10 7 3.9479 -3.4177 4.3657 11 6 4.7418 -4.5399 4.8723 12 6 4.7302 -4.5233 6.4022 13 1 3.7163 -4.7026 6.7598 14 6 5.6587 -5.6181 6.9313 15 7 5.1939 -3.2142 6.8812 16 6 4.6658 -2.9267 8.2215 17 6 5.1621 -1.5794 8.6787 18 8 5.8852 -0.9232 7.9589 19 7 4.8035 -1.1037 9.8876 20 6 5.2547 0.1223 10.3033 21 1 5.8978 0.7069 9.6622 22 6 4.8845 0.6128 11.5496 23 7 4.1016 -0.0982 12.3295 24 14 5.4998 2.2831 12.1162 25 1 4.5396 3.3339 11.6933 26 1 5.6210 2.2899 13.5962 27 1 6.8281 2.5532 11.5096 28 6 2.7999 -1.7959 1.2166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.1806 0.5132 2.7975 37 1 3.5183 -2.8084 4.9862 38 1 4.3145 -5.4773 4.5163 39 1 5.7678 -4.4497 4.5154 40 1 5.6508 -5.6060 8.0211 41 1 5.3146 -6.5894 6.5758 42 1 6.6727 -5.4387 6.5736 43 1 6.2014 -3.1615 6.8705 44 1 3.5763 -2.9213 8.1892 45 1 5.0047 -3.6939 8.9178 46 1 4.2256 -1.6286 10.4633 47 1 3.8429 0.2444 13.1993 48 1 3.1785 -2.3322 0.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491537936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:08 Heat of formation + Delta-G solvation = -19.158144 kcal Electronic energy + Delta-G solvation = -28511.962113 eV Core-core repulsion = 24409.658892 eV Total energy + Delta-G solvation = -4102.303221 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.35212 -39.23178 -38.30224 -36.80004 -36.30483 -34.01840 -33.58598 -31.43809 -31.20190 -30.61757 -29.65573 -27.88822 -26.53892 -26.11387 -23.92309 -23.39958 -22.84496 -20.87894 -20.65907 -19.61700 -19.22047 -17.87843 -17.71975 -16.60275 -16.09384 -15.89739 -15.70739 -15.41797 -14.97908 -14.89530 -14.49685 -14.31457 -14.28508 -14.05128 -13.84922 -13.70053 -13.40416 -13.18229 -12.95177 -12.84480 -12.75210 -12.44232 -12.37726 -12.10869 -11.95670 -11.78137 -11.61993 -11.50989 -11.32920 -11.00916 -10.88317 -10.36425 -10.29520 -10.17611 -9.92336 -9.88232 -9.46389 -8.88363 -8.57067 -8.41703 -8.01050 -7.90871 -6.37514 -3.77906 1.56580 2.36450 2.41258 3.20807 3.28934 3.35080 3.48728 3.71434 3.96575 3.99939 4.13012 4.31413 4.34962 4.38979 4.45022 4.54308 4.89775 4.93664 5.01321 5.05978 5.12745 5.15210 5.19703 5.21110 5.27885 5.34183 5.39931 5.47530 5.56393 5.59081 5.72066 5.80007 5.84206 5.94622 5.98795 6.09373 6.12767 6.32999 6.36902 6.71092 6.88457 7.24865 7.59392 7.65169 7.70135 7.98318 8.11134 8.50589 8.66407 9.22703 9.59512 10.11449 10.80401 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009204 B = 0.002541 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.501577 B =11015.336024 C =13521.532894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.126 3.874 3 C -0.165 4.165 4 N -0.454 5.454 5 C 0.187 3.813 6 N -0.454 5.454 7 C -0.059 4.059 8 C 0.601 3.399 9 O -0.561 6.561 10 N -0.696 5.696 11 C 0.134 3.866 12 C 0.068 3.932 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.662 5.662 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.028 3.972 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.207 0.793 37 H 0.418 0.582 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.352 0.648 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.555 -4.791 -22.275 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.223 4.223 4 N -0.137 5.137 5 C -0.097 4.097 6 N -0.172 5.172 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.441 6.441 10 N -0.346 5.346 11 C 0.010 3.990 12 C -0.043 4.043 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.294 5.294 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.224 0.776 37 H 0.256 0.744 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.172 0.828 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -8.295 -4.414 -22.632 24.505 hybrid contribution 0.197 0.291 0.792 0.867 sum -8.098 -4.122 -21.840 23.655 Atomic orbital electron populations 1.22190 0.92879 1.03431 1.03668 1.21554 0.95716 0.94252 0.86180 1.22201 1.02494 0.93933 1.03678 1.45666 1.37897 1.21868 1.08226 1.25054 1.04030 1.02031 0.78558 1.70707 1.10396 1.03715 1.32408 1.20584 1.07383 1.00392 0.90432 1.16896 0.79343 0.82595 0.82458 1.90754 1.49690 1.46668 1.56978 1.45603 1.51741 1.30752 1.06529 1.21332 0.96117 0.89011 0.92562 1.21850 0.99675 0.88705 0.94037 0.89780 1.22436 1.00351 0.99416 1.01770 1.60148 1.16856 1.27699 1.24743 1.21711 1.00611 0.96273 0.89617 1.19818 0.85947 0.88242 0.83251 1.90537 1.40663 1.60311 1.54959 1.41856 1.44958 1.18520 1.14873 1.19694 1.27928 0.94414 1.00600 0.87983 1.25245 0.96927 0.99789 0.96039 1.69612 1.35605 1.38377 1.10872 0.85871 0.79300 0.81677 0.77518 1.20417 1.20993 1.19466 1.22537 0.97918 0.90956 0.99628 0.91310 0.91586 0.90275 0.87972 0.91261 0.91453 0.90274 0.77626 0.74439 0.91425 0.91556 0.91977 0.91877 0.92003 0.82761 0.89578 0.93808 0.77503 0.91946 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.25 37.16 0.34 -0.29 16 2 C 0.13 0.63 3.57 -67.93 -0.24 0.39 16 3 C -0.17 -0.72 9.24 37.16 0.34 -0.38 16 4 N -0.45 -4.01 2.59 -111.25 -0.29 -4.30 16 5 C 0.19 1.99 11.53 -89.91 -1.04 0.96 16 6 N -0.45 -6.61 11.01 -11.03 -0.12 -6.73 16 7 C -0.06 -0.85 6.98 -83.09 -0.58 -1.43 16 8 C 0.60 9.71 7.81 -12.56 -0.10 9.61 16 9 O -0.56 -10.06 16.88 5.26 0.09 -9.97 16 10 N -0.70 -10.54 5.39 -61.41 -0.33 -10.87 16 11 C 0.13 1.77 5.37 -4.04 -0.02 1.75 16 12 C 0.07 0.85 2.75 -67.71 -0.19 0.66 16 13 H 0.08 0.99 7.80 -51.93 -0.40 0.59 16 14 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 15 N -0.66 -10.64 5.31 -107.99 -0.57 -11.21 16 16 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 17 C 0.44 10.52 7.82 -10.99 -0.09 10.44 16 18 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 19 N -0.57 -14.46 5.29 -10.97 -0.06 -14.52 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.03 0.32 11.22 -16.64 -0.19 0.13 16 29 H 0.07 0.27 7.94 -51.93 -0.41 -0.14 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.07 0.32 7.93 -51.93 -0.41 -0.09 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.42 6.71 7.85 -40.82 -0.32 6.39 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.35 6.00 8.17 -39.29 -0.32 5.68 16 44 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 45 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 48 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 407.30 15.07 6.14 6.14 Total: -1.00 -35.59 407.30 -8.58 -44.17 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: -7.54 Total: 17.92 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.68 Total: 13.09 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -0.65 Total: -71.71 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: 0.18 Total: -25.89 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.59 -8.58 -44.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491537936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.008 kcal (2) G-P(sol) polarization free energy of solvation -35.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds