Wall clock time and date at job start Tue Mar 31 2020 20:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 119.99705 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00064 * 4 2 1 6 6 N 1.34777 * 120.00137 * 299.99848 * 4 2 1 7 7 C 1.46506 * 119.99873 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46684 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47756 * 294.99812 * 8 7 6 10 10 C 1.53009 * 109.46984 * 175.00142 * 8 7 6 11 11 N 1.46899 * 109.47168 * 55.00784 * 8 7 6 12 12 C 1.46904 * 110.99709 * 204.99797 * 11 8 7 13 13 C 1.50700 * 109.47069 * 179.97438 * 12 11 8 14 14 O 1.21293 * 120.00189 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00004 * 179.97438 * 15 13 12 17 17 H 1.08006 * 120.00055 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99962 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46929 * 90.00284 * 20 18 16 22 22 H 1.48504 * 109.47240 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47299 * 330.00155 * 20 18 16 24 24 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 25 25 C 1.39866 * 126.04047 * 300.02758 * 24 2 1 26 26 N 1.30835 * 108.20339 * 179.97438 * 25 24 2 27 27 N 1.40081 * 108.20686 * 0.02562 * 26 25 24 28 28 C 1.46500 * 126.04168 * 180.02562 * 27 26 25 29 29 C 1.34956 * 107.92585 * 359.75272 * 27 26 25 30 30 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47624 * 300.00469 * 1 2 3 33 33 H 0.96995 * 120.00018 * 0.27749 * 6 4 2 34 34 H 1.09000 * 109.47212 * 300.00355 * 7 6 4 35 35 H 1.09001 * 109.46577 * 60.00430 * 7 6 4 36 36 H 1.08999 * 109.47112 * 300.00392 * 10 8 7 37 37 H 1.09001 * 109.46642 * 60.00139 * 10 8 7 38 38 H 1.08998 * 109.46901 * 180.02562 * 10 8 7 39 39 H 1.00897 * 110.99732 * 328.94211 * 11 8 7 40 40 H 1.08996 * 109.47209 * 299.99709 * 12 11 8 41 41 H 1.09004 * 109.47529 * 59.99830 * 12 11 8 42 42 H 0.96996 * 119.99977 * 0.02562 * 15 13 12 43 43 H 0.97000 * 120.00301 * 179.97438 * 19 18 16 44 44 H 1.08000 * 125.89806 * 359.97438 * 25 24 2 45 45 H 1.08998 * 109.47319 * 89.96602 * 28 27 26 46 46 H 1.09003 * 109.47417 * 209.97337 * 28 27 26 47 47 H 1.09001 * 109.47016 * 329.97130 * 28 27 26 48 48 H 1.07991 * 126.12914 * 180.24633 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1945 -0.9408 3.6508 8 6 1.6841 -0.2197 4.8999 9 1 2.1187 0.7788 4.9463 10 6 2.0884 -1.0102 6.1461 11 7 0.2201 -0.1143 4.8406 12 6 -0.2587 1.0218 5.6395 13 6 -1.7613 1.0981 5.5542 14 8 -2.3733 0.2857 4.8933 15 7 -2.4253 2.0684 6.2131 16 6 -3.7923 2.1381 6.1350 17 1 -4.3371 1.4152 5.5458 18 6 -4.4768 3.1387 6.8138 19 7 -3.8139 4.0186 7.5302 20 14 -6.3394 3.2333 6.7080 21 1 -6.9389 2.4257 7.8007 22 1 -6.7718 4.6475 6.8434 23 1 -6.7884 2.7018 5.3962 24 6 2.0323 -0.7104 -1.2304 25 6 1.7731 -2.0407 -1.5761 26 7 2.3769 -2.2938 -2.7088 27 7 3.0410 -1.1310 -3.1201 28 6 3.8399 -0.9800 -4.3388 29 6 2.8097 -0.1726 -2.1986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1457 0.5365 2.5435 34 1 1.8308 -1.9683 3.6506 35 1 3.2845 -0.9411 3.6509 36 1 1.6537 -2.0087 6.0998 37 1 3.1747 -1.0884 6.1901 38 1 1.7243 -0.4967 7.0360 39 1 -0.0990 -0.0449 3.8860 40 1 0.0401 0.8866 6.6790 41 1 0.1741 1.9450 5.2542 42 1 -1.9360 2.7178 6.7419 43 1 -4.2917 4.7174 8.0038 44 1 1.1773 -2.7385 -1.0063 45 1 3.1989 -0.6455 -5.1544 46 1 4.6260 -0.2441 -4.1691 47 1 4.2895 -1.9381 -4.5996 48 1 3.1805 0.8413 -2.2276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491699967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:18 Heat of formation + Delta-G solvation = 5.648427 kcal Electronic energy + Delta-G solvation = -28648.190724 eV Core-core repulsion = 24546.963196 eV Total energy + Delta-G solvation = -4101.227527 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48477 -39.80300 -38.42847 -36.97937 -34.61249 -34.12530 -33.71248 -32.72752 -31.31628 -30.80003 -29.61579 -26.89959 -26.68974 -26.13970 -24.24198 -23.82647 -21.39307 -21.08590 -20.64114 -19.79151 -19.29060 -17.96047 -17.50005 -16.75923 -16.34381 -16.03353 -15.67009 -15.48072 -15.18655 -15.00274 -14.53638 -14.49153 -14.11315 -13.94872 -13.87265 -13.41424 -13.21137 -13.09176 -12.87925 -12.74181 -12.63562 -12.54116 -12.27460 -11.91104 -11.84832 -11.73720 -11.69983 -11.63049 -11.42019 -11.09319 -10.85467 -10.66359 -10.41294 -10.24081 -9.81197 -9.53423 -9.53008 -9.13667 -8.56450 -8.49462 -8.14190 -7.98880 -6.44284 -3.85121 1.70385 2.32880 2.60420 2.62535 3.16218 3.21111 3.25263 3.30812 3.87149 4.03441 4.23909 4.27372 4.54706 4.60284 4.68438 4.78436 4.81634 4.97379 4.99018 5.03858 5.06626 5.18019 5.22735 5.23950 5.30044 5.54212 5.55099 5.58006 5.67791 5.73213 5.77271 5.77857 5.91460 5.94752 5.99340 6.09380 6.19266 6.27386 6.39378 6.49585 6.79257 7.14482 7.39044 7.52906 7.54898 7.57238 8.03558 8.18401 8.58280 9.15355 9.51355 10.02568 10.73312 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002133 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.546535 B =13123.311798 C =14547.006164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 H 0.099 0.901 4 C 0.520 3.480 5 O -0.532 6.532 6 N -0.732 5.732 7 C 0.119 3.881 8 C 0.071 3.929 9 H 0.048 0.952 10 C -0.138 4.138 11 N -0.664 5.664 12 C 0.049 3.951 13 C 0.439 3.561 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.269 1.269 24 C -0.215 4.215 25 C 0.083 3.917 26 N -0.302 5.302 27 N -0.381 5.381 28 C 0.104 3.896 29 C 0.058 3.942 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.398 0.602 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.347 0.653 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.179 0.821 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.110 -2.792 -15.772 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.052 4.052 3 H 0.118 0.882 4 C 0.305 3.695 5 O -0.407 6.407 6 N -0.386 5.386 7 C -0.005 4.005 8 C -0.039 4.039 9 H 0.066 0.934 10 C -0.197 4.197 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.200 5.200 16 C -0.429 4.429 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.194 1.194 24 C -0.227 4.227 25 C -0.104 4.104 26 N -0.123 5.123 27 N -0.163 5.163 28 C -0.038 4.038 29 C -0.088 4.088 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.106 0.894 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.196 0.804 45 H 0.091 0.909 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 17.376 -5.222 -16.744 24.689 hybrid contribution -0.747 2.415 0.600 2.598 sum 16.629 -2.807 -16.143 23.346 Atomic orbital electron populations 1.21794 0.91838 1.03346 1.02980 1.19522 0.97357 0.99092 0.89246 0.88249 1.20594 0.79939 0.84646 0.84275 1.90703 1.37417 1.25950 1.86679 1.46076 1.54077 1.32519 1.05907 1.21577 0.99002 0.97283 0.82601 1.21809 0.88803 0.98295 0.94976 0.93406 1.21738 1.00096 1.01177 0.96642 1.60121 1.07711 1.44497 1.17554 1.21758 0.95377 0.91657 0.99556 1.19796 0.88256 0.84361 0.85129 1.90534 1.68967 1.42142 1.44967 1.41864 1.07552 1.26777 1.43760 1.19701 0.81612 1.12907 1.28650 0.87898 1.25262 1.00653 0.95688 0.96338 1.69608 1.36608 1.16531 1.31525 0.85861 0.82234 0.77280 0.78937 1.20387 1.20954 1.19409 1.19432 1.08707 0.95512 0.99012 1.23633 0.98096 0.95672 0.92986 1.77373 1.13681 1.05725 1.15544 1.48379 1.40433 1.08291 1.19161 1.21810 0.94320 1.04015 0.83620 1.22219 1.00000 0.95600 0.90962 0.91295 0.91694 0.91522 0.76653 0.90393 0.90992 0.91515 0.92541 0.92022 0.83121 0.89426 0.93881 0.77481 0.91868 0.80396 0.90895 0.89645 0.89385 0.81103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.98 37.16 0.33 -0.96 16 2 C -0.03 -0.28 3.09 -92.93 -0.29 -0.57 16 3 H 0.10 0.71 8.11 -51.93 -0.42 0.29 16 4 C 0.52 6.21 7.11 -10.99 -0.08 6.13 16 5 O -0.53 -8.30 15.37 5.55 0.09 -8.21 16 6 N -0.73 -7.81 4.89 -60.29 -0.29 -8.11 16 7 C 0.12 1.33 5.31 -4.04 -0.02 1.31 16 8 C 0.07 0.81 2.81 -67.71 -0.19 0.62 16 9 H 0.05 0.50 7.80 -51.93 -0.40 0.10 16 10 C -0.14 -1.48 9.42 37.16 0.35 -1.13 16 11 N -0.66 -9.92 5.93 -107.99 -0.64 -10.56 16 12 C 0.05 0.81 5.97 -4.97 -0.03 0.78 16 13 C 0.44 9.94 7.82 -10.99 -0.09 9.85 16 14 O -0.58 -15.27 15.78 5.55 0.09 -15.19 16 15 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 16 C -0.30 -8.16 9.68 -14.94 -0.14 -8.30 16 17 H 0.10 2.95 7.16 -52.48 -0.38 2.58 16 18 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 20 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C -0.21 -2.32 4.36 -105.05 -0.46 -2.78 16 25 C 0.08 1.03 10.77 -17.37 -0.19 0.85 16 26 N -0.30 -3.93 12.58 30.62 0.39 -3.55 16 27 N -0.38 -3.80 4.01 -68.16 -0.27 -4.08 16 28 C 0.10 0.56 11.47 59.85 0.69 1.24 16 29 C 0.06 0.53 11.38 -17.22 -0.20 0.34 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 32 H 0.07 0.60 7.56 -51.93 -0.39 0.21 16 33 H 0.40 3.77 6.77 -40.82 -0.28 3.49 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.69 7.45 -51.93 -0.39 0.30 16 39 H 0.35 5.28 6.41 -39.29 -0.25 5.03 16 40 H 0.09 1.35 7.43 -51.93 -0.39 0.97 16 41 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 42 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 43 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 47 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 403.65 15.07 6.08 6.08 Total: -1.00 -35.44 403.65 -6.74 -42.18 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.42 Total: 15.03 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.40 Total: 7.86 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.16 Total: -63.45 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: 0.17 Total: -23.40 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.44 -6.74 -42.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.832 kcal (2) G-P(sol) polarization free energy of solvation -35.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds