Wall clock time and date at job start Tue Mar 31 2020 20:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46500 * 109.47473 * 120.00116 * 2 1 3 5 5 C 1.35844 * 126.13491 * 300.02601 * 4 2 1 6 6 N 1.30170 * 109.00210 * 179.97438 * 5 4 2 7 7 C 1.35752 * 108.86952 * 0.02562 * 6 5 4 8 8 C 1.47323 * 126.23937 * 179.97438 * 7 6 5 9 9 O 1.21626 * 120.00452 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99598 * 0.02562 * 8 7 6 11 11 C 1.46504 * 119.99836 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47285 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.46740 * 295.00168 * 12 11 10 14 14 C 1.52991 * 109.47066 * 175.00000 * 12 11 10 15 15 N 1.46899 * 109.46944 * 54.99757 * 12 11 10 16 16 C 1.46902 * 111.00055 * 205.00235 * 15 12 11 17 17 C 1.50696 * 109.47162 * 180.02562 * 16 15 12 18 18 O 1.21291 * 120.00170 * 359.97438 * 17 16 15 19 19 N 1.34783 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37092 * 119.99804 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00496 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99807 * 180.02562 * 20 19 17 23 23 N 1.31418 * 119.99847 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00278 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46908 * 89.99656 * 24 22 20 26 26 H 1.48496 * 109.47537 * 209.99389 * 24 22 20 27 27 H 1.48505 * 109.46910 * 329.99918 * 24 22 20 28 28 C 1.35380 * 126.13118 * 119.71403 * 4 2 1 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 36 36 H 1.08001 * 125.50058 * 359.97438 * 5 4 2 37 37 H 0.96999 * 120.00322 * 0.02562 * 10 8 7 38 38 H 1.09006 * 109.47186 * 300.00059 * 11 10 8 39 39 H 1.09002 * 109.47023 * 59.99943 * 11 10 8 40 40 H 1.08995 * 109.47494 * 60.00271 * 14 12 11 41 41 H 1.09005 * 109.46920 * 180.02562 * 14 12 11 42 42 H 1.09001 * 109.47478 * 299.99716 * 14 12 11 43 43 H 1.00905 * 111.00220 * 81.04715 * 15 12 11 44 44 H 1.09006 * 109.46948 * 300.00015 * 16 15 12 45 45 H 1.08998 * 109.47110 * 60.00129 * 16 15 12 46 46 H 0.96999 * 119.99796 * 0.02562 * 19 17 16 47 47 H 0.97001 * 119.99963 * 180.02562 * 23 22 20 48 48 H 1.07994 * 126.56689 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7679 -0.3371 2.4836 6 7 2.3630 -1.1794 3.2778 7 6 3.0171 -2.1029 2.5280 8 6 3.8156 -3.2313 3.0374 9 8 4.3563 -3.9939 2.2594 10 7 3.9469 -3.4184 4.3657 11 6 4.7414 -4.5402 4.8723 12 6 4.7281 -4.5248 6.4022 13 1 5.2335 -3.6281 6.7609 14 6 5.4520 -5.7645 6.9310 15 7 3.3389 -4.5280 6.8798 16 6 3.2417 -3.9353 8.2204 17 6 1.8055 -3.9565 8.6762 18 8 0.9471 -4.4194 7.9550 19 7 1.4747 -3.4611 9.8852 20 6 0.1680 -3.4800 10.2996 21 1 -0.5962 -3.8921 9.6574 22 6 -0.1731 -2.9688 11.5458 23 7 0.7570 -2.4677 12.3275 24 14 -1.9536 -2.9938 12.1102 25 1 -2.2263 -4.2627 12.8319 26 1 -2.2013 -1.8450 13.0180 27 1 -2.8485 -2.8937 10.9294 28 6 2.7955 -1.7990 1.2166 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.1712 0.5065 2.7976 37 1 3.5153 -2.8105 4.9862 38 1 4.3154 -5.4778 4.5151 39 1 5.7676 -4.4485 4.5166 40 1 6.4828 -5.7621 6.5767 41 1 5.4421 -5.7537 8.0210 42 1 4.9466 -6.6611 6.5724 43 1 2.9546 -5.4609 6.8682 44 1 3.8521 -4.5102 8.9170 45 1 3.5982 -2.9057 8.1892 46 1 2.1611 -3.0906 10.4619 47 1 0.5190 -2.1112 13.1976 48 1 3.1699 -2.3381 0.3590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491537938.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:10 Heat of formation + Delta-G solvation = -45.669848 kcal Electronic energy + Delta-G solvation = -28513.227275 eV Core-core repulsion = 24409.774420 eV Total energy + Delta-G solvation = -4103.452855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.19460 -40.46526 -40.05320 -38.09348 -36.90744 -35.95452 -34.94236 -33.25966 -32.22250 -31.79431 -30.58012 -28.20133 -27.95351 -27.38834 -25.67542 -24.02539 -23.86202 -21.96907 -21.44994 -21.09556 -20.62090 -19.90192 -18.53430 -17.81888 -17.30004 -17.16294 -16.80163 -16.61199 -16.41109 -16.22699 -15.77057 -15.57698 -15.28260 -15.10857 -14.96449 -14.79296 -14.62492 -14.31425 -13.97387 -13.69285 -13.63052 -13.41970 -13.33627 -13.17505 -13.10724 -13.05714 -12.76795 -12.51801 -12.39603 -12.37731 -12.16129 -12.11414 -11.88712 -11.49043 -11.30128 -11.00227 -10.73724 -10.32526 -10.03074 -9.99214 -9.53885 -9.30538 -8.45017 -5.93306 0.61195 1.38543 1.41930 1.47158 1.54943 1.68110 2.08343 2.30019 2.41578 2.60826 2.92633 3.22446 3.47568 3.55126 3.60567 3.84001 3.86941 3.94325 4.09457 4.12086 4.21751 4.33046 4.36670 4.45536 4.49213 4.62666 4.65246 4.67529 4.68081 4.78785 4.82616 4.85656 4.91038 5.00888 5.04962 5.24660 5.25849 5.26929 5.42434 5.50422 5.55593 5.91046 6.11750 6.14013 6.39641 6.59375 6.62683 6.93461 7.14942 7.31553 7.58937 8.14962 8.72482 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.002541 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.639872 B =11015.266152 C =13521.038670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.120 3.880 3 C -0.160 4.160 4 N -0.442 5.442 5 C 0.191 3.809 6 N -0.498 5.498 7 C -0.100 4.100 8 C 0.594 3.406 9 O -0.589 6.589 10 N -0.697 5.697 11 C 0.135 3.865 12 C 0.077 3.923 13 H 0.097 0.903 14 C -0.174 4.174 15 N -0.676 5.676 16 C 0.067 3.933 17 C 0.438 3.562 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.042 3.958 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.102 0.898 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.236 0.764 37 H 0.413 0.587 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.345 0.655 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.634 7.747 -22.974 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 C -0.217 4.217 4 N -0.124 5.124 5 C -0.093 4.093 6 N -0.217 5.217 7 C -0.229 4.229 8 C 0.381 3.619 9 O -0.471 6.471 10 N -0.346 5.346 11 C 0.010 3.990 12 C -0.033 4.033 13 H 0.115 0.885 14 C -0.233 4.233 15 N -0.309 5.309 16 C -0.065 4.065 17 C 0.226 3.774 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.461 4.461 21 H 0.094 0.906 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.099 4.099 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.252 0.748 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.164 0.836 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 7.217 7.661 -23.334 25.598 hybrid contribution -0.428 -0.444 0.920 1.108 sum 6.789 7.217 -22.414 24.506 Atomic orbital electron populations 1.22204 0.92076 1.02941 1.04796 1.21929 0.96312 0.94774 0.85032 1.22181 1.01650 0.93091 1.04801 1.45922 1.36585 1.20886 1.08973 1.25577 1.02979 1.01816 0.78957 1.70613 1.11929 1.05014 1.34163 1.20579 1.09338 1.01093 0.91850 1.17236 0.79174 0.82915 0.82529 1.90713 1.51044 1.47884 1.57455 1.45686 1.51730 1.30858 1.06308 1.21432 0.95467 0.88969 0.93086 1.21863 0.87942 1.00289 0.93247 0.88538 1.22369 1.02108 0.97160 1.01684 1.60102 1.18553 1.28258 1.23957 1.21552 0.92017 1.02123 0.90785 1.20915 0.91908 0.82498 0.82075 1.90504 1.52760 1.51854 1.55832 1.41919 1.09044 1.54449 1.15705 1.19634 0.85785 1.39373 1.01352 0.90555 1.26021 1.03838 0.95912 0.95520 1.69674 1.34798 1.40652 1.11043 0.84949 0.77198 0.78288 0.78028 1.19645 1.19447 1.19892 1.22803 0.97209 0.90900 0.99011 0.91438 0.93002 0.87898 0.86323 0.91350 0.92532 0.88002 0.74817 0.75042 0.92672 0.90024 0.89744 0.91859 0.92230 0.83605 0.91239 0.87763 0.76967 0.91328 0.78077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.24 71.98 0.67 -0.41 16 2 C 0.12 0.94 3.57 44.99 0.16 1.10 16 3 C -0.16 -0.83 9.24 71.98 0.67 -0.16 16 4 N -0.44 -7.32 2.59 -505.88 -1.31 -8.63 16 5 C 0.19 3.95 11.52 180.10 2.08 6.02 16 6 N -0.50 -14.78 11.01 -188.82 -2.08 -16.86 16 7 C -0.10 -3.00 6.98 40.51 0.28 -2.71 16 8 C 0.59 19.82 7.81 86.63 0.68 20.49 16 9 O -0.59 -21.65 16.88 -4.11 -0.07 -21.72 16 10 N -0.70 -21.61 5.39 -466.43 -2.51 -24.12 16 11 C 0.13 3.52 5.37 86.38 0.46 3.99 16 12 C 0.08 1.81 2.75 44.91 0.12 1.93 16 13 H 0.10 2.08 7.80 -2.39 -0.02 2.06 16 14 C -0.17 -3.32 9.16 71.98 0.66 -2.66 16 15 N -0.68 -21.55 5.32 -495.58 -2.63 -24.18 16 16 C 0.07 2.30 5.97 85.56 0.51 2.81 16 17 C 0.44 21.19 7.82 87.65 0.69 21.88 16 18 O -0.62 -35.44 15.78 -3.06 -0.05 -35.49 16 19 N -0.57 -29.85 5.29 -306.98 -1.62 -31.47 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.70 16 22 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.14 13.05 21.67 0.28 -49.86 16 24 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.04 0.93 11.22 83.72 0.94 1.87 16 29 H 0.07 0.49 7.94 -2.39 -0.02 0.47 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.22 8.14 -2.38 -0.02 0.20 16 32 H 0.12 0.58 8.07 -2.39 -0.02 0.56 16 33 H 0.07 0.38 7.94 -2.39 -0.02 0.36 16 34 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.24 3.11 8.06 -2.91 -0.02 3.08 16 37 H 0.41 13.63 7.85 -92.71 -0.73 12.90 16 38 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.22 7.45 -2.38 -0.02 1.20 16 42 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 43 H 0.34 11.86 8.17 -89.69 -0.73 11.12 16 44 H 0.07 2.05 7.44 -2.38 -0.02 2.03 16 45 H 0.10 3.22 8.06 -2.39 -0.02 3.20 16 46 H 0.40 19.51 7.90 -92.71 -0.73 18.78 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -79.54 407.31 0.03 -79.52 By element: Atomic # 1 Polarization: 52.91 SS G_CDS: -1.20 Total: 51.71 kcal Atomic # 6 Polarization: 26.35 SS G_CDS: 9.19 Total: 35.54 kcal Atomic # 7 Polarization: -145.24 SS G_CDS: -9.87 Total: -155.12 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.12 Total: -57.21 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.54 0.03 -79.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491537938.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.846 kcal (2) G-P(sol) polarization free energy of solvation -79.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds