Wall clock time and date at job start Tue Mar 31 2020 20:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35844 * 126.13491 * 300.02601 * 4 2 1 6 6 N 1.30170 * 109.00210 * 179.97438 * 5 4 2 7 7 C 1.35752 * 108.86952 * 0.02562 * 6 5 4 8 8 C 1.47323 * 126.23937 * 179.97438 * 7 6 5 9 9 O 1.21626 * 120.00452 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99598 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99836 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46740 * 295.00168 * 12 11 10 14 14 C 1.52991 * 109.47066 * 175.00000 * 12 11 10 15 15 N 1.46899 * 109.46944 * 54.99757 * 12 11 10 16 16 C 1.46902 * 111.00055 * 205.00235 * 15 12 11 17 17 C 1.50696 * 109.47162 * 180.02562 * 16 15 12 18 18 O 1.21291 * 120.00170 * 359.97438 * 17 16 15 19 19 N 1.34783 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99804 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00496 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99807 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46908 * 89.99656 * 24 22 20 26 26 H 1.48496 * 109.47537 * 209.99389 * 24 22 20 27 27 H 1.48505 * 109.46910 * 329.99918 * 24 22 20 28 28 C 1.35380 * 126.13118 * 119.71403 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.08001 * 125.50058 * 359.97438 * 5 4 2 37 37 H 0.96999 * 120.00322 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47186 * 300.00059 * 11 10 8 39 39 H 1.09002 * 109.47023 * 59.99943 * 11 10 8 40 40 H 1.08995 * 109.47494 * 60.00271 * 14 12 11 41 41 H 1.09005 * 109.46920 * 180.02562 * 14 12 11 42 42 H 1.09001 * 109.47478 * 299.99716 * 14 12 11 43 43 H 1.00905 * 111.00220 * 81.04715 * 15 12 11 44 44 H 1.09006 * 109.46948 * 300.00015 * 16 15 12 45 45 H 1.08998 * 109.47110 * 60.00129 * 16 15 12 46 46 H 0.96999 * 119.99796 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99963 * 180.02562 * 23 22 20 48 48 H 1.07994 * 126.56689 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7679 -0.3371 2.4836 6 7 2.3630 -1.1794 3.2778 7 6 3.0171 -2.1029 2.5280 8 6 3.8156 -3.2313 3.0374 9 8 4.3563 -3.9939 2.2594 10 7 3.9469 -3.4184 4.3657 11 6 4.7414 -4.5402 4.8723 12 6 4.7281 -4.5248 6.4022 13 1 5.2335 -3.6281 6.7609 14 6 5.4520 -5.7645 6.9310 15 7 3.3389 -4.5280 6.8798 16 6 3.2417 -3.9353 8.2204 17 6 1.8055 -3.9565 8.6762 18 8 0.9471 -4.4194 7.9550 19 7 1.4747 -3.4611 9.8852 20 6 0.1680 -3.4800 10.2996 21 1 -0.5962 -3.8921 9.6574 22 6 -0.1731 -2.9688 11.5458 23 7 0.7570 -2.4677 12.3275 24 14 -1.9536 -2.9938 12.1102 25 1 -2.2263 -4.2627 12.8319 26 1 -2.2013 -1.8450 13.0180 27 1 -2.8485 -2.8937 10.9294 28 6 2.7955 -1.7990 1.2166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.1712 0.5065 2.7976 37 1 3.5153 -2.8105 4.9862 38 1 4.3154 -5.4778 4.5151 39 1 5.7676 -4.4485 4.5166 40 1 6.4828 -5.7621 6.5767 41 1 5.4421 -5.7537 8.0210 42 1 4.9466 -6.6611 6.5724 43 1 2.9546 -5.4609 6.8682 44 1 3.8521 -4.5102 8.9170 45 1 3.5982 -2.9057 8.1892 46 1 2.1611 -3.0906 10.4619 47 1 0.5190 -2.1112 13.1976 48 1 3.1699 -2.3381 0.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491537938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:11 Heat of formation + Delta-G solvation = -19.148525 kcal Electronic energy + Delta-G solvation = -28512.077224 eV Core-core repulsion = 24409.774420 eV Total energy + Delta-G solvation = -4102.302804 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.35209 -39.23106 -38.30243 -36.79992 -36.30469 -34.01788 -33.58590 -31.43826 -31.20084 -30.61717 -29.65519 -27.88808 -26.53865 -26.11321 -23.92256 -23.39931 -22.84479 -20.87904 -20.65906 -19.61655 -19.22019 -17.87827 -17.71968 -16.60252 -16.09311 -15.89698 -15.70904 -15.41655 -14.98019 -14.89420 -14.49752 -14.31365 -14.28442 -14.05148 -13.84888 -13.70020 -13.40407 -13.18164 -12.95210 -12.84468 -12.75177 -12.44223 -12.37691 -12.10925 -11.95655 -11.78126 -11.62129 -11.50637 -11.33262 -11.00927 -10.88171 -10.36301 -10.29463 -10.17543 -9.92310 -9.88284 -9.46410 -8.88322 -8.57018 -8.41710 -8.01004 -7.90842 -6.37513 -3.77855 1.56588 2.36363 2.41411 3.20654 3.28910 3.35311 3.48731 3.71486 3.96581 3.99948 4.12994 4.31425 4.34990 4.38985 4.45012 4.54317 4.89750 4.93673 5.01349 5.06001 5.12750 5.15227 5.19715 5.21113 5.27856 5.34223 5.39932 5.47525 5.56432 5.59125 5.72042 5.79981 5.84196 5.94639 5.98817 6.09388 6.12755 6.33018 6.36926 6.71125 6.88477 7.24880 7.59408 7.65188 7.70115 7.98324 8.11130 8.50612 8.66442 9.22713 9.59529 10.11469 10.80391 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.002541 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.639872 B =11015.266152 C =13521.038670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.126 3.874 3 C -0.164 4.164 4 N -0.454 5.454 5 C 0.187 3.813 6 N -0.454 5.454 7 C -0.059 4.059 8 C 0.601 3.399 9 O -0.561 6.561 10 N -0.696 5.696 11 C 0.134 3.866 12 C 0.068 3.932 13 H 0.084 0.916 14 C -0.180 4.180 15 N -0.662 5.662 16 C 0.050 3.950 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.279 1.279 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.028 3.972 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.207 0.793 37 H 0.418 0.582 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.352 0.648 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.384 6.519 -22.273 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.023 3.977 3 C -0.222 4.222 4 N -0.137 5.137 5 C -0.097 4.097 6 N -0.172 5.172 7 C -0.188 4.188 8 C 0.387 3.613 9 O -0.441 6.441 10 N -0.346 5.346 11 C 0.010 3.990 12 C -0.043 4.043 13 H 0.102 0.898 14 C -0.240 4.240 15 N -0.294 5.294 16 C -0.082 4.082 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.202 5.202 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.205 1.205 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.110 4.110 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.224 0.776 37 H 0.256 0.744 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.172 0.828 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 6.937 6.409 -22.637 24.528 hybrid contribution -0.339 -0.113 0.803 0.878 sum 6.599 6.296 -21.834 23.662 Atomic orbital electron populations 1.22202 0.92803 1.03628 1.03676 1.21554 0.95814 0.94154 0.86180 1.22189 1.02293 0.94013 1.03672 1.45665 1.37940 1.21822 1.08227 1.25053 1.03979 1.02091 0.78557 1.70705 1.10332 1.03774 1.32410 1.20587 1.07401 1.00380 0.90429 1.16897 0.79301 0.82637 0.82458 1.90755 1.49646 1.46713 1.56978 1.45602 1.51804 1.30688 1.06528 1.21334 0.95132 0.89994 0.92564 1.21849 0.89746 0.98626 0.94044 0.89781 1.22435 1.01231 0.98535 1.01771 1.60146 1.15901 1.28648 1.24753 1.21711 0.96479 1.00410 0.89611 1.19820 0.89573 0.84608 0.83260 1.90535 1.50588 1.50471 1.54867 1.41857 1.09692 1.53798 1.14864 1.19693 0.84880 1.37450 1.00611 0.87983 1.25250 0.99791 0.96925 0.96050 1.69617 1.33215 1.40895 1.10744 0.85869 0.82208 0.77658 0.78622 1.20490 1.20962 1.19414 1.22538 0.98129 0.90738 0.99629 0.91261 0.91457 0.90275 0.87972 0.91309 0.91582 0.90273 0.77626 0.74441 0.91562 0.91420 0.91877 0.91978 0.92003 0.82761 0.93810 0.89578 0.77503 0.91948 0.79835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 9.24 37.16 0.34 -0.38 16 2 C 0.13 0.63 3.57 -67.93 -0.24 0.39 16 3 C -0.16 -0.63 9.24 37.16 0.34 -0.28 16 4 N -0.45 -4.01 2.59 -111.25 -0.29 -4.30 16 5 C 0.19 1.99 11.52 -89.91 -1.04 0.95 16 6 N -0.45 -6.61 11.01 -11.03 -0.12 -6.73 16 7 C -0.06 -0.85 6.98 -83.09 -0.58 -1.43 16 8 C 0.60 9.71 7.81 -12.57 -0.10 9.61 16 9 O -0.56 -10.06 16.88 5.25 0.09 -9.97 16 10 N -0.70 -10.54 5.39 -61.41 -0.33 -10.87 16 11 C 0.13 1.77 5.37 -4.04 -0.02 1.75 16 12 C 0.07 0.85 2.75 -67.72 -0.19 0.66 16 13 H 0.08 0.99 7.80 -51.93 -0.40 0.59 16 14 C -0.18 -1.89 9.16 37.15 0.34 -1.55 16 15 N -0.66 -10.64 5.32 -107.99 -0.57 -11.21 16 16 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 17 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 18 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 19 N -0.57 -14.46 5.29 -10.96 -0.06 -14.52 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.46 -0.10 0.48 16 23 N -0.90 -24.81 13.05 55.50 0.72 -24.08 16 24 Si 0.93 21.31 29.55 -169.99 -5.02 16.28 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.03 0.32 11.22 -16.64 -0.19 0.13 16 29 H 0.07 0.32 7.94 -51.93 -0.41 -0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.07 0.27 7.94 -51.93 -0.41 -0.14 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.42 6.71 7.85 -40.82 -0.32 6.39 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 42 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.35 6.00 8.17 -39.29 -0.32 5.68 16 44 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 45 H 0.09 1.40 8.06 -51.93 -0.42 0.98 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 48 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 407.31 15.07 6.14 6.14 Total: -1.00 -35.60 407.31 -8.58 -44.18 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -7.54 Total: 17.93 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: -1.68 Total: 13.09 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -0.65 Total: -71.72 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: 0.18 Total: -25.89 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.60 -8.58 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491537938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.027 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds