Wall clock time and date at job start Tue Mar 31 2020 20:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47259 * 2 1 4 4 C 1.52992 * 109.47207 * 239.99212 * 2 1 3 5 5 N 1.46505 * 109.47363 * 185.00128 * 4 2 1 6 6 C 1.34773 * 120.00116 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46823 * 299.99744 * 8 6 5 10 10 C 1.53004 * 109.47240 * 59.99418 * 8 6 5 11 11 C 1.50703 * 109.47209 * 179.97438 * 8 6 5 12 12 C 1.39863 * 126.03939 * 300.14998 * 11 8 6 13 13 N 1.30837 * 108.19940 * 180.23470 * 12 11 8 14 14 N 1.40080 * 108.20847 * 359.78161 * 13 12 11 15 15 C 1.46501 * 126.03988 * 180.02562 * 14 13 12 16 16 C 1.34953 * 107.92287 * 359.97438 * 14 13 12 17 17 N 1.46899 * 109.46987 * 119.99184 * 2 1 3 18 18 C 1.46899 * 111.00168 * 274.99941 * 17 2 1 19 19 C 1.50700 * 109.47034 * 180.02562 * 18 17 2 20 20 O 1.21293 * 119.99930 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99993 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00040 * 179.97438 * 21 19 18 23 23 H 1.08006 * 120.00024 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00012 * 179.97438 * 22 21 19 25 25 N 1.31409 * 120.00411 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 120.00074 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46915 * 59.99734 * 26 24 22 28 28 H 1.48497 * 109.47285 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47160 * 300.00165 * 26 24 22 30 30 H 1.09001 * 109.47104 * 300.00740 * 1 2 3 31 31 H 1.08999 * 109.46767 * 60.00357 * 1 2 3 32 32 H 1.09000 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46938 * 65.00029 * 4 2 1 34 34 H 1.08994 * 109.47364 * 305.00069 * 4 2 1 35 35 H 0.96998 * 119.99513 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.47351 * 300.00665 * 10 8 6 37 37 H 1.09004 * 109.46492 * 60.00121 * 10 8 6 38 38 H 1.08990 * 109.47399 * 179.97438 * 10 8 6 39 39 H 1.08001 * 125.90034 * 0.02562 * 12 11 8 40 40 H 1.08999 * 109.47001 * 269.97426 * 15 14 13 41 41 H 1.09001 * 109.47118 * 29.97853 * 15 14 13 42 42 H 1.08997 * 109.46734 * 149.97364 * 15 14 13 43 43 H 1.08002 * 126.12372 * 179.97438 * 16 14 13 44 44 H 1.00899 * 111.00073 * 151.04345 * 17 2 1 45 45 H 1.08993 * 109.47260 * 299.99774 * 18 17 2 46 46 H 1.08997 * 109.46831 * 60.00449 * 18 17 2 47 47 H 0.96991 * 119.99895 * 359.97438 * 21 19 18 48 48 H 0.96998 * 120.00541 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5001 -0.8266 -1.1904 6 6 4.1731 -1.4286 -2.1909 7 8 3.5700 -1.8837 -3.1396 8 6 5.6749 -1.5373 -2.1303 9 1 6.1099 -0.5388 -2.0838 10 6 6.0792 -2.3281 -0.8844 11 6 6.1773 -2.2477 -3.3607 12 6 5.8373 -3.5448 -3.7584 13 7 6.4741 -3.8116 -4.8698 14 7 7.2366 -2.6892 -5.2176 15 6 8.1002 -2.5649 -6.3945 16 6 7.0343 -1.7422 -4.2777 17 7 2.0196 -0.6923 1.1995 18 6 2.0824 0.2229 2.3469 19 6 2.5885 -0.5211 3.5558 20 8 2.8687 -1.6981 3.4701 21 7 2.7286 0.1211 4.7324 22 6 3.1885 -0.5558 5.8324 23 1 3.4380 -1.6039 5.7561 24 6 3.3335 0.1064 7.0452 25 7 3.0294 1.3814 7.1382 26 14 3.9607 -0.8158 8.5438 27 1 5.3169 -1.3518 8.2633 28 1 4.0248 0.1095 9.7035 29 1 3.0397 -1.9382 8.8557 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7516 -0.1585 -2.1369 34 1 1.6054 -1.7199 -1.2949 35 1 3.9824 -0.4622 -0.4318 36 1 5.7158 -1.8147 0.0057 37 1 5.6442 -3.3265 -0.9310 38 1 7.1654 -2.4072 -0.8408 39 1 5.1677 -4.2123 -3.2363 40 1 9.1057 -2.9033 -6.1446 41 1 7.7016 -3.1765 -7.2039 42 1 8.1357 -1.5223 -6.7105 43 1 7.4805 -0.7588 -4.2583 44 1 2.9172 -1.1204 1.0289 45 1 2.7588 1.0464 2.1182 46 1 1.0870 0.6166 2.5525 47 1 2.5042 1.0622 4.8010 48 1 3.1302 1.8436 7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491699962.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:12 Heat of formation + Delta-G solvation = -21.945697 kcal Electronic energy + Delta-G solvation = -28648.973776 eV Core-core repulsion = 24546.549678 eV Total energy + Delta-G solvation = -4102.424098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25398 -40.76295 -40.09510 -38.17087 -35.94327 -35.41207 -34.85245 -33.48396 -33.22308 -31.94728 -30.34477 -28.13236 -27.46236 -27.25603 -25.71361 -24.83532 -22.21419 -21.84195 -21.61301 -21.10828 -20.56375 -19.88105 -18.45679 -17.67180 -17.56448 -16.98512 -16.89530 -16.54686 -16.33165 -16.18954 -15.98967 -15.56383 -15.33630 -15.14998 -14.86684 -14.69180 -14.23911 -13.94898 -13.69144 -13.66180 -13.48999 -13.44711 -13.36626 -13.24778 -13.11352 -12.90005 -12.77196 -12.57177 -12.53360 -12.44442 -12.39364 -12.10876 -11.83757 -11.47033 -11.45430 -10.75577 -10.31577 -10.30189 -10.07402 -9.98036 -9.32818 -9.31499 -8.43723 -5.91855 0.97743 1.41678 1.44059 1.54255 1.70592 1.71432 1.76427 2.09109 2.30671 2.36229 2.91368 3.24051 3.52344 3.60681 3.73653 3.82066 4.02036 4.18977 4.22682 4.25250 4.30739 4.37913 4.43056 4.46334 4.46938 4.50408 4.64090 4.67881 4.70514 4.81517 4.85610 4.88129 4.95397 5.00458 5.08003 5.17845 5.34172 5.37200 5.44038 5.50603 5.66439 5.91915 6.12833 6.18891 6.41020 6.53168 6.63691 6.74834 7.16173 7.28876 7.60381 8.15800 8.73174 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.002133 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.068737 B =13124.048189 C =14548.296759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.518 3.482 7 O -0.573 6.573 8 C -0.020 4.020 9 H 0.132 0.868 10 C -0.138 4.138 11 C -0.236 4.236 12 C 0.062 3.938 13 N -0.343 5.343 14 N -0.382 5.382 15 C 0.094 3.906 16 C 0.070 3.930 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.437 3.563 20 O -0.622 6.622 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.275 1.275 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.406 0.594 36 H 0.067 0.933 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.167 0.833 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.215 0.785 44 H 0.344 0.656 45 H 0.074 0.926 46 H 0.103 0.897 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 3.749 -22.861 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.378 5.378 6 C 0.305 3.695 7 O -0.452 6.452 8 C -0.042 4.042 9 H 0.150 0.850 10 C -0.196 4.196 11 C -0.248 4.248 12 C -0.124 4.124 13 N -0.165 5.165 14 N -0.164 5.164 15 C -0.046 4.046 16 C -0.078 4.078 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.196 1.196 29 H -0.200 1.200 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.184 0.816 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.135 0.865 43 H 0.231 0.769 44 H 0.165 0.835 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.412 1.672 -24.339 25.497 hybrid contribution 0.628 0.972 1.741 2.090 sum 8.041 2.644 -22.598 24.131 Atomic orbital electron populations 1.21753 0.92931 1.02382 1.02555 1.21838 0.97361 0.96503 0.87311 0.91167 1.21490 0.79764 1.00948 0.97784 1.46027 1.07829 1.60010 1.23897 1.21087 0.90913 0.76256 0.81253 1.90685 1.71166 1.48577 1.34766 1.19522 0.89570 1.01834 0.93252 0.85019 1.21761 1.03054 0.99736 0.95027 1.19649 1.07513 0.96125 1.01513 1.23660 0.97980 0.97002 0.93733 1.77276 1.12218 1.09617 1.17425 1.48771 1.36132 1.10182 1.21300 1.22184 0.92849 1.05571 0.84003 1.22872 0.99063 0.96659 0.89157 1.60101 1.34922 1.32919 1.03701 1.21613 1.02545 0.93713 0.88915 1.20895 0.83176 0.87980 0.85445 1.90507 1.56592 1.18183 1.85602 1.41915 1.58295 1.12593 1.08169 1.19603 1.42032 0.95914 0.88614 0.90372 1.25985 0.97342 0.96603 1.01270 1.69654 1.48622 1.09600 1.28123 0.85034 0.78754 0.77806 0.77033 1.19606 1.19621 1.20002 0.92256 0.90156 0.92968 0.90014 0.92488 0.75707 0.91382 0.93511 0.90143 0.81553 0.89411 0.89711 0.86498 0.76881 0.83497 0.90784 0.87885 0.76944 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.41 71.98 0.68 -2.02 16 2 C 0.08 1.63 2.81 44.91 0.13 1.75 16 3 H 0.07 1.19 7.80 -2.39 -0.02 1.18 16 4 C 0.12 2.63 5.31 86.38 0.46 3.09 16 5 N -0.72 -14.60 4.88 -463.07 -2.26 -16.86 16 6 C 0.52 12.08 7.11 87.66 0.62 12.70 16 7 O -0.57 -18.14 15.37 -3.03 -0.05 -18.19 16 8 C -0.02 -0.34 3.09 -12.28 -0.04 -0.38 16 9 H 0.13 1.44 8.11 -2.39 -0.02 1.42 16 10 C -0.14 -2.44 8.98 71.98 0.65 -1.80 16 11 C -0.24 -4.93 4.37 -20.15 -0.09 -5.02 16 12 C 0.06 1.61 10.76 85.23 0.92 2.53 16 13 N -0.34 -9.15 12.58 -57.03 -0.72 -9.87 16 14 N -0.38 -7.13 4.01 -369.56 -1.48 -8.61 16 15 C 0.09 0.81 11.47 127.77 1.47 2.28 16 16 C 0.07 1.11 11.38 83.54 0.95 2.06 16 17 N -0.68 -19.44 5.93 -495.61 -2.94 -22.37 16 18 C 0.06 1.99 5.97 85.56 0.51 2.50 16 19 C 0.44 19.72 7.82 87.66 0.69 20.41 16 20 O -0.62 -33.22 15.78 -3.07 -0.05 -33.26 16 21 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 22 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -48.37 13.05 21.66 0.28 -48.09 16 26 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 30 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 6.95 6.79 -92.71 -0.63 6.32 16 36 H 0.07 1.17 7.57 -2.39 -0.02 1.15 16 37 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.34 10.18 6.41 -89.69 -0.58 9.60 16 45 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 46 H 0.10 2.92 7.44 -2.39 -0.02 2.91 16 47 H 0.40 18.44 7.90 -92.71 -0.73 17.71 16 48 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -79.12 403.66 0.47 -78.65 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.94 Total: 43.81 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 8.22 Total: 20.40 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -8.74 Total: -135.58 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -0.10 Total: -51.46 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -79.12 0.47 -78.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699962.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.699 kcal (2) G-P(sol) polarization free energy of solvation -79.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds