Wall clock time and date at job start Tue Mar 31 2020 20:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52992 * 109.47416 * 119.99938 * 2 1 3 5 5 N 1.46505 * 109.47363 * 175.00123 * 4 2 1 6 6 C 1.34773 * 120.00116 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46823 * 299.99744 * 8 6 5 10 10 C 1.53004 * 109.47240 * 59.99418 * 8 6 5 11 11 C 1.50703 * 109.47209 * 179.97438 * 8 6 5 12 12 C 1.39863 * 126.03939 * 300.14998 * 11 8 6 13 13 N 1.30837 * 108.19940 * 180.23470 * 12 11 8 14 14 N 1.40080 * 108.20847 * 359.78161 * 13 12 11 15 15 C 1.46501 * 126.03988 * 180.02562 * 14 13 12 16 16 C 1.34953 * 107.92287 * 359.97438 * 14 13 12 17 17 N 1.46898 * 109.47251 * 240.00351 * 2 1 3 18 18 C 1.46897 * 111.00271 * 84.99550 * 17 2 1 19 19 C 1.50697 * 109.47440 * 180.02562 * 18 17 2 20 20 O 1.21293 * 119.99921 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00157 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99862 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00090 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99906 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00164 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46805 * 60.00763 * 26 24 22 28 28 H 1.48500 * 109.46795 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47451 * 300.00381 * 26 24 22 30 30 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46606 * 299.99575 * 1 2 3 32 32 H 1.09001 * 109.47307 * 60.00034 * 1 2 3 33 33 H 1.09004 * 109.46938 * 55.00024 * 4 2 1 34 34 H 1.08994 * 109.47364 * 295.00064 * 4 2 1 35 35 H 0.96998 * 119.99513 * 359.97438 * 5 4 2 36 36 H 1.08990 * 109.47399 * 179.97438 * 10 8 6 37 37 H 1.08998 * 109.47351 * 300.00665 * 10 8 6 38 38 H 1.09004 * 109.46492 * 60.00121 * 10 8 6 39 39 H 1.08001 * 125.90034 * 0.02562 * 12 11 8 40 40 H 1.08999 * 109.47001 * 269.97426 * 15 14 13 41 41 H 1.09001 * 109.47118 * 29.97853 * 15 14 13 42 42 H 1.08997 * 109.46734 * 149.97364 * 15 14 13 43 43 H 1.08002 * 126.12372 * 179.97438 * 16 14 13 44 44 H 1.00893 * 111.00394 * 208.95318 * 17 2 1 45 45 H 1.08997 * 109.47263 * 300.00465 * 18 17 2 46 46 H 1.09003 * 109.47472 * 60.00099 * 18 17 2 47 47 H 0.96998 * 120.00574 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8263 1.1905 6 6 4.1732 -1.4290 2.1906 7 8 3.5701 -1.8841 3.1394 8 6 5.6751 -1.5366 2.1305 9 1 5.9638 -2.0990 1.2424 10 6 6.2847 -0.1347 2.0670 11 6 6.1775 -2.2471 3.3609 12 6 5.9982 -1.8289 4.6835 13 7 6.5785 -2.6992 5.4695 14 7 7.1418 -3.7028 4.6709 15 6 7.8844 -4.8709 5.1509 16 6 6.8787 -3.4042 3.3814 17 7 2.0197 -0.6924 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5873 -0.5216 -3.5560 20 8 2.8678 -1.6986 -3.4703 21 7 2.7282 0.1207 -4.7325 22 6 3.1880 -0.5564 -5.8324 23 1 3.4370 -1.6046 -5.7562 24 6 3.3327 0.1057 -7.0454 25 7 3.0293 1.3809 -7.1383 26 14 3.9600 -0.8167 -8.5439 27 1 3.0389 -1.9391 -8.8555 28 1 4.0225 0.1082 -9.7040 29 1 5.3162 -1.3525 -8.2636 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1583 2.1369 35 1 3.9824 -0.4627 0.4315 36 1 7.3710 -0.2125 2.0240 37 1 5.9214 0.3795 1.1773 38 1 5.9959 0.4275 2.9550 39 1 5.4745 -0.9393 5.0009 40 1 8.9446 -4.6261 5.2155 41 1 7.5164 -5.1555 6.1367 42 1 7.7446 -5.7003 4.4576 43 1 7.1787 -3.9824 2.5200 44 1 2.9173 -1.1204 -1.0288 45 1 1.0871 0.6164 -2.5525 46 1 2.7588 1.0463 -2.1183 47 1 2.5043 1.0620 -4.8011 48 1 3.1307 1.8432 -7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491699964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:16 Heat of formation + Delta-G solvation = 5.427422 kcal Electronic energy + Delta-G solvation = -28587.402581 eV Core-core repulsion = 24486.165470 eV Total energy + Delta-G solvation = -4101.237111 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48748 -39.80324 -38.43399 -36.98318 -34.62905 -34.12891 -33.71544 -32.73220 -31.32199 -30.80219 -29.63213 -26.89976 -26.70301 -26.16349 -24.27429 -23.82533 -21.39819 -21.08365 -20.63968 -19.81202 -19.29023 -17.96096 -17.49854 -16.76807 -16.32339 -15.97999 -15.62861 -15.57725 -15.36649 -14.82240 -14.57458 -14.47716 -14.16021 -13.99915 -13.83702 -13.46372 -13.19312 -13.09182 -12.88022 -12.75560 -12.66011 -12.54605 -12.31677 -11.93973 -11.90856 -11.75763 -11.70860 -11.63370 -11.42180 -11.07943 -10.85751 -10.67832 -10.46819 -10.24288 -9.81894 -9.53281 -9.53140 -9.13538 -8.56710 -8.50047 -8.14531 -7.99531 -6.44732 -3.85703 1.71090 2.33344 2.57711 2.64641 3.17631 3.20174 3.23857 3.28027 3.86631 4.03261 4.24821 4.26811 4.54245 4.62255 4.67889 4.79154 4.82804 4.94022 4.97925 5.05516 5.08553 5.16482 5.20652 5.22943 5.30064 5.46690 5.49659 5.55729 5.67827 5.68299 5.76703 5.77219 5.85394 5.94534 5.99035 6.00001 6.18987 6.27208 6.39363 6.48083 6.79736 7.14393 7.39188 7.52031 7.54070 7.56862 8.02693 8.18512 8.57720 9.14585 9.50714 10.01993 10.72766 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.002151 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.278838 B =13013.395629 C =14473.048091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.049 0.951 4 C 0.119 3.881 5 N -0.732 5.732 6 C 0.520 3.480 7 O -0.532 6.532 8 C -0.032 4.032 9 H 0.104 0.896 10 C -0.139 4.139 11 C -0.216 4.216 12 C 0.081 3.919 13 N -0.304 5.304 14 N -0.380 5.380 15 C 0.103 3.897 16 C 0.062 3.938 17 N -0.664 5.664 18 C 0.049 3.951 19 C 0.439 3.561 20 O -0.583 6.583 21 N -0.562 5.562 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.274 1.274 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.398 0.602 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.177 0.823 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.174 0.826 44 H 0.347 0.653 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -2.052 20.485 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.039 4.039 3 H 0.066 0.934 4 C -0.005 4.005 5 N -0.386 5.386 6 C 0.306 3.694 7 O -0.407 6.407 8 C -0.054 4.054 9 H 0.122 0.878 10 C -0.197 4.197 11 C -0.228 4.228 12 C -0.105 4.105 13 N -0.125 5.125 14 N -0.162 5.162 15 C -0.038 4.038 16 C -0.084 4.084 17 N -0.299 5.299 18 C -0.083 4.083 19 C 0.224 3.776 20 O -0.467 6.467 21 N -0.199 5.199 22 C -0.430 4.430 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.194 0.806 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.191 0.809 44 H 0.169 0.831 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.101 -3.765 22.173 23.303 hybrid contribution 0.891 1.091 -2.014 2.458 sum 6.993 -2.674 20.159 21.504 Atomic orbital electron populations 1.21737 0.93473 1.02937 1.01507 1.21806 0.97081 0.95918 0.89066 0.93357 1.21574 0.79512 1.01904 0.97467 1.46072 1.07967 1.60520 1.24003 1.20577 0.89759 0.77083 0.81999 1.90702 1.70163 1.46751 1.33127 1.19532 0.91117 0.97944 0.96842 0.87819 1.21764 1.01599 0.93922 1.02371 1.19411 1.09817 0.99030 0.94565 1.23575 0.97286 0.98635 0.91044 1.77350 1.16586 0.99689 1.18833 1.48375 1.43469 1.20156 1.04167 1.21824 0.95642 0.84328 1.02010 1.22282 1.00319 0.97475 0.88366 1.60110 1.34824 1.32276 1.02721 1.21753 1.01494 0.93788 0.91291 1.19796 0.85080 0.88213 0.84465 1.90530 1.55345 1.16094 1.84753 1.41859 1.57660 1.12419 1.07968 1.19647 1.40087 0.96411 0.86821 0.87975 1.25267 0.97627 0.95786 0.99240 1.69600 1.48510 1.08830 1.27305 0.85917 0.79412 0.78856 0.80033 1.19879 1.20981 1.19913 0.91549 0.92515 0.92019 0.90468 0.90926 0.76647 0.91258 0.91884 0.92035 0.80568 0.90870 0.89396 0.89526 0.80924 0.83142 0.89429 0.93847 0.77460 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.42 37.16 0.35 -1.14 16 2 C 0.07 0.81 2.81 -67.72 -0.19 0.62 16 3 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 4 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 5 N -0.73 -7.82 4.88 -60.30 -0.29 -8.11 16 6 C 0.52 6.22 7.11 -10.99 -0.08 6.14 16 7 O -0.53 -8.30 15.37 5.56 0.09 -8.22 16 8 C -0.03 -0.30 3.09 -92.92 -0.29 -0.59 16 9 H 0.10 0.85 8.11 -51.93 -0.42 0.43 16 10 C -0.14 -1.05 8.98 37.16 0.33 -0.72 16 11 C -0.22 -2.34 4.37 -105.06 -0.46 -2.80 16 12 C 0.08 0.97 10.76 -17.37 -0.19 0.79 16 13 N -0.30 -3.87 12.58 30.62 0.39 -3.49 16 14 N -0.38 -3.87 4.01 -68.16 -0.27 -4.14 16 15 C 0.10 0.59 11.47 59.85 0.69 1.28 16 16 C 0.06 0.59 11.38 -17.22 -0.20 0.40 16 17 N -0.66 -9.96 5.93 -108.00 -0.64 -10.60 16 18 C 0.05 0.81 5.96 -4.98 -0.03 0.78 16 19 C 0.44 9.95 7.82 -10.99 -0.09 9.87 16 20 O -0.58 -15.33 15.78 5.55 0.09 -15.24 16 21 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 22 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 23 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.77 6.79 -40.82 -0.28 3.50 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.42 7.57 -51.93 -0.39 0.03 16 38 H 0.06 0.47 8.02 -51.93 -0.42 0.06 16 39 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 44 H 0.35 5.32 6.41 -39.30 -0.25 5.06 16 45 H 0.09 1.35 7.44 -51.93 -0.39 0.97 16 46 H 0.04 0.62 8.06 -51.93 -0.42 0.21 16 47 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -35.43 403.66 -6.75 -42.17 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -7.42 Total: 14.93 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.40 Total: 8.12 kcal Atomic # 7 Polarization: -63.32 SS G_CDS: -0.16 Total: -63.48 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.43 -6.75 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.599 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds