Wall clock time and date at job start Tue Mar 31 2020 20:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.46940 * 59.99787 * 8 6 5 10 10 C 1.52997 * 109.47407 * 300.00097 * 8 6 5 11 11 C 1.50697 * 109.47135 * 179.97438 * 8 6 5 12 12 C 1.39872 * 126.03878 * 60.01932 * 11 8 6 13 13 N 1.30830 * 108.20206 * 179.97438 * 12 11 8 14 14 N 1.40089 * 108.21001 * 0.02562 * 13 12 11 15 15 C 1.46493 * 126.03744 * 179.97438 * 14 13 12 16 16 C 1.34947 * 107.91994 * 359.75504 * 14 13 12 17 17 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 18 18 C 1.46895 * 111.00561 * 275.00137 * 17 2 1 19 19 C 1.50699 * 109.47505 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99607 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99820 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00168 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99647 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00321 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99765 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46869 * 89.99848 * 26 24 22 28 28 H 1.48497 * 109.47164 * 209.99992 * 26 24 22 29 29 H 1.48500 * 109.46943 * 329.99852 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.47198 * 60.00019 * 10 8 6 37 37 H 1.09001 * 109.47187 * 180.02562 * 10 8 6 38 38 H 1.09003 * 109.46799 * 300.00321 * 10 8 6 39 39 H 1.08000 * 125.89808 * 0.02562 * 12 11 8 40 40 H 1.08996 * 109.47493 * 89.97533 * 15 14 13 41 41 H 1.09005 * 109.47017 * 209.97398 * 15 14 13 42 42 H 1.09004 * 109.47416 * 329.96821 * 15 14 13 43 43 H 1.08001 * 126.12592 * 180.24242 * 16 14 13 44 44 H 1.00902 * 110.99927 * 151.04624 * 17 2 1 45 45 H 1.09004 * 109.46925 * 300.00216 * 18 17 2 46 46 H 1.09001 * 109.46797 * 59.99650 * 18 17 2 47 47 H 0.97001 * 120.00239 * 359.97438 * 21 19 18 48 48 H 0.96999 * 119.99987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 1 5.9638 -2.0989 -1.2433 10 6 6.2847 -0.1341 -2.0663 11 6 6.1775 -2.2464 -3.3613 12 6 6.0011 -1.8265 -4.6838 13 7 6.5765 -2.6997 -5.4700 14 7 7.1376 -3.7048 -4.6716 15 6 7.8747 -4.8761 -5.1520 16 6 6.8834 -3.4007 -3.3816 17 7 2.0196 -0.6924 1.1995 18 6 2.0824 0.2226 2.3469 19 6 2.5885 -0.5214 3.5558 20 8 2.8688 -1.6984 3.4700 21 7 2.7286 0.1207 4.7324 22 6 3.1885 -0.5564 5.8323 23 1 3.4381 -1.6043 5.7560 24 6 3.3335 0.1058 7.0453 25 7 3.0303 1.3811 7.1381 26 14 3.9594 -0.8168 8.5441 27 1 5.4404 -0.7238 8.5997 28 1 3.3792 -0.2172 9.7725 29 1 3.5561 -2.2430 8.4514 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 5.9213 0.3795 -1.1761 37 1 7.3711 -0.2119 -2.0233 38 1 5.9960 0.4289 -2.9539 39 1 5.4806 -0.9349 -5.0010 40 1 8.9355 -4.6352 -5.2198 41 1 7.7339 -5.7041 -4.4571 42 1 7.5031 -5.1607 -6.1364 43 1 7.1869 -3.9767 -2.5199 44 1 2.9173 -1.1204 1.0288 45 1 2.7588 1.0463 2.1182 46 1 1.0870 0.6164 2.5525 47 1 2.5041 1.0619 4.8011 48 1 3.1318 1.8434 7.9847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491699959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:11 Heat of formation + Delta-G solvation = 5.341201 kcal Electronic energy + Delta-G solvation = -28587.341618 eV Core-core repulsion = 24486.100769 eV Total energy + Delta-G solvation = -4101.240850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48730 -39.80327 -38.43516 -36.98354 -34.63059 -34.12973 -33.71596 -32.73328 -31.32351 -30.80265 -29.63211 -26.89972 -26.70277 -26.16404 -24.27576 -23.82658 -21.39903 -21.08376 -20.63947 -19.81214 -19.29163 -17.96199 -17.49972 -16.76710 -16.32493 -15.97953 -15.62714 -15.58058 -15.36665 -14.82238 -14.57509 -14.47766 -14.15927 -13.99875 -13.83587 -13.46570 -13.19476 -13.09098 -12.88086 -12.75591 -12.66038 -12.54750 -12.31713 -11.94229 -11.91038 -11.75849 -11.71025 -11.63449 -11.42432 -11.09939 -10.85999 -10.67807 -10.42034 -10.24883 -9.81889 -9.54266 -9.53370 -9.13510 -8.56634 -8.50153 -8.14574 -7.99677 -6.44990 -3.85867 1.71032 2.33242 2.57713 2.64647 3.15191 3.20122 3.24393 3.30276 3.86449 4.03186 4.24751 4.26789 4.54212 4.62190 4.67859 4.79114 4.82759 4.94054 4.97868 5.05491 5.08542 5.16390 5.20575 5.22867 5.30034 5.46603 5.49586 5.55694 5.67772 5.68174 5.76656 5.77145 5.85310 5.94499 5.98981 5.99943 6.18906 6.27172 6.39376 6.48025 6.79744 7.14353 7.39150 7.52105 7.54008 7.56769 8.02798 8.18509 8.57542 9.14556 9.50628 10.01837 10.72597 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.002151 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.927639 B =13013.968843 C =14471.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.732 5.732 6 C 0.520 3.480 7 O -0.532 6.532 8 C -0.032 4.032 9 H 0.104 0.896 10 C -0.139 4.139 11 C -0.216 4.216 12 C 0.081 3.919 13 N -0.303 5.303 14 N -0.380 5.380 15 C 0.103 3.897 16 C 0.062 3.938 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.177 0.823 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.174 0.826 44 H 0.347 0.653 45 H 0.044 0.956 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -2.070 -20.503 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.054 4.054 9 H 0.122 0.878 10 C -0.197 4.197 11 C -0.228 4.228 12 C -0.106 4.106 13 N -0.124 5.124 14 N -0.162 5.162 15 C -0.038 4.038 16 C -0.085 4.085 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.194 0.806 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.191 0.809 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.079 -3.795 -22.192 23.321 hybrid contribution 0.907 1.111 2.016 2.474 sum 6.986 -2.684 -20.176 21.520 Atomic orbital electron populations 1.21737 0.93473 1.02939 1.01508 1.21807 0.97082 0.95917 0.89065 0.93356 1.21573 0.79512 1.01903 0.97466 1.46074 1.07964 1.60553 1.23980 1.20576 0.89753 0.77081 0.82000 1.90701 1.70157 1.46761 1.33116 1.19527 0.91121 0.97939 0.96842 0.87823 1.21767 1.01600 0.93927 1.02371 1.19410 1.09683 0.99157 0.94565 1.23577 0.97304 0.98621 0.91054 1.77350 1.16759 0.99495 1.18842 1.48373 1.43693 1.19964 1.04131 1.21824 0.95749 0.84225 1.02009 1.22280 1.00305 0.97514 0.88357 1.60115 1.34823 1.32273 1.02721 1.21755 1.01490 0.93790 0.91296 1.19798 0.85066 0.88214 0.84462 1.90531 1.55347 1.16078 1.84749 1.41866 1.57666 1.12447 1.07959 1.19698 1.39966 0.96435 0.86798 0.87919 1.25267 0.97639 0.95793 0.99249 1.69607 1.48533 1.08849 1.27241 0.85859 0.78750 0.79537 0.80161 1.20420 1.20920 1.19400 0.91547 0.92508 0.92025 0.90470 0.90928 0.76648 0.91883 0.91256 0.92033 0.80571 0.90882 0.89523 0.89384 0.80924 0.83141 0.93853 0.89419 0.77462 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.41 37.16 0.35 -1.14 16 2 C 0.07 0.81 2.81 -67.72 -0.19 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.33 5.31 -4.05 -0.02 1.31 16 5 N -0.73 -7.82 4.88 -60.30 -0.29 -8.11 16 6 C 0.52 6.22 7.11 -10.98 -0.08 6.14 16 7 O -0.53 -8.31 15.37 5.56 0.09 -8.22 16 8 C -0.03 -0.30 3.09 -92.93 -0.29 -0.59 16 9 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 10 C -0.14 -1.05 8.98 37.16 0.33 -0.72 16 11 C -0.22 -2.34 4.37 -105.05 -0.46 -2.80 16 12 C 0.08 0.97 10.77 -17.37 -0.19 0.78 16 13 N -0.30 -3.87 12.57 30.62 0.39 -3.49 16 14 N -0.38 -3.86 4.01 -68.16 -0.27 -4.14 16 15 C 0.10 0.59 11.47 59.84 0.69 1.28 16 16 C 0.06 0.59 11.38 -17.22 -0.20 0.39 16 17 N -0.66 -9.96 5.93 -108.00 -0.64 -10.60 16 18 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 19 C 0.44 9.95 7.82 -10.99 -0.09 9.86 16 20 O -0.58 -15.33 15.78 5.54 0.09 -15.24 16 21 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 22 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 23 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.00 13.05 55.50 0.72 -23.27 16 26 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 27 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.77 6.79 -40.82 -0.28 3.49 16 36 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 39 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.35 5.31 6.41 -39.29 -0.25 5.06 16 45 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 46 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 48 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -35.46 403.68 -6.74 -42.21 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -7.42 Total: 14.88 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.40 Total: 8.13 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.16 Total: -63.47 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.46 -6.74 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.550 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds