Wall clock time and date at job start Tue Mar 31 2020 20:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47129 * 2 1 4 4 C 1.34257 * 125.75623 * 125.30867 * 3 2 1 5 5 C 1.38037 * 107.41681 * 180.11257 * 4 3 2 6 6 C 1.47430 * 126.41442 * 179.87135 * 5 4 3 7 7 O 1.21603 * 119.99989 * 359.70869 * 6 5 4 8 8 N 1.34780 * 120.00034 * 179.71117 * 6 5 4 9 9 C 1.46494 * 120.00059 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47501 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47268 * 305.00906 * 10 9 8 12 12 C 1.53009 * 109.46678 * 65.00107 * 10 9 8 13 13 C 1.52993 * 109.47435 * 185.00167 * 10 9 8 14 14 N 1.46905 * 109.47039 * 175.00361 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47103 * 120.00017 * 23 21 19 26 26 H 1.48494 * 109.47266 * 240.00436 * 23 21 19 27 27 C 1.41293 * 107.17353 * 359.60425 * 5 4 3 28 28 N 1.30450 * 108.02238 * 0.24488 * 27 5 4 29 29 H 1.09006 * 109.47178 * 60.00575 * 1 2 3 30 30 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47287 * 299.99922 * 1 2 3 32 32 H 1.09006 * 109.47724 * 240.00284 * 2 1 3 33 33 H 1.08998 * 109.47458 * 119.99519 * 2 1 3 34 34 H 1.07997 * 126.29122 * 359.96011 * 4 3 2 35 35 H 0.97000 * 119.99981 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47033 * 60.00141 * 9 8 6 37 37 H 1.09003 * 109.47588 * 300.00243 * 9 8 6 38 38 H 1.08995 * 109.46725 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.47462 * 300.00645 * 12 10 9 40 40 H 1.08999 * 109.46618 * 60.00401 * 12 10 9 41 41 H 1.09001 * 109.47393 * 55.00642 * 13 10 9 42 42 H 1.08998 * 109.47408 * 295.00288 * 13 10 9 43 43 H 1.00901 * 110.99869 * 56.04956 * 14 13 10 44 44 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 45 45 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 46 46 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99907 * 179.97438 * 22 21 19 48 48 H 1.07998 * 125.99216 * 180.23582 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8735 1.9110 0.8891 5 6 3.0716 3.2307 0.5362 6 6 3.9338 4.2029 1.2325 7 8 4.5518 3.8665 2.2244 8 7 4.0371 5.4647 0.7699 9 6 4.8933 6.4309 1.4622 10 6 4.8328 7.7771 0.7376 11 1 5.0947 7.6373 -0.3112 12 6 3.4163 8.3469 0.8379 13 6 5.8207 8.7496 1.3849 14 7 5.8501 10.0014 0.6166 15 6 6.7907 10.9612 1.2099 16 6 6.7931 12.2302 0.3970 17 8 6.0816 12.3254 -0.5807 18 7 7.5865 13.2588 0.7558 19 6 7.5891 14.4130 0.0160 20 1 6.9556 14.4978 -0.8546 21 6 8.4067 15.4737 0.3862 22 7 9.1779 15.3704 1.4452 23 14 8.4108 17.0461 -0.6223 24 1 7.4618 16.9093 -1.7563 25 1 7.9956 18.1852 0.2352 26 1 9.7776 17.2940 -1.1472 27 6 2.2982 3.4737 -0.6211 28 7 1.6770 2.3691 -0.9306 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.3219 1.3994 1.7278 35 1 3.5438 5.7331 -0.0210 36 1 5.9209 6.0674 1.4673 37 1 4.5465 6.5542 2.4882 38 1 3.3733 9.3061 0.3221 39 1 2.7125 7.6541 0.3768 40 1 3.1544 8.4867 1.8866 41 1 6.8159 8.3049 1.3930 42 1 5.5077 8.9584 2.4078 43 1 4.9264 10.4002 0.5397 44 1 6.4847 11.1855 2.2318 45 1 7.7924 10.5316 1.2165 46 1 8.1558 13.1826 1.5375 47 1 9.7490 16.1107 1.7034 48 1 2.2327 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495632479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:45 Heat of formation + Delta-G solvation = -6.828092 kcal Electronic energy + Delta-G solvation = -27329.920394 eV Core-core repulsion = 23228.151845 eV Total energy + Delta-G solvation = -4101.768550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79573 -39.51888 -38.35066 -37.16004 -35.08115 -34.80142 -33.83703 -32.29768 -31.17539 -31.01228 -30.08153 -27.38070 -26.91475 -25.02851 -24.36141 -23.44394 -22.49077 -21.14181 -20.60878 -20.05432 -19.20840 -18.27855 -17.85184 -16.56408 -16.43990 -16.16935 -15.80511 -15.69474 -15.40155 -14.96092 -14.63881 -14.54790 -14.42873 -14.16831 -13.91638 -13.69313 -13.42724 -13.24931 -13.04122 -12.94177 -12.74694 -12.68978 -12.56173 -12.09724 -12.01347 -11.56367 -11.52621 -11.41133 -11.12884 -11.06966 -10.92591 -10.85479 -10.33078 -10.20977 -10.07728 -10.06114 -9.50384 -9.33787 -9.00158 -8.44029 -8.03616 -7.93946 -6.40190 -3.80923 1.14485 1.79310 1.83796 3.04204 3.17619 3.23597 3.28125 3.35439 3.86082 3.93001 4.12137 4.26862 4.30702 4.34596 4.40322 4.55317 4.70099 4.76514 4.83135 4.89764 4.92926 5.01191 5.16149 5.17273 5.27412 5.29670 5.41261 5.48758 5.49341 5.60825 5.65366 5.77665 5.82606 5.89857 5.96856 6.01516 6.10931 6.18647 6.29273 6.31178 6.34638 7.07931 7.23641 7.35278 7.56974 7.69163 8.08355 8.08952 8.63095 9.19660 9.56351 10.07718 10.77665 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040390 B = 0.001369 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.071090 B =20446.689869 C =20925.590467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.125 3.875 3 N -0.361 5.361 4 C 0.128 3.872 5 C -0.294 4.294 6 C 0.594 3.406 7 O -0.553 6.553 8 N -0.723 5.723 9 C 0.127 3.873 10 C -0.102 4.102 11 H 0.089 0.911 12 C -0.152 4.152 13 C 0.066 3.934 14 N -0.668 5.668 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.081 3.919 28 N -0.294 5.294 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.188 0.812 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.030 0.970 43 H 0.349 0.651 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 -30.297 1.410 33.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.005 3.995 3 N -0.140 5.140 4 C -0.024 4.024 5 C -0.309 4.309 6 C 0.382 3.618 7 O -0.432 6.432 8 N -0.374 5.374 9 C 0.004 3.996 10 C -0.121 4.121 11 H 0.108 0.892 12 C -0.210 4.210 13 C -0.064 4.064 14 N -0.302 5.302 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.107 4.107 28 N -0.114 5.114 29 H 0.091 0.909 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.205 0.795 35 H 0.234 0.766 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.169 0.831 44 H 0.061 0.939 45 H 0.105 0.895 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -14.903 -31.265 0.259 34.637 hybrid contribution 0.355 1.597 1.063 1.951 sum -14.548 -29.669 1.322 33.070 Atomic orbital electron populations 1.22061 0.93283 1.03219 1.03839 1.21857 0.96535 0.76772 1.04375 1.48679 1.34059 1.10705 1.20583 1.23001 0.91426 0.93603 0.94364 1.20262 1.11709 0.95425 1.03535 1.17210 0.80222 0.81233 0.83130 1.90777 1.47112 1.78853 1.26415 1.45747 1.49064 1.10628 1.31970 1.21366 0.94784 0.87373 0.96127 1.21369 0.96143 0.93178 1.01409 0.89243 1.21903 0.95443 1.01609 1.02036 1.21881 0.99167 0.90854 0.94513 1.60090 1.13731 1.04363 1.52003 1.21671 0.97949 0.92819 0.95814 1.19824 0.84779 0.84977 0.87781 1.90517 1.44616 1.82416 1.29249 1.41870 1.37808 1.12930 1.27466 1.19759 1.23080 0.90424 1.09586 0.87868 1.25260 0.96112 0.99705 0.96867 1.69624 1.26220 1.33300 1.25183 0.85805 0.78116 0.80914 0.79539 1.19212 1.20797 1.20751 1.24096 0.94098 0.97522 0.94967 1.77161 1.23830 0.97123 1.13280 0.90871 0.90372 0.91905 0.89191 0.88150 0.79535 0.76572 0.91170 0.91356 0.91448 0.92708 0.92659 0.90751 0.95180 0.83071 0.93868 0.89547 0.77449 0.91941 0.79336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.54 10.09 37.15 0.37 -0.17 16 2 C 0.13 0.42 7.21 -4.04 -0.03 0.39 16 3 N -0.36 -2.52 3.65 -60.81 -0.22 -2.74 16 4 C 0.13 0.96 11.25 -16.56 -0.19 0.77 16 5 C -0.29 -2.63 6.13 -105.07 -0.64 -3.28 16 6 C 0.59 6.42 7.81 -12.52 -0.10 6.32 16 7 O -0.55 -7.91 16.90 5.27 0.09 -7.82 16 8 N -0.72 -6.32 5.28 -61.38 -0.32 -6.65 16 9 C 0.13 1.21 5.06 -4.04 -0.02 1.19 16 10 C -0.10 -0.98 2.63 -90.62 -0.24 -1.22 16 11 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.15 -1.38 8.84 37.16 0.33 -1.05 16 13 C 0.07 0.78 5.14 -3.82 -0.02 0.76 16 14 N -0.67 -10.53 6.12 -115.06 -0.70 -11.24 16 15 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 16 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16 17 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 18 N -0.56 -14.36 5.29 -10.96 -0.06 -14.42 16 19 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.08 0.63 11.50 -16.98 -0.20 0.44 16 28 N -0.29 -2.59 12.33 30.86 0.38 -2.21 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.11 8.14 -51.92 -0.42 -0.32 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.09 8.06 -51.93 -0.42 -0.33 16 34 H 0.19 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.40 2.58 6.61 -40.82 -0.27 2.31 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.70 6.68 -51.93 -0.35 0.36 16 39 H 0.05 0.40 7.18 -51.93 -0.37 0.03 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.35 5.63 6.68 -39.29 -0.26 5.37 16 44 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.39 9.55 7.90 -40.82 -0.32 9.22 16 47 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.19 0.90 7.50 -52.49 -0.39 0.50 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -35.92 405.94 -7.41 -43.33 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -7.39 Total: 11.88 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -1.08 Total: 7.34 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.20 Total: -61.16 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.18 Total: -23.59 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.92 -7.41 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495632479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.504 kcal (2) G-P(sol) polarization free energy of solvation -35.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds