Wall clock time and date at job start Tue Mar 31 2020 20:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50696 * 109.46910 * 119.99705 * 2 1 3 5 5 O 1.21284 * 120.00109 * 120.00064 * 4 2 1 6 6 N 1.34777 * 120.00137 * 299.99848 * 4 2 1 7 7 C 1.46506 * 119.99873 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.46684 * 180.02562 * 7 6 4 9 9 H 1.08997 * 109.47756 * 294.99812 * 8 7 6 10 10 C 1.53009 * 109.46984 * 175.00142 * 8 7 6 11 11 N 1.46899 * 109.47168 * 55.00784 * 8 7 6 12 12 C 1.46904 * 110.99709 * 204.99797 * 11 8 7 13 13 C 1.50700 * 109.47069 * 179.97438 * 12 11 8 14 14 O 1.21293 * 120.00189 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00119 * 179.97438 * 13 12 11 16 16 C 1.37096 * 120.00004 * 179.97438 * 15 13 12 17 17 H 1.08006 * 120.00055 * 0.02562 * 16 15 13 18 18 C 1.38946 * 119.99962 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00050 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.46929 * 90.00284 * 20 18 16 22 22 H 1.48504 * 109.47240 * 209.99958 * 20 18 16 23 23 H 1.48494 * 109.47299 * 330.00155 * 20 18 16 24 24 C 1.50699 * 109.47265 * 239.99748 * 2 1 3 25 25 C 1.39866 * 126.04047 * 300.02758 * 24 2 1 26 26 N 1.30835 * 108.20339 * 179.97438 * 25 24 2 27 27 N 1.40081 * 108.20686 * 0.02562 * 26 25 24 28 28 C 1.46500 * 126.04168 * 180.02562 * 27 26 25 29 29 C 1.34956 * 107.92585 * 359.75272 * 27 26 25 30 30 H 1.09002 * 109.47045 * 60.00093 * 1 2 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47624 * 300.00469 * 1 2 3 33 33 H 0.96995 * 120.00018 * 0.27749 * 6 4 2 34 34 H 1.09000 * 109.47212 * 300.00355 * 7 6 4 35 35 H 1.09001 * 109.46577 * 60.00430 * 7 6 4 36 36 H 1.08999 * 109.47112 * 300.00392 * 10 8 7 37 37 H 1.09001 * 109.46642 * 60.00139 * 10 8 7 38 38 H 1.08998 * 109.46901 * 180.02562 * 10 8 7 39 39 H 1.00897 * 110.99732 * 328.94211 * 11 8 7 40 40 H 1.08996 * 109.47209 * 299.99709 * 12 11 8 41 41 H 1.09004 * 109.47529 * 59.99830 * 12 11 8 42 42 H 0.96996 * 119.99977 * 0.02562 * 15 13 12 43 43 H 0.97000 * 120.00301 * 179.97438 * 19 18 16 44 44 H 1.08000 * 125.89806 * 359.97438 * 25 24 2 45 45 H 1.08998 * 109.47319 * 89.96602 * 28 27 26 46 46 H 1.09003 * 109.47417 * 209.97337 * 28 27 26 47 47 H 1.09001 * 109.47016 * 329.97130 * 28 27 26 48 48 H 1.07991 * 126.12914 * 180.24633 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 8 2.7295 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1945 -0.9408 3.6508 8 6 1.6841 -0.2197 4.8999 9 1 2.1187 0.7788 4.9463 10 6 2.0884 -1.0102 6.1461 11 7 0.2201 -0.1143 4.8406 12 6 -0.2587 1.0218 5.6395 13 6 -1.7613 1.0981 5.5542 14 8 -2.3733 0.2857 4.8933 15 7 -2.4253 2.0684 6.2131 16 6 -3.7923 2.1381 6.1350 17 1 -4.3371 1.4152 5.5458 18 6 -4.4768 3.1387 6.8138 19 7 -3.8139 4.0186 7.5302 20 14 -6.3394 3.2333 6.7080 21 1 -6.9389 2.4257 7.8007 22 1 -6.7718 4.6475 6.8434 23 1 -6.7884 2.7018 5.3962 24 6 2.0323 -0.7104 -1.2304 25 6 1.7731 -2.0407 -1.5761 26 7 2.3769 -2.2938 -2.7088 27 7 3.0410 -1.1310 -3.1201 28 6 3.8399 -0.9800 -4.3388 29 6 2.8097 -0.1726 -2.1986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.1457 0.5365 2.5435 34 1 1.8308 -1.9683 3.6506 35 1 3.2845 -0.9411 3.6509 36 1 1.6537 -2.0087 6.0998 37 1 3.1747 -1.0884 6.1901 38 1 1.7243 -0.4967 7.0360 39 1 -0.0990 -0.0449 3.8860 40 1 0.0401 0.8866 6.6790 41 1 0.1741 1.9450 5.2542 42 1 -1.9360 2.7178 6.7419 43 1 -4.2917 4.7174 8.0038 44 1 1.1773 -2.7385 -1.0063 45 1 3.1989 -0.6455 -5.1544 46 1 4.6260 -0.2441 -4.1691 47 1 4.2895 -1.9381 -4.5996 48 1 3.1805 0.8413 -2.2276 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491699967.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:17 Heat of formation + Delta-G solvation = -22.042091 kcal Electronic energy + Delta-G solvation = -28649.391475 eV Core-core repulsion = 24546.963196 eV Total energy + Delta-G solvation = -4102.428278 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.25341 -40.76343 -40.09668 -38.17129 -35.94472 -35.41363 -34.85207 -33.48420 -33.22414 -31.94736 -30.34432 -28.13385 -27.46273 -27.25540 -25.71554 -24.83722 -22.21487 -21.84229 -21.61258 -21.10998 -20.56377 -19.88286 -18.45860 -17.67349 -17.56445 -16.98712 -16.89672 -16.54717 -16.33296 -16.18981 -15.98606 -15.56281 -15.33814 -15.15180 -14.86422 -14.69398 -14.24118 -13.94990 -13.69308 -13.66263 -13.49206 -13.45077 -13.36700 -13.24876 -13.11387 -12.90698 -12.77509 -12.57275 -12.53530 -12.44389 -12.37918 -12.10301 -11.83813 -11.47874 -11.45425 -10.75582 -10.31615 -10.30302 -10.07477 -9.98059 -9.32952 -9.31436 -8.44061 -5.92058 0.97719 1.39685 1.44027 1.56008 1.70493 1.71122 1.76718 2.08918 2.30531 2.36211 2.91238 3.23834 3.52234 3.60638 3.73596 3.82005 4.02070 4.18968 4.22651 4.25333 4.30693 4.37924 4.42970 4.46312 4.46876 4.50313 4.64037 4.67902 4.70509 4.81545 4.85506 4.88095 4.95365 5.00345 5.07978 5.17853 5.34135 5.37182 5.44168 5.50582 5.66442 5.91849 6.12778 6.18897 6.40832 6.53078 6.63508 6.74828 7.16148 7.28818 7.60275 8.15680 8.73102 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014293 B = 0.002133 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.546535 B =13123.311798 C =14547.006164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.019 4.019 3 H 0.132 0.868 4 C 0.518 3.482 5 O -0.573 6.573 6 N -0.724 5.724 7 C 0.124 3.876 8 C 0.079 3.921 9 H 0.071 0.929 10 C -0.138 4.138 11 N -0.681 5.681 12 C 0.064 3.936 13 C 0.438 3.562 14 O -0.622 6.622 15 N -0.573 5.573 16 C -0.331 4.331 17 H 0.078 0.922 18 C -0.012 4.012 19 N -0.919 5.919 20 Si 0.990 3.010 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.236 4.236 25 C 0.061 3.939 26 N -0.343 5.343 27 N -0.382 5.382 28 C 0.094 3.906 29 C 0.070 3.930 30 H 0.080 0.920 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.406 0.594 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.344 0.656 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.167 0.833 45 H 0.087 0.913 46 H 0.117 0.883 47 H 0.084 0.916 48 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.456 -0.550 -16.090 24.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.042 4.042 3 H 0.150 0.850 4 C 0.305 3.695 5 O -0.452 6.452 6 N -0.378 5.378 7 C 0.000 4.000 8 C -0.030 4.030 9 H 0.088 0.912 10 C -0.196 4.196 11 N -0.316 5.316 12 C -0.068 4.068 13 C 0.225 3.775 14 O -0.509 6.509 15 N -0.210 5.210 16 C -0.461 4.461 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.814 3.186 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.197 1.197 24 C -0.248 4.248 25 C -0.124 4.124 26 N -0.165 5.165 27 N -0.164 5.164 28 C -0.046 4.046 29 C -0.078 4.078 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.165 0.835 40 H 0.121 0.879 41 H 0.092 0.908 42 H 0.231 0.769 43 H 0.086 0.914 44 H 0.185 0.815 45 H 0.106 0.894 46 H 0.135 0.865 47 H 0.103 0.897 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 18.739 -2.961 -17.048 25.506 hybrid contribution -1.091 1.673 0.646 2.099 sum 17.648 -1.288 -16.402 24.127 Atomic orbital electron populations 1.21763 0.91882 1.02383 1.03567 1.19516 0.97098 1.00142 0.87416 0.85019 1.21088 0.79159 0.84106 0.85154 1.90686 1.39478 1.27783 1.87249 1.46030 1.53688 1.32495 1.05553 1.21492 0.99435 0.96263 0.82795 1.21841 0.86511 0.99494 0.95174 0.91162 1.21754 1.01608 1.00161 0.96096 1.60107 1.10148 1.44109 1.17268 1.21617 0.90453 0.93693 1.01031 1.20895 0.90870 0.82624 0.83089 1.90508 1.70749 1.43345 1.46275 1.41921 1.06889 1.27647 1.44540 1.19637 0.83191 1.13435 1.29800 0.90380 1.25985 1.04642 0.94988 0.95610 1.69662 1.38059 1.16707 1.31588 0.84972 0.77241 0.77769 0.78637 1.19959 1.19581 1.19745 1.19648 1.09937 0.95005 1.00203 1.23662 0.98628 0.96789 0.93314 1.77275 1.15127 1.07918 1.16203 1.48772 1.39851 1.07558 1.20205 1.22184 0.94959 1.04935 0.82532 1.22870 0.98363 0.96876 0.89646 0.90128 0.93501 0.91391 0.75711 0.92502 0.90001 0.92971 0.90156 0.92250 0.83509 0.87876 0.90776 0.76942 0.91370 0.81548 0.89420 0.86500 0.89702 0.76880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.98 71.98 0.65 -1.80 16 2 C -0.02 -0.34 3.09 -12.29 -0.04 -0.38 16 3 H 0.13 1.44 8.11 -2.39 -0.02 1.42 16 4 C 0.52 12.09 7.11 87.66 0.62 12.71 16 5 O -0.57 -18.16 15.37 -3.04 -0.05 -18.21 16 6 N -0.72 -14.61 4.89 -463.05 -2.26 -16.87 16 7 C 0.12 2.64 5.31 86.38 0.46 3.09 16 8 C 0.08 1.63 2.81 44.92 0.13 1.75 16 9 H 0.07 1.20 7.80 -2.39 -0.02 1.18 16 10 C -0.14 -2.69 9.42 71.99 0.68 -2.01 16 11 N -0.68 -19.43 5.93 -495.56 -2.94 -22.37 16 12 C 0.06 1.99 5.97 85.56 0.51 2.50 16 13 C 0.44 19.73 7.82 87.66 0.69 20.41 16 14 O -0.62 -33.22 15.78 -3.07 -0.05 -33.27 16 15 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 16 C -0.33 -18.31 9.68 84.04 0.81 -17.49 16 17 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 18 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 19 N -0.92 -48.37 13.05 21.66 0.28 -48.08 16 20 Si 0.99 42.18 29.55 68.60 2.03 44.21 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 C -0.24 -4.93 4.36 -20.14 -0.09 -5.02 16 25 C 0.06 1.61 10.77 85.24 0.92 2.53 16 26 N -0.34 -9.15 12.58 -57.03 -0.72 -9.87 16 27 N -0.38 -7.13 4.01 -369.56 -1.48 -8.61 16 28 C 0.09 0.81 11.47 127.77 1.47 2.28 16 29 C 0.07 1.11 11.38 83.54 0.95 2.06 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 0.98 8.02 -2.39 -0.02 0.96 16 32 H 0.07 1.17 7.56 -2.39 -0.02 1.15 16 33 H 0.41 6.96 6.77 -92.71 -0.63 6.33 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 39 H 0.34 10.17 6.41 -89.70 -0.57 9.60 16 40 H 0.10 2.92 7.43 -2.39 -0.02 2.91 16 41 H 0.07 1.87 8.06 -2.38 -0.02 1.86 16 42 H 0.40 18.43 7.90 -92.71 -0.73 17.70 16 43 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.17 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 48 H 0.21 1.34 8.06 -2.92 -0.02 1.32 16 Total: -1.00 -79.19 403.65 0.47 -78.72 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -0.94 Total: 43.69 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 8.22 Total: 20.44 kcal Atomic # 7 Polarization: -126.85 SS G_CDS: -8.74 Total: -135.59 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.10 Total: -51.48 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -79.19 0.47 -78.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491699967.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.681 kcal (2) G-P(sol) polarization free energy of solvation -79.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds