Wall clock time and date at job start Tue Mar 31 2020 20:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46927 * 2 1 4 4 C 1.52992 * 109.47416 * 119.99938 * 2 1 3 5 5 N 1.46505 * 109.47363 * 175.00123 * 4 2 1 6 6 C 1.34773 * 120.00116 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00239 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00105 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.46823 * 299.99744 * 8 6 5 10 10 C 1.53004 * 109.47240 * 59.99418 * 8 6 5 11 11 C 1.50703 * 109.47209 * 179.97438 * 8 6 5 12 12 C 1.39863 * 126.03939 * 300.14998 * 11 8 6 13 13 N 1.30837 * 108.19940 * 180.23470 * 12 11 8 14 14 N 1.40080 * 108.20847 * 359.78161 * 13 12 11 15 15 C 1.46501 * 126.03988 * 180.02562 * 14 13 12 16 16 C 1.34953 * 107.92287 * 359.97438 * 14 13 12 17 17 N 1.46898 * 109.47251 * 240.00351 * 2 1 3 18 18 C 1.46897 * 111.00271 * 84.99550 * 17 2 1 19 19 C 1.50697 * 109.47440 * 180.02562 * 18 17 2 20 20 O 1.21293 * 119.99921 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00157 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99862 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00090 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99906 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00164 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99909 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.46805 * 60.00763 * 26 24 22 28 28 H 1.48500 * 109.46795 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47451 * 300.00381 * 26 24 22 30 30 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46606 * 299.99575 * 1 2 3 32 32 H 1.09001 * 109.47307 * 60.00034 * 1 2 3 33 33 H 1.09004 * 109.46938 * 55.00024 * 4 2 1 34 34 H 1.08994 * 109.47364 * 295.00064 * 4 2 1 35 35 H 0.96998 * 119.99513 * 359.97438 * 5 4 2 36 36 H 1.08990 * 109.47399 * 179.97438 * 10 8 6 37 37 H 1.08998 * 109.47351 * 300.00665 * 10 8 6 38 38 H 1.09004 * 109.46492 * 60.00121 * 10 8 6 39 39 H 1.08001 * 125.90034 * 0.02562 * 12 11 8 40 40 H 1.08999 * 109.47001 * 269.97426 * 15 14 13 41 41 H 1.09001 * 109.47118 * 29.97853 * 15 14 13 42 42 H 1.08997 * 109.46734 * 149.97364 * 15 14 13 43 43 H 1.08002 * 126.12372 * 179.97438 * 16 14 13 44 44 H 1.00893 * 111.00394 * 208.95318 * 17 2 1 45 45 H 1.08997 * 109.47263 * 300.00465 * 18 17 2 46 46 H 1.09003 * 109.47472 * 60.00099 * 18 17 2 47 47 H 0.96998 * 120.00574 * 359.97438 * 21 19 18 48 48 H 0.96999 * 120.00333 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5002 -0.8263 1.1905 6 6 4.1732 -1.4290 2.1906 7 8 3.5701 -1.8841 3.1394 8 6 5.6751 -1.5366 2.1305 9 1 5.9638 -2.0990 1.2424 10 6 6.2847 -0.1347 2.0670 11 6 6.1775 -2.2471 3.3609 12 6 5.9982 -1.8289 4.6835 13 7 6.5785 -2.6992 5.4695 14 7 7.1418 -3.7028 4.6709 15 6 7.8844 -4.8709 5.1509 16 6 6.8787 -3.4042 3.3814 17 7 2.0197 -0.6924 -1.1995 18 6 2.0824 0.2227 -2.3469 19 6 2.5873 -0.5216 -3.5560 20 8 2.8678 -1.6986 -3.4703 21 7 2.7282 0.1207 -4.7325 22 6 3.1880 -0.5564 -5.8324 23 1 3.4370 -1.6046 -5.7562 24 6 3.3327 0.1057 -7.0454 25 7 3.0293 1.3809 -7.1383 26 14 3.9600 -0.8167 -8.5439 27 1 3.0389 -1.9391 -8.8555 28 1 4.0225 0.1082 -9.7040 29 1 5.3162 -1.3525 -8.2636 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1583 2.1369 35 1 3.9824 -0.4627 0.4315 36 1 7.3710 -0.2125 2.0240 37 1 5.9214 0.3795 1.1773 38 1 5.9959 0.4275 2.9550 39 1 5.4745 -0.9393 5.0009 40 1 8.9446 -4.6261 5.2155 41 1 7.5164 -5.1555 6.1367 42 1 7.7446 -5.7003 4.4576 43 1 7.1787 -3.9824 2.5200 44 1 2.9173 -1.1204 -1.0288 45 1 1.0871 0.6164 -2.5525 46 1 2.7588 1.0463 -2.1183 47 1 2.5043 1.0620 -4.8011 48 1 3.1307 1.8432 -7.9850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491699964.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:15 Heat of formation + Delta-G solvation = -22.038538 kcal Electronic energy + Delta-G solvation = -28588.593595 eV Core-core repulsion = 24486.165470 eV Total energy + Delta-G solvation = -4102.428124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25748 -40.76283 -40.09867 -38.17356 -35.94409 -35.41038 -34.85286 -33.48167 -33.22388 -31.94868 -30.34951 -28.13141 -27.46922 -27.25592 -25.72259 -24.81975 -22.21228 -21.85738 -21.61188 -21.11396 -20.57500 -19.88025 -18.45274 -17.67807 -17.55585 -16.95359 -16.86267 -16.63287 -16.33978 -16.25898 -15.92645 -15.57507 -15.31350 -15.13226 -14.86190 -14.72668 -14.25009 -13.92800 -13.69824 -13.64198 -13.50783 -13.44949 -13.37908 -13.25827 -13.10006 -12.89990 -12.77778 -12.60016 -12.46942 -12.45230 -12.39441 -12.10825 -11.84244 -11.47045 -11.46297 -10.75853 -10.32207 -10.30539 -10.07396 -9.98286 -9.33288 -9.31929 -8.43762 -5.92012 0.96372 1.41792 1.44198 1.54465 1.68811 1.72258 1.77315 2.08829 2.30484 2.35413 2.91381 3.23965 3.52567 3.60373 3.73414 3.80909 4.01619 4.19507 4.22763 4.25939 4.30284 4.38368 4.43092 4.44886 4.46949 4.50314 4.64044 4.67737 4.69015 4.82366 4.85312 4.88330 4.95451 5.01334 5.08019 5.18739 5.34089 5.36747 5.43872 5.50495 5.67999 5.91655 6.12535 6.16021 6.40802 6.53081 6.63424 6.74467 7.15905 7.28729 7.60147 8.15361 8.73125 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.002151 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.278838 B =13013.395629 C =14473.048091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.079 3.921 3 H 0.070 0.930 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.518 3.482 7 O -0.573 6.573 8 C -0.025 4.025 9 H 0.119 0.881 10 C -0.134 4.134 11 C -0.235 4.235 12 C 0.066 3.934 13 N -0.341 5.341 14 N -0.382 5.382 15 C 0.094 3.906 16 C 0.063 3.937 17 N -0.681 5.681 18 C 0.064 3.936 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.406 0.594 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.176 0.824 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.112 0.888 43 H 0.206 0.794 44 H 0.344 0.656 45 H 0.103 0.897 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -1.564 19.992 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.030 4.030 3 H 0.088 0.912 4 C 0.000 4.000 5 N -0.377 5.377 6 C 0.306 3.694 7 O -0.452 6.452 8 C -0.048 4.048 9 H 0.137 0.863 10 C -0.192 4.192 11 C -0.247 4.247 12 C -0.120 4.120 13 N -0.163 5.163 14 N -0.164 5.164 15 C -0.046 4.046 16 C -0.084 4.084 17 N -0.316 5.316 18 C -0.068 4.068 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.100 0.900 35 H 0.243 0.757 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.193 0.807 40 H 0.107 0.893 41 H 0.105 0.895 42 H 0.130 0.870 43 H 0.223 0.777 44 H 0.165 0.835 45 H 0.121 0.879 46 H 0.092 0.908 47 H 0.231 0.769 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.812 -3.241 21.684 22.959 hybrid contribution 0.656 0.880 -1.791 2.100 sum 7.468 -2.361 19.893 21.379 Atomic orbital electron populations 1.21753 0.92929 1.02388 1.02554 1.21836 0.97358 0.96506 0.87316 0.91201 1.21488 0.79743 1.00932 0.97796 1.46023 1.07828 1.59963 1.23925 1.21058 0.90811 0.76186 0.81370 1.90684 1.71164 1.48600 1.34743 1.19552 0.89139 0.99159 0.96913 0.86270 1.21747 1.02009 0.92753 1.02653 1.19649 1.10633 0.99899 0.94481 1.23703 0.97543 0.98835 0.91890 1.77260 1.17937 1.00926 1.20205 1.48746 1.43037 1.20348 1.04306 1.22169 0.96056 0.83725 1.02660 1.22846 0.99280 0.97175 0.89077 1.60100 1.34892 1.32926 1.03692 1.21613 1.02552 0.93718 0.88916 1.20885 0.83179 0.87975 0.85440 1.90501 1.56626 1.18191 1.85612 1.41923 1.58267 1.12585 1.08204 1.19605 1.42051 0.95915 0.88584 0.90329 1.26005 0.97341 0.96613 1.01310 1.69659 1.48612 1.09610 1.28140 0.85023 0.78772 0.77793 0.76973 1.19970 1.19676 1.19541 0.92944 0.90171 0.92258 0.92486 0.90001 0.75704 0.90407 0.90785 0.92507 0.80700 0.89283 0.89532 0.86968 0.77689 0.83506 0.87906 0.90792 0.76945 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.42 71.98 0.68 -2.01 16 2 C 0.08 1.62 2.81 44.91 0.13 1.75 16 3 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 4 C 0.12 2.63 5.31 86.38 0.46 3.09 16 5 N -0.72 -14.54 4.88 -463.07 -2.26 -16.80 16 6 C 0.52 12.09 7.11 87.66 0.62 12.71 16 7 O -0.57 -18.08 15.37 -3.03 -0.05 -18.13 16 8 C -0.03 -0.45 3.09 -12.28 -0.04 -0.48 16 9 H 0.12 1.72 8.11 -2.39 -0.02 1.70 16 10 C -0.13 -1.83 8.98 71.98 0.65 -1.18 16 11 C -0.23 -4.94 4.37 -20.15 -0.09 -5.03 16 12 C 0.07 1.61 10.76 85.23 0.92 2.53 16 13 N -0.34 -8.85 12.58 -57.03 -0.72 -9.56 16 14 N -0.38 -7.46 4.01 -369.56 -1.48 -8.95 16 15 C 0.09 0.93 11.47 127.77 1.47 2.40 16 16 C 0.06 1.13 11.38 83.54 0.95 2.08 16 17 N -0.68 -19.31 5.93 -495.60 -2.94 -22.24 16 18 C 0.06 1.98 5.96 85.56 0.51 2.49 16 19 C 0.44 19.64 7.82 87.66 0.69 20.33 16 20 O -0.62 -33.03 15.78 -3.07 -0.05 -33.07 16 21 N -0.57 -28.07 5.29 -306.98 -1.62 -29.69 16 22 C -0.33 -18.27 9.68 84.04 0.81 -17.45 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -48.28 13.05 21.66 0.28 -48.00 16 26 Si 0.99 41.87 29.55 68.60 2.03 43.90 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 33 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.41 6.92 6.79 -92.71 -0.63 6.29 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.84 7.57 -2.39 -0.02 0.82 16 38 H 0.06 0.83 8.02 -2.39 -0.02 0.81 16 39 H 0.18 4.01 8.06 -2.91 -0.02 3.99 16 40 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.21 2.05 8.06 -2.91 -0.02 2.03 16 44 H 0.34 10.09 6.41 -89.70 -0.58 9.51 16 45 H 0.10 2.91 7.44 -2.39 -0.02 2.89 16 46 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 47 H 0.40 18.40 7.90 -92.71 -0.73 17.67 16 48 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 Total: -1.00 -77.90 403.66 0.47 -77.43 By element: Atomic # 1 Polarization: 45.05 SS G_CDS: -0.94 Total: 44.12 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 8.22 Total: 21.01 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -8.74 Total: -135.25 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.10 Total: -51.20 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -77.90 0.47 -77.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699964.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.389 kcal (2) G-P(sol) polarization free energy of solvation -77.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds