Wall clock time and date at job start Tue Mar 31 2020 20:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21600 * 120.00148 * 359.97438 * 16 15 14 18 18 C 1.47523 * 120.00470 * 179.97438 * 16 15 14 19 19 C 1.36594 * 125.77318 * 179.71660 * 18 16 15 20 20 N 1.34819 * 106.83465 * 179.89915 * 19 18 16 21 21 C 1.46508 * 126.58944 * 180.12914 * 20 19 18 22 22 C 1.53177 * 109.54182 * 35.07255 * 21 20 19 23 23 C 1.53101 * 109.15316 * 183.24160 * 22 21 20 24 24 O 1.42902 * 109.49359 * 57.47347 * 23 22 21 25 25 C 1.42903 * 114.09149 * 298.88725 * 24 23 22 26 26 C 1.53098 * 109.41622 * 61.16035 * 25 24 23 27 27 N 1.40199 * 106.81411 * 0.35695 * 20 19 18 28 28 N 1.28761 * 108.37112 * 359.77228 * 27 20 19 29 29 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 31 31 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 33 33 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 34 34 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 35 35 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 37 37 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 38 38 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 39 39 H 1.07993 * 126.58212 * 0.03645 * 19 18 16 40 40 H 1.08997 * 109.53741 * 155.24582 * 21 20 19 41 41 H 1.09003 * 109.51949 * 303.04968 * 22 21 20 42 42 H 1.09000 * 109.52496 * 63.24268 * 22 21 20 43 43 H 1.08998 * 109.40542 * 297.48713 * 23 22 21 44 44 H 1.09010 * 109.47902 * 177.50095 * 23 22 21 45 45 H 1.08991 * 109.48464 * 301.17590 * 25 24 23 46 46 H 1.09003 * 109.47754 * 181.13385 * 25 24 23 47 47 H 1.08996 * 109.52025 * 182.48445 * 26 25 24 48 48 H 1.08999 * 109.57367 * 62.31939 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6288 -1.4453 -3.7796 18 6 1.6057 0.3486 -4.8675 19 6 1.8950 0.0076 -6.1581 20 7 1.3577 0.9621 -6.9440 21 6 1.4095 1.0202 -8.4070 22 6 1.3385 -0.3990 -8.9790 23 6 1.4748 -0.3340 -10.5025 24 8 2.7028 0.3119 -10.8443 25 6 2.8035 1.6585 -10.3765 26 6 2.7230 1.6734 -8.8477 27 7 0.7444 1.8913 -6.0919 28 7 0.9099 1.4986 -4.8768 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1264 -0.7995 1.2056 33 1 1.6054 -1.7198 1.2950 34 1 1.1483 0.8591 2.3518 35 1 0.6807 1.9070 5.4838 36 1 3.1264 -0.7994 -1.2056 37 1 1.6054 -1.7198 -1.2953 38 1 1.1483 0.8592 -2.3518 39 1 2.4462 -0.8612 -6.4861 40 1 0.5685 1.6055 -8.7786 41 1 2.1504 -0.9986 -8.5672 42 1 0.3817 -0.8502 -8.7163 43 1 0.6395 0.2303 -10.9170 44 1 1.4695 -1.3445 -10.9114 45 1 1.9856 2.2489 -10.7893 46 1 3.7556 2.0835 -10.6945 47 1 2.7553 2.7030 -8.4914 48 1 3.5636 1.1176 -8.4323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495782959.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:18 Heat of formation + Delta-G solvation = -10.398665 kcal Electronic energy + Delta-G solvation = -28202.192414 eV Core-core repulsion = 24100.269033 eV Total energy + Delta-G solvation = -4101.923381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.39673 -40.68600 -40.25562 -38.21517 -36.51943 -35.95977 -34.13179 -32.70802 -32.34111 -32.15747 -31.55985 -27.91757 -27.30239 -26.47080 -25.08026 -24.64655 -23.74908 -23.44249 -21.66307 -21.24935 -21.21200 -19.54336 -18.92348 -17.67718 -17.38595 -17.28638 -16.97641 -16.66059 -16.44255 -16.36331 -15.91320 -15.79966 -15.53908 -15.38392 -15.27258 -14.91551 -14.83784 -14.62508 -14.11557 -13.61479 -13.56958 -13.49730 -13.40118 -12.94766 -12.78088 -12.75551 -12.63431 -12.44762 -12.27248 -12.20816 -12.16862 -11.98911 -11.74022 -11.64521 -11.50711 -11.28528 -11.26623 -10.91444 -10.74670 -10.48867 -10.07353 -8.97429 -7.93358 -5.21844 0.05567 0.54880 0.91840 1.48614 1.51798 1.57840 2.06008 2.18097 2.58303 2.88007 3.07749 3.13756 3.40122 3.42713 3.60506 3.72729 3.74479 3.79425 3.84950 3.97479 4.08215 4.09319 4.14750 4.21578 4.35005 4.45044 4.52568 4.55683 4.58710 4.66279 4.72392 4.76667 4.79348 4.88214 4.94770 4.95335 5.04189 5.05161 5.14694 5.29961 5.35909 5.39012 5.47369 5.51543 6.17468 6.28659 6.37177 6.82897 7.07442 7.35536 8.11417 8.35247 9.29916 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039256 B = 0.001575 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.095555 B =17771.231533 C =18019.991552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.096 4.096 3 H 0.075 0.925 4 C 0.158 3.842 5 N -0.742 5.742 6 C -0.248 4.248 7 H 0.075 0.925 8 C -0.075 4.075 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.278 1.278 12 H -0.295 1.295 13 H -0.278 1.278 14 C 0.138 3.862 15 N -0.704 5.704 16 C 0.604 3.396 17 O -0.568 6.568 18 C -0.120 4.120 19 C 0.110 3.890 20 N -0.343 5.343 21 C 0.143 3.857 22 C -0.166 4.166 23 C 0.065 3.935 24 O -0.398 6.398 25 C 0.067 3.933 26 C -0.164 4.164 27 N -0.083 5.083 28 N -0.223 5.223 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.023 0.977 33 H 0.025 0.975 34 H 0.376 0.624 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.228 0.772 40 H 0.127 0.873 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.567 -1.479 -38.389 38.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.031 3.969 5 N -0.385 5.385 6 C -0.380 4.380 7 H 0.093 0.907 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.803 3.197 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.204 1.204 14 C 0.015 3.985 15 N -0.354 5.354 16 C 0.389 3.611 17 O -0.447 6.447 18 C -0.260 4.260 19 C -0.048 4.048 20 N -0.127 5.127 21 C 0.043 3.957 22 C -0.205 4.205 23 C -0.012 4.012 24 O -0.317 6.317 25 C -0.010 4.010 26 C -0.203 4.203 27 N -0.063 5.063 28 N -0.096 5.096 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.208 0.792 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.244 0.756 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.131 0.869 47 H 0.104 0.896 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.423 -1.094 -38.390 38.408 hybrid contribution 0.084 -0.113 1.519 1.526 sum 0.508 -1.207 -36.871 36.894 Atomic orbital electron populations 1.21724 0.94121 1.02018 1.01469 1.21344 0.97029 1.00058 0.93058 0.90682 1.20720 0.96686 0.94144 0.85355 1.42517 1.66933 1.27723 1.01364 1.19627 1.27935 1.05433 0.85019 0.90668 1.25563 1.01668 0.97910 1.01583 1.69812 1.44983 1.17980 1.29142 0.85198 0.77875 0.77158 0.79437 1.20440 1.22119 1.20415 1.21254 1.00071 0.95069 0.82147 1.45779 1.56573 1.28048 1.05021 1.16913 0.78586 0.83451 0.82184 1.90793 1.42089 1.24972 1.86830 1.21409 1.11371 0.98263 0.94922 1.23625 0.96072 0.95693 0.89381 1.50910 1.36067 1.16348 1.09354 1.22057 1.01766 1.00681 0.71206 1.22730 1.05429 0.93712 0.98641 1.22710 0.86872 1.00116 0.91488 1.87995 1.39121 1.27312 1.77276 1.22674 1.04516 0.83579 0.90275 1.22678 0.95851 1.02630 0.99114 1.81936 1.18545 1.12760 0.93041 1.74633 1.11273 1.09528 1.14152 0.93837 0.91316 0.92576 0.95921 0.95728 0.79191 0.94026 0.91220 0.90847 0.74980 0.75580 0.85473 0.89355 0.88422 0.90920 0.86418 0.90821 0.86925 0.89551 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 8.94 71.98 0.64 -3.55 16 2 C -0.10 -3.03 2.46 -10.79 -0.03 -3.06 16 3 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 4 C 0.16 6.34 5.65 86.38 0.49 6.83 16 5 N -0.74 -38.13 5.33 -343.46 -1.83 -39.96 16 6 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 7 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 8 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 9 N -0.97 -59.84 13.06 21.65 0.28 -59.56 16 10 Si 0.97 46.72 29.55 68.60 2.03 48.74 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 14 C 0.14 3.83 5.06 86.38 0.44 4.27 16 15 N -0.70 -18.09 5.28 -466.27 -2.46 -20.55 16 16 C 0.60 16.13 7.82 86.69 0.68 16.81 16 17 O -0.57 -17.70 16.86 -4.03 -0.07 -17.77 16 18 C -0.12 -2.74 6.99 40.81 0.29 -2.45 16 19 C 0.11 1.77 10.40 83.85 0.87 2.64 16 20 N -0.34 -4.93 3.55 -325.97 -1.16 -6.09 16 21 C 0.14 1.00 3.31 45.11 0.15 1.15 16 22 C -0.17 -0.62 5.15 30.69 0.16 -0.47 16 23 C 0.07 0.18 6.84 72.02 0.49 0.68 16 24 O -0.40 -3.03 10.77 -148.98 -1.60 -4.63 16 25 C 0.07 0.27 6.84 72.01 0.49 0.77 16 26 C -0.16 -1.01 5.75 30.69 0.18 -0.83 16 27 N -0.08 -1.80 13.78 37.02 0.51 -1.29 16 28 N -0.22 -5.47 12.04 -49.99 -0.60 -6.07 16 29 H 0.04 1.58 7.18 -2.39 -0.02 1.56 16 30 H 0.07 1.77 7.18 -2.39 -0.02 1.75 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.38 20.36 6.85 -92.71 -0.63 19.73 16 35 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 36 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.41 9.93 7.34 -92.71 -0.68 9.25 16 39 H 0.23 2.31 7.27 -2.91 -0.02 2.29 16 40 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.36 7.08 -2.39 -0.02 0.34 16 42 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.12 0.09 8.14 -2.38 -0.02 0.07 16 45 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -74.54 395.29 0.92 -73.63 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -0.33 Total: 27.93 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.15 Total: 5.62 kcal Atomic # 7 Polarization: -128.25 SS G_CDS: -5.26 Total: -133.51 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: -1.67 Total: -22.40 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.54 0.92 -73.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495782959.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.227 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds