Wall clock time and date at job start Tue Mar 31 2020 20:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47181 * 2 1 4 4 C 1.34262 * 125.75640 * 125.26382 * 3 2 1 5 5 C 1.38038 * 107.42083 * 180.14407 * 4 3 2 6 6 C 1.47430 * 126.41792 * 179.87087 * 5 4 3 7 7 O 1.21601 * 119.99537 * 359.71990 * 6 5 4 8 8 N 1.34773 * 120.00000 * 179.71414 * 6 5 4 9 9 C 1.46496 * 119.99934 * 180.02562 * 8 6 5 10 10 C 1.52994 * 109.47355 * 180.02562 * 9 8 6 11 11 H 1.08993 * 109.47392 * 54.99840 * 10 9 8 12 12 C 1.53003 * 109.46945 * 294.99481 * 10 9 8 13 13 C 1.53006 * 109.47452 * 174.99751 * 10 9 8 14 14 N 1.46898 * 109.47138 * 184.99841 * 13 10 9 15 15 C 1.46906 * 110.99888 * 180.02562 * 14 13 10 16 16 C 1.50699 * 109.47140 * 179.97438 * 15 14 13 17 17 O 1.21289 * 119.99678 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99614 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99518 * 180.02562 * 18 16 15 20 20 H 1.07996 * 120.00466 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00085 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99807 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00303 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46809 * 120.00147 * 23 21 19 26 26 H 1.48497 * 109.47378 * 239.99941 * 23 21 19 27 27 C 1.41297 * 107.16830 * 359.61169 * 5 4 3 28 28 N 1.30445 * 108.02311 * 0.24291 * 27 5 4 29 29 H 1.09004 * 109.47293 * 300.00331 * 1 2 3 30 30 H 1.08999 * 109.46991 * 59.99865 * 1 2 3 31 31 H 1.08989 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46800 * 240.00112 * 2 1 3 33 33 H 1.08999 * 109.46991 * 120.00135 * 2 1 3 34 34 H 1.07997 * 126.28538 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00253 * 0.02562 * 8 6 5 36 36 H 1.08997 * 109.47613 * 59.99832 * 9 8 6 37 37 H 1.09003 * 109.47151 * 300.00236 * 9 8 6 38 38 H 1.08999 * 109.47096 * 180.02562 * 12 10 9 39 39 H 1.08996 * 109.47132 * 299.99905 * 12 10 9 40 40 H 1.09000 * 109.46878 * 60.00403 * 12 10 9 41 41 H 1.08997 * 109.46770 * 64.99788 * 13 10 9 42 42 H 1.08995 * 109.47019 * 305.00001 * 13 10 9 43 43 H 1.00901 * 111.00121 * 56.04666 * 14 13 10 44 44 H 1.09004 * 109.47040 * 299.99934 * 15 14 13 45 45 H 1.09000 * 109.47033 * 59.99886 * 15 14 13 46 46 H 0.96996 * 120.00269 * 359.97438 * 18 16 15 47 47 H 0.97002 * 120.00022 * 179.97438 * 22 21 19 48 48 H 1.08001 * 125.98586 * 180.20016 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8730 1.9112 0.8896 5 6 3.0708 3.2310 0.5370 6 6 3.9323 4.2035 1.2339 7 8 4.5500 3.8670 2.2259 8 7 4.0353 5.4652 0.7715 9 6 4.8918 6.4314 1.4637 10 6 4.8299 7.7780 0.7402 11 1 3.7915 8.0987 0.6576 12 6 5.4319 7.6332 -0.6590 13 6 5.6239 8.8193 1.5317 14 7 5.4661 10.1373 0.9025 15 6 6.2170 11.1644 1.6368 16 6 6.0321 12.4997 0.9631 17 8 5.3423 12.5871 -0.0307 18 7 6.6332 13.5966 1.4650 19 6 6.4646 14.8115 0.8523 20 1 5.8504 14.8894 -0.0325 21 6 7.0839 15.9425 1.3699 22 7 7.8309 15.8478 2.4470 23 14 6.8547 17.5977 0.5348 24 1 5.9737 17.4367 -0.6497 25 1 6.2323 18.5511 1.4882 26 1 8.1754 18.1212 0.1026 27 6 2.2978 3.4738 -0.6206 28 7 1.6772 2.3691 -0.9305 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0275 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3215 1.3994 1.7282 35 1 3.5424 5.7336 -0.0196 36 1 5.9194 6.0680 1.4685 37 1 4.5452 6.5544 2.4898 38 1 5.3882 8.5927 -1.1743 39 1 6.4703 7.3126 -0.5764 40 1 4.8662 6.8915 -1.2229 41 1 6.6784 8.5438 1.5385 42 1 5.2519 8.8585 2.5554 43 1 4.4915 10.3870 0.8257 44 1 5.8495 11.2201 2.6616 45 1 7.2756 10.9050 1.6441 46 1 7.1846 13.5267 2.2599 47 1 8.2635 16.6373 2.8082 48 1 2.2318 4.4102 -1.1547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495632478.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:41 Heat of formation + Delta-G solvation = -34.590142 kcal Electronic energy + Delta-G solvation = -27325.720429 eV Core-core repulsion = 23222.748026 eV Total energy + Delta-G solvation = -4102.972403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36392 -40.35596 -40.09259 -38.17208 -36.14983 -35.63965 -35.40540 -33.41438 -33.11062 -31.55459 -30.63193 -28.78499 -27.58722 -26.54648 -25.01271 -24.42253 -23.32181 -21.73582 -21.48577 -21.08709 -20.72088 -19.87533 -18.88332 -17.78929 -17.09692 -16.96620 -16.87909 -16.65490 -16.49366 -16.16057 -15.95133 -15.60112 -15.30230 -15.21919 -15.15902 -14.71970 -14.51085 -14.29487 -13.92451 -13.76750 -13.52822 -13.40417 -13.33152 -13.12969 -12.98659 -12.97034 -12.82505 -12.46699 -12.39058 -12.10577 -11.97858 -11.96240 -11.83189 -11.66287 -11.49602 -10.91880 -10.59859 -10.31896 -10.12904 -9.99675 -9.62059 -9.26024 -8.45399 -5.94013 0.54622 1.17469 1.37753 1.40270 1.43009 1.57218 2.07429 2.27101 2.33587 2.49248 2.99414 3.22269 3.47003 3.56582 3.79143 3.92176 3.96673 4.03620 4.07641 4.11793 4.15902 4.35140 4.35914 4.41963 4.51172 4.55708 4.61159 4.68495 4.70147 4.79472 4.85127 4.88368 4.89804 5.02933 5.13912 5.20866 5.33050 5.42608 5.42739 5.52373 5.58879 5.88730 5.91354 6.13032 6.45656 6.50463 6.61847 6.66567 7.14342 7.32135 7.58367 8.13506 8.72282 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.001371 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.771251 B =20414.342068 C =20866.585724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.131 3.869 5 C -0.317 4.317 6 C 0.594 3.406 7 O -0.594 6.594 8 N -0.712 5.712 9 C 0.134 3.866 10 C -0.087 4.087 11 H 0.084 0.916 12 C -0.137 4.137 13 C 0.066 3.934 14 N -0.677 5.677 15 C 0.065 3.935 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.084 3.916 28 N -0.322 5.322 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.206 0.794 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.344 0.656 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 -32.930 -1.292 34.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.022 4.022 5 C -0.333 4.333 6 C 0.383 3.617 7 O -0.476 6.476 8 N -0.364 5.364 9 C 0.010 3.990 10 C -0.106 4.106 11 H 0.102 0.898 12 C -0.194 4.194 13 C -0.063 4.063 14 N -0.309 5.309 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.104 4.104 28 N -0.142 5.142 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.223 0.777 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.121 0.879 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -11.281 -33.788 -2.449 35.705 hybrid contribution 0.191 1.729 1.120 2.069 sum -11.091 -32.059 -1.329 33.949 Atomic orbital electron populations 1.22020 0.93300 1.04230 1.02342 1.22239 0.96538 0.75301 1.06299 1.48990 1.33444 1.11480 1.19753 1.23358 0.90920 0.93439 0.94533 1.20247 1.12711 0.95833 1.04463 1.17464 0.79839 0.81771 0.82614 1.90748 1.48993 1.79638 1.28264 1.45641 1.48553 1.10065 1.32117 1.21233 0.94689 0.87397 0.95706 1.21203 1.00818 0.92629 0.95970 0.89767 1.21710 1.00505 1.01832 0.95347 1.21970 1.01222 0.87611 0.95490 1.60029 1.16649 1.01223 1.53011 1.21526 1.01138 0.88689 0.95419 1.20900 0.83317 0.86638 0.86573 1.90486 1.44337 1.86779 1.29241 1.41944 1.44852 1.06773 1.27586 1.19714 1.29942 0.85577 1.11066 0.90291 1.26029 0.95598 1.02821 0.96779 1.69682 1.32102 1.32118 1.22318 0.84878 0.78289 0.77107 0.78109 1.19732 1.19629 1.19668 1.24468 0.93168 0.98192 0.94535 1.77118 1.24742 0.97878 1.14498 0.92858 0.92812 0.88111 0.88267 0.85255 0.77721 0.75136 0.91799 0.91891 0.92834 0.93112 0.91673 0.90346 0.94063 0.83687 0.91650 0.87949 0.77003 0.91342 0.77094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.09 71.98 0.73 -0.14 16 2 C 0.12 0.56 7.21 86.38 0.62 1.19 16 3 N -0.36 -4.54 3.65 -346.30 -1.26 -5.80 16 4 C 0.13 1.81 11.25 84.27 0.95 2.76 16 5 C -0.32 -5.40 6.13 -20.15 -0.12 -5.52 16 6 C 0.59 12.44 7.81 86.67 0.68 13.12 16 7 O -0.59 -16.89 16.90 -4.03 -0.07 -16.96 16 8 N -0.71 -11.61 5.28 -466.39 -2.46 -14.07 16 9 C 0.13 2.38 5.06 86.38 0.44 2.82 16 10 C -0.09 -1.54 2.57 -10.79 -0.03 -1.56 16 11 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 12 C -0.14 -2.57 8.95 71.98 0.64 -1.92 16 13 C 0.07 1.43 5.07 86.31 0.44 1.87 16 14 N -0.68 -20.17 5.58 -517.92 -2.89 -23.06 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.75 7.82 87.66 0.69 21.44 16 17 O -0.62 -34.24 15.78 -3.06 -0.05 -34.29 16 18 N -0.57 -29.51 5.29 -306.99 -1.62 -31.14 16 19 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.06 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.08 1.22 11.50 85.65 0.99 2.20 16 28 N -0.32 -5.39 12.33 -56.27 -0.69 -6.09 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.13 -0.12 8.06 -2.39 -0.02 -0.14 16 34 H 0.21 1.90 8.06 -2.91 -0.02 1.87 16 35 H 0.41 4.63 6.61 -92.71 -0.61 4.01 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.29 7.75 -2.39 -0.02 1.27 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.94 7.18 -2.39 -0.02 0.92 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.34 10.72 8.43 -89.69 -0.76 9.97 16 44 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 45 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 46 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 47 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 48 H 0.21 1.68 7.50 -2.91 -0.02 1.66 16 Total: -1.00 -78.03 408.20 -0.02 -78.05 By element: Atomic # 1 Polarization: 38.46 SS G_CDS: -1.11 Total: 37.35 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 7.82 Total: 20.54 kcal Atomic # 7 Polarization: -121.11 SS G_CDS: -8.65 Total: -129.75 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.12 Total: -51.25 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -78.03 -0.02 -78.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495632478.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.458 kcal (2) G-P(sol) polarization free energy of solvation -78.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds