Wall clock time and date at job start Tue Mar 31 2020 20:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47181 * 2 1 4 4 C 1.34262 * 125.75640 * 125.26382 * 3 2 1 5 5 C 1.38038 * 107.42083 * 180.14407 * 4 3 2 6 6 C 1.47430 * 126.41792 * 179.87087 * 5 4 3 7 7 O 1.21601 * 119.99537 * 359.71990 * 6 5 4 8 8 N 1.34773 * 120.00000 * 179.71414 * 6 5 4 9 9 C 1.46496 * 119.99934 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47355 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.47392 * 54.99840 * 10 9 8 12 12 C 1.53003 * 109.46945 * 294.99481 * 10 9 8 13 13 C 1.53006 * 109.47452 * 174.99751 * 10 9 8 14 14 N 1.46898 * 109.47138 * 184.99841 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 120.00147 * 23 21 19 26 26 H 1.48497 * 109.47378 * 239.99941 * 23 21 19 27 27 C 1.41297 * 107.16830 * 359.61169 * 5 4 3 28 28 N 1.30445 * 108.02311 * 0.24291 * 27 5 4 29 29 H 1.09004 * 109.47293 * 300.00331 * 1 2 3 30 30 H 1.08999 * 109.46991 * 59.99865 * 1 2 3 31 31 H 1.08989 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46800 * 240.00112 * 2 1 3 33 33 H 1.08999 * 109.46991 * 120.00135 * 2 1 3 34 34 H 1.07997 * 126.28538 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00253 * 0.02562 * 8 6 5 36 36 H 1.08997 * 109.47613 * 59.99832 * 9 8 6 37 37 H 1.09003 * 109.47151 * 300.00236 * 9 8 6 38 38 H 1.08999 * 109.47096 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47132 * 299.99905 * 12 10 9 40 40 H 1.09000 * 109.46878 * 60.00403 * 12 10 9 41 41 H 1.08997 * 109.46770 * 64.99788 * 13 10 9 42 42 H 1.08995 * 109.47019 * 305.00001 * 13 10 9 43 43 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 44 44 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 45 45 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 46 46 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 48 48 H 1.08001 * 125.98586 * 180.20016 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8730 1.9112 0.8896 5 6 3.0708 3.2310 0.5370 6 6 3.9323 4.2035 1.2339 7 8 4.5500 3.8670 2.2259 8 7 4.0353 5.4652 0.7715 9 6 4.8918 6.4314 1.4637 10 6 4.8299 7.7780 0.7402 11 1 3.7915 8.0987 0.6576 12 6 5.4319 7.6332 -0.6590 13 6 5.6239 8.8193 1.5317 14 7 5.4661 10.1373 0.9025 15 6 6.2170 11.1644 1.6368 16 6 6.0321 12.4997 0.9631 17 8 5.3423 12.5871 -0.0307 18 7 6.6332 13.5966 1.4650 19 6 6.4646 14.8115 0.8523 20 1 5.8504 14.8894 -0.0325 21 6 7.0839 15.9425 1.3699 22 7 7.8309 15.8478 2.4470 23 14 6.8547 17.5977 0.5348 24 1 5.9737 17.4367 -0.6497 25 1 6.2323 18.5511 1.4882 26 1 8.1754 18.1212 0.1026 27 6 2.2978 3.4738 -0.6206 28 7 1.6772 2.3691 -0.9305 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0275 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3215 1.3994 1.7282 35 1 3.5424 5.7336 -0.0196 36 1 5.9194 6.0680 1.4685 37 1 4.5452 6.5544 2.4898 38 1 5.3882 8.5927 -1.1743 39 1 6.4703 7.3126 -0.5764 40 1 4.8662 6.8915 -1.2229 41 1 6.6784 8.5438 1.5385 42 1 5.2519 8.8585 2.5554 43 1 4.4915 10.3870 0.8257 44 1 5.8495 11.2201 2.6616 45 1 7.2756 10.9050 1.6441 46 1 7.1846 13.5267 2.2599 47 1 8.2635 16.6373 2.8082 48 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495632478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:42 Heat of formation + Delta-G solvation = -7.134549 kcal Electronic energy + Delta-G solvation = -27324.529865 eV Core-core repulsion = 23222.748026 eV Total energy + Delta-G solvation = -4101.781839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79661 -39.51160 -38.33334 -37.10688 -35.08136 -34.80217 -33.83414 -32.31823 -31.17766 -31.01265 -30.07769 -27.37773 -26.77380 -24.99125 -24.36096 -23.40799 -22.48882 -21.15316 -20.67952 -20.12836 -19.17505 -18.28314 -17.83733 -16.46958 -16.35394 -16.16414 -15.83609 -15.70762 -15.29168 -14.98155 -14.67806 -14.64340 -14.35677 -14.12689 -13.97456 -13.65588 -13.40296 -13.25963 -13.13339 -12.98390 -12.71506 -12.54300 -12.35367 -12.09477 -11.88923 -11.65219 -11.50098 -11.40619 -11.12976 -11.00130 -10.96695 -10.82797 -10.33179 -10.21062 -10.07525 -10.06189 -9.50386 -9.33721 -9.00133 -8.43930 -8.02703 -7.93863 -6.40234 -3.80979 1.14369 1.79239 1.83748 3.04226 3.17550 3.23540 3.28062 3.35350 3.86015 3.93092 4.11784 4.26835 4.30660 4.33955 4.40331 4.55274 4.71085 4.76280 4.86794 4.89919 4.99341 5.01377 5.17177 5.19742 5.27489 5.31408 5.39372 5.49535 5.52498 5.66543 5.72224 5.79901 5.91023 5.93966 5.97347 6.01445 6.14972 6.29202 6.30709 6.34580 6.44245 7.07879 7.23085 7.35336 7.56905 7.68282 8.08307 8.08945 8.63057 9.19644 9.56360 10.07719 10.77615 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.001371 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.771251 B =20414.342068 C =20866.585724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.294 4.294 6 C 0.594 3.406 7 O -0.553 6.553 8 N -0.723 5.723 9 C 0.127 3.873 10 C -0.100 4.100 11 H 0.077 0.923 12 C -0.140 4.140 13 C 0.066 3.934 14 N -0.666 5.666 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.081 3.919 28 N -0.294 5.294 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.029 0.971 43 H 0.348 0.652 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.719 -31.752 -1.514 33.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.309 4.309 6 C 0.382 3.618 7 O -0.432 6.432 8 N -0.374 5.374 9 C 0.003 3.997 10 C -0.119 4.119 11 H 0.095 0.905 12 C -0.198 4.198 13 C -0.064 4.064 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.107 4.107 28 N -0.114 5.114 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.047 0.953 43 H 0.168 0.832 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -11.001 -32.589 -2.658 34.498 hybrid contribution 0.142 1.473 1.201 1.906 sum -10.859 -31.116 -1.457 32.989 Atomic orbital electron populations 1.22061 0.93278 1.03221 1.03851 1.21855 0.96541 0.76771 1.04367 1.48677 1.34081 1.10700 1.20569 1.23002 0.91443 0.93605 0.94350 1.20265 1.11732 0.95415 1.03518 1.17209 0.80217 0.81251 0.83128 1.90776 1.47135 1.78867 1.26395 1.45745 1.48977 1.10677 1.31988 1.21381 0.94909 0.87546 0.95900 1.21344 1.00793 0.93207 0.96566 0.90497 1.21760 1.00225 1.02608 0.95166 1.21896 1.00483 0.89232 0.94824 1.60034 1.17088 1.00336 1.52364 1.21667 0.99684 0.91768 0.95079 1.19822 0.85159 0.85084 0.87263 1.90517 1.43017 1.85799 1.27437 1.41872 1.44168 1.06742 1.27323 1.19756 1.28653 0.83708 1.10723 0.87873 1.25259 0.96396 0.99934 0.96357 1.69624 1.32058 1.30907 1.21745 0.85807 0.78113 0.81292 0.79174 1.19212 1.20801 1.20751 1.24096 0.94095 0.97516 0.94976 1.77156 1.23804 0.97123 1.13309 0.91897 0.90871 0.90370 0.89198 0.88149 0.79537 0.76564 0.91157 0.91453 0.90450 0.92788 0.93668 0.90730 0.95268 0.83248 0.93881 0.89591 0.77459 0.91944 0.79335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.09 37.16 0.37 -0.18 16 2 C 0.13 0.42 7.21 -4.04 -0.03 0.39 16 3 N -0.36 -2.52 3.65 -60.81 -0.22 -2.75 16 4 C 0.13 0.96 11.25 -16.56 -0.19 0.78 16 5 C -0.29 -2.64 6.13 -105.07 -0.64 -3.28 16 6 C 0.59 6.44 7.81 -12.52 -0.10 6.35 16 7 O -0.55 -7.93 16.90 5.28 0.09 -7.84 16 8 N -0.72 -6.36 5.28 -61.39 -0.32 -6.68 16 9 C 0.13 1.21 5.06 -4.05 -0.02 1.19 16 10 C -0.10 -0.96 2.57 -90.62 -0.23 -1.19 16 11 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 12 C -0.14 -1.40 8.95 37.16 0.33 -1.07 16 13 C 0.07 0.76 5.07 -3.82 -0.02 0.75 16 14 N -0.67 -10.27 5.58 -115.05 -0.64 -10.91 16 15 C 0.05 0.88 6.17 -4.97 -0.03 0.85 16 16 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16 17 O -0.58 -15.74 15.78 5.55 0.09 -15.66 16 18 N -0.56 -14.32 5.29 -10.97 -0.06 -14.38 16 19 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 C 0.08 0.63 11.50 -16.98 -0.20 0.44 16 28 N -0.29 -2.60 12.33 30.86 0.38 -2.22 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.32 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.09 8.06 -51.93 -0.42 -0.33 16 34 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.40 2.61 6.61 -40.82 -0.27 2.34 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.96 7.75 -51.93 -0.40 0.55 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.04 0.37 7.18 -51.93 -0.37 -0.01 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 44 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 48 H 0.19 0.90 7.50 -52.49 -0.39 0.51 16 LS Contribution 408.20 15.07 6.15 6.15 Total: -1.00 -35.66 408.20 -7.43 -43.09 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.52 Total: 11.72 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.07 Total: 7.30 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: -0.14 Total: -60.83 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.66 -7.43 -43.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495632478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.958 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds