Wall clock time and date at job start Tue Mar 31 2020 20:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47129 * 2 1 4 4 C 1.34257 * 125.75623 * 125.30867 * 3 2 1 5 5 C 1.38037 * 107.41681 * 180.11257 * 4 3 2 6 6 C 1.47430 * 126.41442 * 179.87135 * 5 4 3 7 7 O 1.21603 * 119.99989 * 359.70869 * 6 5 4 8 8 N 1.34780 * 120.00034 * 179.71117 * 6 5 4 9 9 C 1.46494 * 120.00059 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47501 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.47268 * 305.00906 * 10 9 8 12 12 C 1.53009 * 109.46678 * 65.00107 * 10 9 8 13 13 C 1.52993 * 109.47435 * 185.00167 * 10 9 8 14 14 N 1.46905 * 109.47039 * 175.00361 * 13 10 9 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00024 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99767 * 180.02562 * 16 15 14 19 19 C 1.37097 * 119.99759 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00171 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00074 * 179.97438 * 19 18 16 22 22 N 1.31416 * 119.99768 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00310 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47134 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47103 * 120.00017 * 23 21 19 26 26 H 1.48494 * 109.47266 * 240.00436 * 23 21 19 27 27 C 1.41293 * 107.17353 * 359.60425 * 5 4 3 28 28 N 1.30450 * 108.02238 * 0.24488 * 27 5 4 29 29 H 1.09006 * 109.47178 * 60.00575 * 1 2 3 30 30 H 1.09008 * 109.46996 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47287 * 299.99922 * 1 2 3 32 32 H 1.09006 * 109.47724 * 240.00284 * 2 1 3 33 33 H 1.08998 * 109.47458 * 119.99519 * 2 1 3 34 34 H 1.07997 * 126.29122 * 359.96011 * 4 3 2 35 35 H 0.97000 * 119.99981 * 0.02562 * 8 6 5 36 36 H 1.09001 * 109.47033 * 60.00141 * 9 8 6 37 37 H 1.09003 * 109.47588 * 300.00243 * 9 8 6 38 38 H 1.08995 * 109.46725 * 179.97438 * 12 10 9 39 39 H 1.08995 * 109.47462 * 300.00645 * 12 10 9 40 40 H 1.08999 * 109.46618 * 60.00401 * 12 10 9 41 41 H 1.09001 * 109.47393 * 55.00642 * 13 10 9 42 42 H 1.08998 * 109.47408 * 295.00288 * 13 10 9 43 43 H 1.00901 * 110.99869 * 56.04956 * 14 13 10 44 44 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 45 45 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 46 46 H 0.96997 * 120.00713 * 359.97438 * 18 16 15 47 47 H 0.96999 * 119.99907 * 179.97438 * 22 21 19 48 48 H 1.07998 * 125.99216 * 180.23582 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8735 1.9110 0.8891 5 6 3.0716 3.2307 0.5362 6 6 3.9338 4.2029 1.2325 7 8 4.5518 3.8665 2.2244 8 7 4.0371 5.4647 0.7699 9 6 4.8933 6.4309 1.4622 10 6 4.8328 7.7771 0.7376 11 1 5.0947 7.6373 -0.3112 12 6 3.4163 8.3469 0.8379 13 6 5.8207 8.7496 1.3849 14 7 5.8501 10.0014 0.6166 15 6 6.7907 10.9612 1.2099 16 6 6.7931 12.2302 0.3970 17 8 6.0816 12.3254 -0.5807 18 7 7.5865 13.2588 0.7558 19 6 7.5891 14.4130 0.0160 20 1 6.9556 14.4978 -0.8546 21 6 8.4067 15.4737 0.3862 22 7 9.1779 15.3704 1.4452 23 14 8.4108 17.0461 -0.6223 24 1 7.4618 16.9093 -1.7563 25 1 7.9956 18.1852 0.2352 26 1 9.7776 17.2940 -1.1472 27 6 2.2982 3.4737 -0.6211 28 7 1.6770 2.3691 -0.9306 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.3219 1.3994 1.7278 35 1 3.5438 5.7331 -0.0210 36 1 5.9209 6.0674 1.4673 37 1 4.5465 6.5542 2.4882 38 1 3.3733 9.3061 0.3221 39 1 2.7125 7.6541 0.3768 40 1 3.1544 8.4867 1.8866 41 1 6.8159 8.3049 1.3930 42 1 5.5077 8.9584 2.4078 43 1 4.9264 10.4002 0.5397 44 1 6.4847 11.1855 2.2318 45 1 7.7924 10.5316 1.2165 46 1 8.1558 13.1826 1.5375 47 1 9.7490 16.1107 1.7034 48 1 2.2327 4.4098 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495632479.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:44 Heat of formation + Delta-G solvation = -34.631238 kcal Electronic energy + Delta-G solvation = -27331.126029 eV Core-core repulsion = 23228.151845 eV Total energy + Delta-G solvation = -4102.974185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36310 -40.36794 -40.09930 -38.23533 -36.14732 -35.64555 -35.40411 -33.41164 -33.09679 -31.55415 -30.63536 -28.75889 -27.72224 -26.55485 -25.05666 -24.44353 -23.31537 -21.68700 -21.39274 -21.11943 -20.69397 -19.89232 -18.87935 -17.90074 -17.18050 -17.04730 -16.78423 -16.68909 -16.46077 -16.21584 -15.93622 -15.54917 -15.40066 -15.26552 -15.05286 -14.67178 -14.51562 -14.27302 -13.93140 -13.79360 -13.54315 -13.42458 -13.38905 -13.25772 -13.06108 -12.98293 -12.78009 -12.47025 -12.39408 -12.10902 -12.04686 -11.87984 -11.79933 -11.70460 -11.50011 -10.92072 -10.59799 -10.32730 -10.12819 -10.00157 -9.62017 -9.29179 -8.45668 -5.94347 0.54736 1.17515 1.37675 1.40318 1.43000 1.57229 2.06572 2.27063 2.33567 2.49346 2.99164 3.21917 3.47058 3.56714 3.79185 3.92895 3.96566 4.03036 4.04210 4.07785 4.14269 4.35075 4.35640 4.42042 4.50088 4.57477 4.60335 4.63657 4.69232 4.79387 4.83521 4.86218 4.88525 5.00810 5.06002 5.20901 5.31080 5.39742 5.42438 5.43687 5.54521 5.88783 5.91015 6.12596 6.45186 6.50428 6.61393 6.66598 7.13892 7.32216 7.57703 8.12808 8.72007 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040390 B = 0.001369 C = 0.001338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.071090 B =20446.689869 C =20925.590467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.358 5.358 4 C 0.131 3.869 5 C -0.317 4.317 6 C 0.594 3.406 7 O -0.594 6.594 8 N -0.713 5.713 9 C 0.135 3.865 10 C -0.089 4.089 11 H 0.086 0.914 12 C -0.150 4.150 13 C 0.066 3.934 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.271 1.271 27 C 0.084 3.916 28 N -0.322 5.322 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.129 0.871 34 H 0.206 0.794 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.041 0.959 43 H 0.345 0.655 44 H 0.066 0.934 45 H 0.104 0.896 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.889 -31.374 1.672 34.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.137 5.137 4 C -0.022 4.022 5 C -0.332 4.332 6 C 0.383 3.617 7 O -0.476 6.476 8 N -0.364 5.364 9 C 0.010 3.990 10 C -0.108 4.108 11 H 0.105 0.895 12 C -0.208 4.208 13 C -0.063 4.063 14 N -0.315 5.315 15 C -0.069 4.069 16 C 0.225 3.775 17 O -0.509 6.509 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.104 4.104 28 N -0.142 5.142 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.147 0.853 34 H 0.223 0.777 35 H 0.249 0.751 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.165 0.835 44 H 0.084 0.916 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -15.223 -32.361 0.511 35.766 hybrid contribution 0.407 1.828 0.981 2.114 sum -14.816 -30.533 1.492 33.971 Atomic orbital electron populations 1.22019 0.93273 1.04232 1.02352 1.22241 0.96561 0.75298 1.06286 1.48992 1.33424 1.11485 1.19766 1.23357 0.90904 0.93435 0.94550 1.20245 1.12682 0.95845 1.04478 1.17466 0.79850 0.81751 0.82618 1.90749 1.48974 1.79621 1.28287 1.45642 1.48629 1.10019 1.32091 1.21221 0.94553 0.87236 0.95944 1.21210 0.95974 0.92663 1.00935 0.89542 1.21884 0.95438 1.01293 1.02166 1.21968 1.00216 0.89375 0.94783 1.60090 1.13197 1.05040 1.53136 1.21539 0.99605 0.90196 0.95547 1.20898 0.82992 0.86156 0.87463 1.90485 1.45841 1.83435 1.31157 1.41939 1.38547 1.13007 1.27572 1.19719 1.24224 0.92344 1.10058 0.90286 1.26032 0.95199 1.02214 0.97760 1.69681 1.26264 1.34376 1.25863 0.84873 0.78290 0.77200 0.77993 1.19736 1.19600 1.19663 1.24468 0.93173 0.98201 0.94525 1.77122 1.24772 0.97876 1.14468 0.92812 0.88117 0.92824 0.88303 0.85253 0.77717 0.75145 0.91867 0.91754 0.92855 0.90892 0.92482 0.90227 0.94055 0.83496 0.91625 0.87827 0.76979 0.91323 0.77097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 10.09 71.98 0.73 -0.13 16 2 C 0.11 0.57 7.21 86.38 0.62 1.19 16 3 N -0.36 -4.55 3.65 -346.30 -1.26 -5.81 16 4 C 0.13 1.81 11.25 84.27 0.95 2.76 16 5 C -0.32 -5.41 6.13 -20.15 -0.12 -5.53 16 6 C 0.59 12.46 7.81 86.66 0.68 13.13 16 7 O -0.59 -16.90 16.90 -4.04 -0.07 -16.97 16 8 N -0.71 -11.64 5.28 -466.36 -2.46 -14.10 16 9 C 0.13 2.40 5.06 86.38 0.44 2.84 16 10 C -0.09 -1.58 2.63 -10.79 -0.03 -1.61 16 11 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 12 C -0.15 -2.51 8.84 71.99 0.64 -1.88 16 13 C 0.07 1.44 5.14 86.30 0.44 1.88 16 14 N -0.68 -20.75 6.12 -517.93 -3.17 -23.92 16 15 C 0.06 2.16 6.17 85.56 0.53 2.69 16 16 C 0.44 20.85 7.82 87.66 0.69 21.54 16 17 O -0.62 -34.50 15.78 -3.07 -0.05 -34.55 16 18 N -0.57 -29.55 5.29 -306.99 -1.62 -31.17 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.86 13.05 21.66 0.28 -49.58 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 C 0.08 1.22 11.50 85.65 0.99 2.20 16 28 N -0.32 -5.40 12.33 -56.27 -0.69 -6.10 16 29 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 33 H 0.13 -0.12 8.06 -2.39 -0.02 -0.14 16 34 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.41 4.64 6.61 -92.71 -0.61 4.03 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.07 6.68 -2.39 -0.02 1.05 16 39 H 0.07 0.94 7.18 -2.39 -0.02 0.92 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.35 10.97 6.68 -89.69 -0.60 10.37 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.40 19.40 7.90 -92.71 -0.73 18.66 16 47 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 48 H 0.21 1.69 7.50 -2.91 -0.02 1.66 16 Total: -1.00 -78.37 405.94 -0.15 -78.51 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.95 Total: 37.97 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.82 Total: 20.65 kcal Atomic # 7 Polarization: -121.76 SS G_CDS: -8.93 Total: -130.69 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -0.12 Total: -51.51 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -78.37 -0.15 -78.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495632479.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.881 kcal (2) G-P(sol) polarization free energy of solvation -78.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds