Wall clock time and date at job start Tue Mar 31 2020 20:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 N 1.46499 * 109.47658 * 184.99947 * 4 2 1 6 6 C 1.34782 * 120.00273 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 H 1.09004 * 109.46940 * 59.99787 * 8 6 5 10 10 C 1.52997 * 109.47407 * 300.00097 * 8 6 5 11 11 C 1.50697 * 109.47135 * 179.97438 * 8 6 5 12 12 C 1.39872 * 126.03878 * 60.01932 * 11 8 6 13 13 N 1.30830 * 108.20206 * 179.97438 * 12 11 8 14 14 N 1.40089 * 108.21001 * 0.02562 * 13 12 11 15 15 C 1.46493 * 126.03744 * 179.97438 * 14 13 12 16 16 C 1.34947 * 107.91994 * 359.75504 * 14 13 12 17 17 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 18 18 C 1.46895 * 111.00561 * 275.00137 * 17 2 1 19 19 C 1.50699 * 109.47505 * 180.02562 * 18 17 2 20 20 O 1.21295 * 119.99607 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00043 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99820 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00168 * 359.97438 * 22 21 19 24 24 C 1.38955 * 119.99647 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00321 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99765 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46869 * 89.99848 * 26 24 22 28 28 H 1.48497 * 109.47164 * 209.99992 * 26 24 22 29 29 H 1.48500 * 109.46943 * 329.99852 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 33 33 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 34 34 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 35 35 H 0.97002 * 119.99938 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.47198 * 60.00019 * 10 8 6 37 37 H 1.09001 * 109.47187 * 180.02562 * 10 8 6 38 38 H 1.09003 * 109.46799 * 300.00321 * 10 8 6 39 39 H 1.08000 * 125.89808 * 0.02562 * 12 11 8 40 40 H 1.08996 * 109.47493 * 89.97533 * 15 14 13 41 41 H 1.09005 * 109.47017 * 209.97398 * 15 14 13 42 42 H 1.09004 * 109.47416 * 329.96821 * 15 14 13 43 43 H 1.08001 * 126.12592 * 180.24242 * 16 14 13 44 44 H 1.00902 * 110.99927 * 151.04624 * 17 2 1 45 45 H 1.09004 * 109.46925 * 300.00216 * 18 17 2 46 46 H 1.09001 * 109.46797 * 59.99650 * 18 17 2 47 47 H 0.97001 * 120.00239 * 359.97438 * 21 19 18 48 48 H 0.96999 * 119.99987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 7 3.5001 -0.8264 -1.1905 6 6 4.1732 -1.4283 -2.1911 7 8 3.5701 -1.8825 -3.1403 8 6 5.6751 -1.5359 -2.1310 9 1 5.9638 -2.0989 -1.2433 10 6 6.2847 -0.1341 -2.0663 11 6 6.1775 -2.2464 -3.3613 12 6 6.0011 -1.8265 -4.6838 13 7 6.5765 -2.6997 -5.4700 14 7 7.1376 -3.7048 -4.6716 15 6 7.8747 -4.8761 -5.1520 16 6 6.8834 -3.4007 -3.3816 17 7 2.0196 -0.6924 1.1995 18 6 2.0824 0.2226 2.3469 19 6 2.5885 -0.5214 3.5558 20 8 2.8688 -1.6984 3.4700 21 7 2.7286 0.1207 4.7324 22 6 3.1885 -0.5564 5.8323 23 1 3.4381 -1.6043 5.7560 24 6 3.3335 0.1058 7.0453 25 7 3.0303 1.3811 7.1381 26 14 3.9594 -0.8168 8.5441 27 1 5.4404 -0.7238 8.5997 28 1 3.3792 -0.2172 9.7725 29 1 3.5561 -2.2430 8.4514 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1584 -2.1369 35 1 3.9824 -0.4628 -0.4315 36 1 5.9213 0.3795 -1.1761 37 1 7.3711 -0.2119 -2.0233 38 1 5.9960 0.4289 -2.9539 39 1 5.4806 -0.9349 -5.0010 40 1 8.9355 -4.6352 -5.2198 41 1 7.7339 -5.7041 -4.4571 42 1 7.5031 -5.1607 -6.1364 43 1 7.1869 -3.9767 -2.5199 44 1 2.9173 -1.1204 1.0288 45 1 2.7588 1.0463 2.1182 46 1 1.0870 0.6164 2.5525 47 1 2.5041 1.0619 4.8011 48 1 3.1318 1.8434 7.9847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491699959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:10 Heat of formation + Delta-G solvation = -22.164529 kcal Electronic energy + Delta-G solvation = -28588.534356 eV Core-core repulsion = 24486.100769 eV Total energy + Delta-G solvation = -4102.433588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25681 -40.76292 -40.09978 -38.17366 -35.94588 -35.41153 -34.85264 -33.48250 -33.22596 -31.94876 -30.34893 -28.13203 -27.46943 -27.25539 -25.72386 -24.82044 -22.21280 -21.85706 -21.61165 -21.11517 -20.57487 -19.88194 -18.45364 -17.67956 -17.55521 -16.95486 -16.86243 -16.63301 -16.34183 -16.26068 -15.92348 -15.57338 -15.31422 -15.13367 -14.86107 -14.72694 -14.25172 -13.92879 -13.69889 -13.64191 -13.50878 -13.45532 -13.37972 -13.25984 -13.10015 -12.90253 -12.77983 -12.60197 -12.47204 -12.45163 -12.37915 -12.10962 -11.84213 -11.47606 -11.46214 -10.75842 -10.32309 -10.30648 -10.07377 -9.98293 -9.33274 -9.31807 -8.44084 -5.92208 0.96375 1.39837 1.44161 1.56299 1.68580 1.72239 1.77567 2.08624 2.30356 2.35402 2.91350 3.23746 3.52490 3.60316 3.73405 3.80900 4.01627 4.19461 4.22718 4.26123 4.30236 4.38364 4.43075 4.44881 4.46948 4.50294 4.63982 4.67692 4.69010 4.82375 4.85278 4.88303 4.95488 5.01294 5.07966 5.18751 5.34095 5.36763 5.44013 5.50517 5.68014 5.91662 6.12549 6.16081 6.40735 6.53058 6.63265 6.74460 7.15897 7.28732 7.60046 8.15256 8.73063 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.002151 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.927639 B =13013.968843 C =14471.963791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.518 3.482 7 O -0.573 6.573 8 C -0.025 4.025 9 H 0.119 0.881 10 C -0.134 4.134 11 C -0.235 4.235 12 C 0.066 3.934 13 N -0.341 5.341 14 N -0.382 5.382 15 C 0.094 3.906 16 C 0.063 3.937 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.406 0.594 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.176 0.824 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.086 0.914 43 H 0.206 0.794 44 H 0.344 0.656 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.311 -1.554 -19.998 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.377 5.377 6 C 0.306 3.694 7 O -0.452 6.452 8 C -0.048 4.048 9 H 0.137 0.863 10 C -0.192 4.192 11 C -0.247 4.247 12 C -0.120 4.120 13 N -0.163 5.163 14 N -0.164 5.164 15 C -0.046 4.046 16 C -0.084 4.084 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.198 1.198 29 H -0.199 1.199 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.193 0.807 40 H 0.107 0.893 41 H 0.130 0.870 42 H 0.105 0.895 43 H 0.223 0.777 44 H 0.165 0.835 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.801 -3.240 -21.691 22.962 hybrid contribution 0.669 0.892 1.791 2.110 sum 7.470 -2.349 -19.900 21.385 Atomic orbital electron populations 1.21754 0.92929 1.02388 1.02556 1.21836 0.97358 0.96505 0.87314 0.91198 1.21487 0.79746 1.00930 0.97796 1.46025 1.07823 1.59996 1.23902 1.21058 0.90808 0.76181 0.81370 1.90684 1.71161 1.48614 1.34734 1.19547 0.89139 0.99159 0.96912 0.86272 1.21750 1.02013 0.92753 1.02655 1.19648 1.10505 1.00026 0.94483 1.23706 0.97560 0.98820 0.91898 1.77260 1.18115 1.00731 1.20218 1.48744 1.43259 1.20160 1.04275 1.22168 0.96179 0.83607 1.02660 1.22843 0.99266 0.97204 0.89066 1.60104 1.34892 1.32925 1.03692 1.21614 1.02546 0.93719 0.88919 1.20887 0.83167 0.87972 0.85437 1.90503 1.56634 1.18181 1.85609 1.41929 1.58270 1.12611 1.08192 1.19638 1.41953 0.95904 0.88571 0.90347 1.26003 0.97350 0.96617 1.01314 1.69663 1.48627 1.09623 1.28117 0.84960 0.78549 0.77993 0.77050 1.19511 1.19793 1.19936 0.92944 0.90165 0.92262 0.92490 0.90005 0.75703 0.90785 0.90398 0.92503 0.80694 0.89291 0.86971 0.89524 0.77685 0.83505 0.90796 0.87894 0.76942 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.41 71.98 0.68 -2.01 16 2 C 0.08 1.62 2.81 44.91 0.13 1.75 16 3 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 4 C 0.12 2.63 5.31 86.38 0.46 3.09 16 5 N -0.72 -14.55 4.88 -463.06 -2.26 -16.81 16 6 C 0.52 12.09 7.11 87.66 0.62 12.71 16 7 O -0.57 -18.10 15.37 -3.02 -0.05 -18.14 16 8 C -0.03 -0.45 3.09 -12.29 -0.04 -0.48 16 9 H 0.12 1.72 8.11 -2.39 -0.02 1.70 16 10 C -0.13 -1.83 8.98 71.98 0.65 -1.18 16 11 C -0.23 -4.94 4.37 -20.14 -0.09 -5.03 16 12 C 0.07 1.61 10.77 85.24 0.92 2.53 16 13 N -0.34 -8.85 12.57 -57.03 -0.72 -9.56 16 14 N -0.38 -7.46 4.01 -369.57 -1.48 -8.95 16 15 C 0.09 0.93 11.47 127.77 1.47 2.40 16 16 C 0.06 1.12 11.38 83.54 0.95 2.07 16 17 N -0.68 -19.31 5.93 -495.60 -2.94 -22.24 16 18 C 0.06 1.98 5.97 85.56 0.51 2.49 16 19 C 0.44 19.65 7.82 87.66 0.69 20.34 16 20 O -0.62 -33.04 15.78 -3.08 -0.05 -33.09 16 21 N -0.57 -28.08 5.29 -306.98 -1.62 -29.70 16 22 C -0.33 -18.22 9.68 84.04 0.81 -17.41 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 25 N -0.92 -48.27 13.05 21.66 0.28 -47.99 16 26 Si 0.99 41.90 29.55 68.60 2.03 43.92 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.19 7.45 -2.38 -0.02 1.17 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 6.92 6.79 -92.71 -0.63 6.29 16 36 H 0.07 0.83 7.57 -2.38 -0.02 0.82 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 0.83 8.03 -2.39 -0.02 0.81 16 39 H 0.18 4.01 8.06 -2.91 -0.02 3.98 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 43 H 0.21 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.34 10.09 6.41 -89.69 -0.58 9.51 16 45 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 46 H 0.10 2.91 7.44 -2.39 -0.02 2.90 16 47 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 48 H 0.28 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -78.01 403.68 0.47 -77.54 By element: Atomic # 1 Polarization: 44.91 SS G_CDS: -0.94 Total: 43.97 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 8.22 Total: 21.05 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -8.74 Total: -135.25 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.10 Total: -51.23 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -78.01 0.47 -77.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.371 kcal (2) G-P(sol) polarization free energy of solvation -78.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds