Wall clock time and date at job start Tue Mar 31 2020 20:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.52992 * 109.47207 * 239.99212 * 2 1 3 5 5 N 1.46505 * 109.47363 * 185.00128 * 4 2 1 6 6 C 1.34773 * 120.00116 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46823 * 299.99744 * 8 6 5 10 10 C 1.53004 * 109.47240 * 59.99418 * 8 6 5 11 11 C 1.50703 * 109.47209 * 179.97438 * 8 6 5 12 12 C 1.39863 * 126.03939 * 300.14998 * 11 8 6 13 13 N 1.30837 * 108.19940 * 180.23470 * 12 11 8 14 14 N 1.40080 * 108.20847 * 359.78161 * 13 12 11 15 15 C 1.46501 * 126.03988 * 180.02562 * 14 13 12 16 16 C 1.34953 * 107.92287 * 359.97438 * 14 13 12 17 17 N 1.46899 * 109.46987 * 119.99184 * 2 1 3 18 18 C 1.46899 * 111.00168 * 274.99941 * 17 2 1 19 19 C 1.50700 * 109.47034 * 180.02562 * 18 17 2 20 20 O 1.21293 * 119.99930 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99993 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00040 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00024 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00012 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00411 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00074 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46915 * 59.99734 * 26 24 22 28 28 H 1.48497 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47160 * 300.00165 * 26 24 22 30 30 H 1.09001 * 109.47104 * 300.00740 * 1 2 3 31 31 H 1.08999 * 109.46767 * 60.00357 * 1 2 3 32 32 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46938 * 65.00029 * 4 2 1 34 34 H 1.08994 * 109.47364 * 305.00069 * 4 2 1 35 35 H 0.96998 * 119.99513 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.47351 * 300.00665 * 10 8 6 37 37 H 1.09004 * 109.46492 * 60.00121 * 10 8 6 38 38 H 1.08990 * 109.47399 * 179.97438 * 10 8 6 39 39 H 1.08001 * 125.90034 * 0.02562 * 12 11 8 40 40 H 1.08999 * 109.47001 * 269.97426 * 15 14 13 41 41 H 1.09001 * 109.47118 * 29.97853 * 15 14 13 42 42 H 1.08997 * 109.46734 * 149.97364 * 15 14 13 43 43 H 1.08002 * 126.12372 * 179.97438 * 16 14 13 44 44 H 1.00899 * 111.00073 * 151.04345 * 17 2 1 45 45 H 1.08993 * 109.47260 * 299.99774 * 18 17 2 46 46 H 1.08997 * 109.46831 * 60.00449 * 18 17 2 47 47 H 0.96991 * 119.99895 * 359.97438 * 21 19 18 48 48 H 0.96998 * 120.00541 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8266 -1.1904 6 6 4.1731 -1.4286 -2.1909 7 8 3.5700 -1.8837 -3.1396 8 6 5.6749 -1.5373 -2.1303 9 1 6.1099 -0.5388 -2.0838 10 6 6.0792 -2.3281 -0.8844 11 6 6.1773 -2.2477 -3.3607 12 6 5.8373 -3.5448 -3.7584 13 7 6.4741 -3.8116 -4.8698 14 7 7.2366 -2.6892 -5.2176 15 6 8.1002 -2.5649 -6.3945 16 6 7.0343 -1.7422 -4.2777 17 7 2.0196 -0.6923 1.1995 18 6 2.0824 0.2229 2.3469 19 6 2.5885 -0.5211 3.5558 20 8 2.8687 -1.6981 3.4701 21 7 2.7286 0.1211 4.7324 22 6 3.1885 -0.5558 5.8324 23 1 3.4380 -1.6039 5.7561 24 6 3.3335 0.1064 7.0452 25 7 3.0294 1.3814 7.1382 26 14 3.9607 -0.8158 8.5438 27 1 5.3169 -1.3518 8.2633 28 1 4.0248 0.1095 9.7035 29 1 3.0397 -1.9382 8.8557 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -0.1585 -2.1369 34 1 1.6054 -1.7199 -1.2949 35 1 3.9824 -0.4622 -0.4318 36 1 5.7158 -1.8147 0.0057 37 1 5.6442 -3.3265 -0.9310 38 1 7.1654 -2.4072 -0.8408 39 1 5.1677 -4.2123 -3.2363 40 1 9.1057 -2.9033 -6.1446 41 1 7.7016 -3.1765 -7.2039 42 1 8.1357 -1.5223 -6.7105 43 1 7.4805 -0.7588 -4.2583 44 1 2.9172 -1.1204 1.0289 45 1 2.7588 1.0464 2.1182 46 1 1.0870 0.6166 2.5525 47 1 2.5042 1.0622 4.8010 48 1 3.1302 1.8436 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491699962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:13 Heat of formation + Delta-G solvation = 5.711030 kcal Electronic energy + Delta-G solvation = -28647.774490 eV Core-core repulsion = 24546.549678 eV Total energy + Delta-G solvation = -4101.224813 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.48522 -39.80299 -38.42676 -36.97863 -34.61100 -34.12478 -33.71213 -32.72715 -31.31538 -30.79958 -29.61600 -26.89923 -26.68986 -26.13868 -24.24003 -23.82427 -21.39233 -21.08550 -20.64161 -19.79115 -19.28891 -17.95901 -17.49831 -16.75976 -16.34282 -16.03226 -15.66963 -15.48007 -15.18654 -15.00249 -14.53729 -14.49014 -14.11641 -13.94720 -13.87309 -13.41171 -13.20968 -13.09237 -12.87847 -12.74092 -12.63595 -12.53864 -12.27392 -11.91016 -11.84648 -11.73514 -11.69786 -11.62865 -11.42025 -11.07142 -10.85217 -10.66347 -10.46006 -10.23474 -9.81246 -9.52944 -9.52350 -9.13654 -8.56502 -8.49315 -8.14005 -7.98755 -6.43994 -3.84931 1.70428 2.32968 2.60402 2.62556 3.18512 3.21096 3.24625 3.28959 3.87310 4.03583 4.23946 4.27461 4.54705 4.60325 4.68476 4.78419 4.81720 4.97429 4.99017 5.03833 5.06604 5.18086 5.22869 5.24042 5.30150 5.54216 5.55195 5.58045 5.67906 5.73348 5.77358 5.77944 5.91504 5.94871 5.99408 6.09467 6.19352 6.27476 6.39392 6.49623 6.79263 7.14655 7.39075 7.52863 7.54928 7.57471 8.03490 8.18400 8.58492 9.15413 9.51464 10.02749 10.73507 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.002133 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.068737 B =13124.048189 C =14548.296759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.048 0.952 4 C 0.119 3.881 5 N -0.732 5.732 6 C 0.520 3.480 7 O -0.532 6.532 8 C -0.030 4.030 9 H 0.099 0.901 10 C -0.142 4.142 11 C -0.215 4.215 12 C 0.083 3.917 13 N -0.302 5.302 14 N -0.381 5.381 15 C 0.104 3.896 16 C 0.058 3.942 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.398 0.602 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.179 0.821 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.172 0.828 44 H 0.348 0.652 45 H 0.043 0.957 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.868 1.403 -22.344 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.305 3.695 7 O -0.408 6.408 8 C -0.052 4.052 9 H 0.117 0.883 10 C -0.199 4.199 11 C -0.227 4.227 12 C -0.104 4.104 13 N -0.123 5.123 14 N -0.163 5.163 15 C -0.038 4.038 16 C -0.088 4.088 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.466 6.466 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.196 0.804 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.189 0.811 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.106 0.894 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.336 -0.702 -23.821 24.659 hybrid contribution 0.964 1.717 1.683 2.591 sum 7.300 1.015 -22.137 23.332 Atomic orbital electron populations 1.21737 0.93467 1.02960 1.01488 1.21806 0.97091 0.95890 0.89090 0.93413 1.21575 0.79517 1.01946 0.97427 1.46074 1.07971 1.60553 1.23975 1.20595 0.89817 0.77185 0.81861 1.90702 1.70163 1.46836 1.33052 1.19527 0.91518 1.00364 0.93811 0.88253 1.21792 1.02453 1.00695 0.95003 1.19434 1.06403 0.96584 1.00258 1.23633 0.97565 0.95855 0.93312 1.77373 1.10714 1.07464 1.16786 1.48378 1.36629 1.10929 1.20333 1.21810 0.93025 1.03459 0.85469 1.22220 1.00399 0.95616 0.90533 1.60114 1.34849 1.32239 1.02690 1.21755 1.01476 0.93788 0.91320 1.19796 0.85086 0.88222 0.84455 1.90533 1.55307 1.16050 1.84736 1.41857 1.57685 1.12429 1.07951 1.19651 1.40044 0.96423 0.86823 0.87953 1.25259 0.97630 0.95778 0.99238 1.69598 1.48545 1.08852 1.27288 0.85920 0.79430 0.78856 0.80035 1.19910 1.20997 1.19867 0.92025 0.92543 0.91510 0.91010 0.90379 0.76653 0.91514 0.91700 0.91301 0.80393 0.90881 0.89396 0.89649 0.81104 0.83109 0.93889 0.89430 0.77479 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.41 37.16 0.35 -1.13 16 2 C 0.07 0.81 2.81 -67.72 -0.19 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.09 16 4 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 5 N -0.73 -7.81 4.88 -60.30 -0.29 -8.10 16 6 C 0.52 6.20 7.11 -10.99 -0.08 6.13 16 7 O -0.53 -8.29 15.37 5.56 0.09 -8.20 16 8 C -0.03 -0.28 3.09 -92.92 -0.29 -0.57 16 9 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 10 C -0.14 -1.29 8.98 37.16 0.33 -0.96 16 11 C -0.21 -2.32 4.37 -105.06 -0.46 -2.78 16 12 C 0.08 1.04 10.76 -17.37 -0.19 0.85 16 13 N -0.30 -3.93 12.58 30.62 0.39 -3.55 16 14 N -0.38 -3.80 4.01 -68.16 -0.27 -4.08 16 15 C 0.10 0.56 11.47 59.85 0.69 1.24 16 16 C 0.06 0.53 11.38 -17.22 -0.20 0.34 16 17 N -0.66 -9.92 5.93 -108.00 -0.64 -10.56 16 18 C 0.05 0.81 5.97 -4.98 -0.03 0.78 16 19 C 0.44 9.94 7.82 -10.98 -0.09 9.85 16 20 O -0.58 -15.28 15.78 5.55 0.09 -15.19 16 21 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 22 C -0.30 -8.18 9.68 -14.94 -0.14 -8.32 16 23 H 0.10 2.93 7.16 -52.48 -0.38 2.56 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 26 Si 0.93 20.72 29.55 -169.99 -5.02 15.69 16 27 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.40 3.77 6.79 -40.82 -0.28 3.49 16 36 H 0.07 0.60 7.57 -51.93 -0.39 0.21 16 37 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.35 5.29 6.41 -39.29 -0.25 5.04 16 45 H 0.04 0.62 8.05 -51.93 -0.42 0.20 16 46 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -35.41 403.66 -6.75 -42.15 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -7.42 Total: 15.07 kcal Atomic # 6 Polarization: 8.26 SS G_CDS: -0.40 Total: 7.85 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.16 Total: -63.46 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.41 -6.75 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.864 kcal (2) G-P(sol) polarization free energy of solvation -35.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds