Wall clock time and date at job start Tue Mar 31 2020 20:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47092 * 2 1 4 4 C 1.53009 * 109.47099 * 240.01070 * 2 1 3 5 5 N 1.46502 * 109.47036 * 64.99287 * 4 2 1 6 6 C 1.36938 * 119.99335 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00551 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99557 * 180.02562 * 6 5 4 9 9 N 1.31616 * 120.00170 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00105 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47225 * 90.00002 * 10 8 6 12 12 H 1.48502 * 109.47473 * 210.00469 * 10 8 6 13 13 H 1.48501 * 109.47055 * 330.00228 * 10 8 6 14 14 C 1.52998 * 109.47616 * 120.00633 * 2 1 3 15 15 N 1.46496 * 109.46846 * 294.99841 * 14 2 1 16 16 C 1.34777 * 119.99613 * 179.97438 * 15 14 2 17 17 O 1.21596 * 120.00401 * 0.02562 * 16 15 14 18 18 C 1.47526 * 119.99847 * 180.02562 * 16 15 14 19 19 C 1.36594 * 125.76985 * 179.72321 * 18 16 15 20 20 N 1.34812 * 106.84114 * 179.83926 * 19 18 16 21 21 C 1.46499 * 126.59765 * 180.11331 * 20 19 18 22 22 C 1.53177 * 109.54283 * 35.15403 * 21 20 19 23 23 C 1.53110 * 109.15723 * 183.24191 * 22 21 20 24 24 O 1.42899 * 109.48471 * 57.47211 * 23 22 21 25 25 C 1.42907 * 114.10071 * 298.88849 * 24 23 22 26 26 C 1.53086 * 109.41180 * 61.16018 * 25 24 23 27 27 N 1.40215 * 106.80725 * 0.41231 * 20 19 18 28 28 N 1.28754 * 108.36555 * 359.73519 * 27 20 19 29 29 H 1.08995 * 109.47458 * 59.99369 * 1 2 3 30 30 H 1.09005 * 109.46864 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46892 * 299.98945 * 1 2 3 32 32 H 1.08997 * 109.47126 * 184.99887 * 4 2 1 33 33 H 1.09000 * 109.46311 * 304.99834 * 4 2 1 34 34 H 0.96999 * 120.00179 * 0.02562 * 5 4 2 35 35 H 0.97002 * 120.00431 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.47106 * 174.99893 * 14 2 1 37 37 H 1.08999 * 109.46731 * 54.99781 * 14 2 1 38 38 H 0.96996 * 120.00516 * 0.02562 * 15 14 2 39 39 H 1.08008 * 126.58143 * 359.97438 * 19 18 16 40 40 H 1.08999 * 109.54216 * 155.33125 * 21 20 19 41 41 H 1.08999 * 109.51985 * 303.05796 * 22 21 20 42 42 H 1.08998 * 109.52395 * 63.25076 * 22 21 20 43 43 H 1.08999 * 109.40720 * 297.49433 * 23 22 21 44 44 H 1.08997 * 109.48552 * 177.49936 * 23 22 21 45 45 H 1.08999 * 109.48298 * 301.17569 * 25 24 23 46 46 H 1.09001 * 109.48079 * 181.14369 * 25 24 23 47 47 H 1.09007 * 109.52284 * 182.48577 * 26 25 24 48 48 H 1.09001 * 109.57749 * 62.33161 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 7 1.6523 0.0357 -2.4425 6 6 2.0009 -0.4204 -3.6857 7 1 2.5613 -1.3381 -3.7868 8 6 1.6340 0.2969 -4.8161 9 7 0.9515 1.4156 -4.6929 10 14 2.1089 -0.3254 -6.5121 11 1 1.0377 -1.2130 -7.0316 12 1 2.2854 0.8277 -7.4311 13 1 3.3813 -1.0857 -6.4220 14 6 2.0401 -0.7214 1.2491 15 7 1.6526 0.0351 2.4423 16 6 1.9958 -0.4140 3.6658 17 8 2.6275 -1.4467 3.7793 18 6 1.6052 0.3475 4.8674 19 6 1.8845 0.0002 6.1586 20 7 1.3562 0.9600 6.9442 21 6 1.4068 1.0170 8.4072 22 6 2.7433 0.4505 8.8962 23 6 2.7542 0.4393 10.4273 24 8 1.6484 -0.3288 10.9062 25 6 0.3714 0.1830 10.5195 26 6 0.2639 0.1818 8.9925 27 7 0.7431 1.8895 6.0921 28 7 0.9093 1.4973 4.8771 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 3.1263 -0.7993 -1.2058 33 1 1.6053 -1.7196 -1.2954 34 1 1.1486 0.8597 -2.3517 35 1 0.6954 1.9170 -5.4828 36 1 3.1264 -0.7995 1.2053 37 1 1.6055 -1.7199 1.2949 38 1 1.1484 0.8588 2.3518 39 1 2.4267 -0.8743 6.4870 40 1 1.3074 2.0517 8.7354 41 1 2.8653 -0.5670 8.5249 42 1 3.5591 1.0734 8.5294 43 1 2.6744 1.4613 10.7975 44 1 3.6850 -0.0040 10.7810 45 1 0.2604 1.2017 10.8910 46 1 -0.4143 -0.4449 10.9398 47 1 -0.6919 0.6128 8.6942 48 1 0.3336 -0.8410 8.6222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495782958.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:15 Heat of formation + Delta-G solvation = -10.493402 kcal Electronic energy + Delta-G solvation = -28203.622530 eV Core-core repulsion = 24101.695041 eV Total energy + Delta-G solvation = -4101.927490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.39733 -40.68604 -40.25549 -38.21585 -36.52003 -35.96188 -34.13298 -32.70793 -32.34124 -32.15806 -31.56059 -27.91810 -27.30382 -26.47137 -25.08054 -24.64728 -23.74986 -23.44273 -21.66331 -21.24922 -21.21179 -19.54457 -18.92572 -17.68467 -17.34408 -17.31730 -16.93368 -16.75425 -16.45454 -16.29304 -15.90888 -15.77952 -15.58694 -15.42624 -15.20628 -14.91334 -14.87048 -14.60615 -14.12052 -13.61755 -13.57294 -13.49559 -13.40178 -12.95260 -12.79261 -12.76888 -12.63169 -12.45103 -12.27416 -12.18613 -12.15743 -11.98429 -11.73700 -11.64729 -11.50670 -11.28514 -11.26606 -10.92657 -10.74648 -10.48819 -10.07299 -8.97576 -7.93686 -5.22084 0.05576 0.54931 0.91849 1.48604 1.50327 1.58810 2.06048 2.18120 2.58010 2.87969 3.07755 3.13703 3.40015 3.42755 3.60502 3.72716 3.74473 3.79495 3.84934 3.97466 4.08226 4.09281 4.14821 4.21544 4.34872 4.45046 4.52593 4.55689 4.58733 4.66278 4.72404 4.76711 4.79333 4.88237 4.94742 4.95354 5.04194 5.05045 5.14689 5.29999 5.35933 5.38977 5.47332 5.51701 6.17480 6.28480 6.37206 6.82939 7.07479 7.35372 8.11206 8.35023 9.29822 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.040586 B = 0.001575 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.724037 B =17770.288004 C =18067.542564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.247 4.247 7 H 0.076 0.924 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.974 3.026 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.270 1.270 14 C 0.138 3.862 15 N -0.704 5.704 16 C 0.604 3.396 17 O -0.568 6.568 18 C -0.120 4.120 19 C 0.110 3.890 20 N -0.343 5.343 21 C 0.143 3.857 22 C -0.166 4.166 23 C 0.065 3.935 24 O -0.398 6.398 25 C 0.067 3.933 26 C -0.164 4.164 27 N -0.083 5.083 28 N -0.223 5.223 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -1.232 38.397 38.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.379 4.379 7 H 0.094 0.906 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.214 1.214 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.015 3.985 15 N -0.354 5.354 16 C 0.389 3.611 17 O -0.447 6.447 18 C -0.260 4.260 19 C -0.048 4.048 20 N -0.127 5.127 21 C 0.043 3.957 22 C -0.205 4.205 23 C -0.012 4.012 24 O -0.317 6.317 25 C -0.011 4.011 26 C -0.202 4.202 27 N -0.063 5.063 28 N -0.096 5.096 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.105 0.895 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.813 -0.919 38.408 38.428 hybrid contribution 0.135 -0.061 -1.530 1.538 sum 0.949 -0.980 36.878 36.903 Atomic orbital electron populations 1.21724 0.94142 1.02009 1.01466 1.21344 0.97012 1.00069 0.93061 0.90663 1.20725 0.96693 0.94148 0.85348 1.42525 1.66834 1.27792 1.01392 1.19662 1.27879 1.05304 0.85028 0.90645 1.25558 1.01749 0.97869 1.01571 1.69814 1.45212 1.17838 1.29077 0.85131 0.78045 0.76774 0.79749 1.21413 1.22177 1.19485 1.21252 1.00089 0.95056 0.82145 1.45778 1.56589 1.28038 1.05019 1.16913 0.78590 0.83445 0.82183 1.90792 1.42120 1.24935 1.86829 1.21407 1.11485 0.98167 0.94908 1.23626 0.96266 0.95483 0.89393 1.50909 1.36418 1.16015 1.09339 1.22054 0.98479 1.04132 0.71054 1.22731 0.95108 1.03630 0.99060 1.22707 0.90754 0.97443 0.90267 1.87993 1.14799 1.53882 1.75027 1.22675 0.85990 1.01264 0.91126 1.22676 0.98248 1.00951 0.98364 1.81940 1.18423 1.12885 0.93036 1.74623 1.11117 1.09691 1.14151 0.93832 0.92593 0.91326 0.95898 0.95717 0.79189 0.94029 0.91176 0.90884 0.74982 0.75579 0.85495 0.89342 0.88477 0.90936 0.86432 0.90839 0.86896 0.89520 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.94 71.98 0.64 -3.55 16 2 C -0.10 -3.03 2.46 -10.79 -0.03 -3.05 16 3 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.16 6.33 5.65 86.38 0.49 6.82 16 5 N -0.74 -38.09 5.33 -343.43 -1.83 -39.92 16 6 C -0.25 -14.02 9.99 84.03 0.84 -13.18 16 7 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 8 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 9 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 10 Si 0.97 46.73 29.55 68.60 2.03 48.76 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C 0.14 3.83 5.06 86.38 0.44 4.26 16 15 N -0.70 -18.07 5.28 -466.28 -2.46 -20.54 16 16 C 0.60 16.12 7.82 86.69 0.68 16.80 16 17 O -0.57 -17.69 16.86 -4.02 -0.07 -17.75 16 18 C -0.12 -2.74 6.99 40.82 0.29 -2.45 16 19 C 0.11 1.77 10.40 83.85 0.87 2.64 16 20 N -0.34 -4.93 3.55 -325.98 -1.16 -6.09 16 21 C 0.14 1.00 3.31 45.11 0.15 1.15 16 22 C -0.17 -0.64 5.15 30.69 0.16 -0.48 16 23 C 0.07 0.19 6.84 72.02 0.49 0.68 16 24 O -0.40 -3.01 10.77 -148.98 -1.60 -4.62 16 25 C 0.07 0.27 6.84 72.01 0.49 0.76 16 26 C -0.16 -0.98 5.75 30.68 0.18 -0.81 16 27 N -0.08 -1.80 13.78 37.02 0.51 -1.29 16 28 N -0.22 -5.47 12.04 -50.00 -0.60 -6.07 16 29 H 0.04 1.58 7.18 -2.39 -0.02 1.57 16 30 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 1.77 7.18 -2.38 -0.02 1.75 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.38 20.35 6.85 -92.71 -0.64 19.71 16 35 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 9.92 7.34 -92.71 -0.68 9.24 16 39 H 0.23 2.31 7.28 -2.91 -0.02 2.29 16 40 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.37 7.09 -2.39 -0.02 0.35 16 42 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.12 0.10 8.14 -2.39 -0.02 0.09 16 45 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.55 395.29 0.92 -73.63 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -0.33 Total: 27.77 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.15 Total: 5.68 kcal Atomic # 7 Polarization: -128.21 SS G_CDS: -5.26 Total: -133.47 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -1.67 Total: -22.37 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.55 0.92 -73.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782958.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.142 kcal (2) G-P(sol) polarization free energy of solvation -74.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds