Wall clock time and date at job start Tue Mar 31 2020 20:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47256 * 239.99621 * 2 1 3 5 5 N 1.46502 * 109.46972 * 185.00203 * 4 2 1 6 6 C 1.36932 * 119.99807 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00475 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31628 * 119.99644 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00631 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47150 * 89.99839 * 10 8 6 12 12 H 1.48488 * 109.47494 * 210.00244 * 10 8 6 13 13 H 1.48507 * 109.47014 * 330.00282 * 10 8 6 14 14 N 1.46506 * 109.46757 * 119.99541 * 2 1 3 15 15 C 1.46497 * 120.00073 * 60.27775 * 14 2 1 16 16 C 1.34776 * 119.99844 * 240.00102 * 14 2 1 17 17 O 1.21602 * 120.00118 * 354.48619 * 16 14 2 18 18 C 1.47519 * 120.00023 * 174.48924 * 16 14 2 19 19 C 1.36595 * 125.77539 * 173.93449 * 18 16 14 20 20 N 1.34814 * 106.84330 * 179.89808 * 19 18 16 21 21 C 1.46494 * 126.59334 * 180.14970 * 20 19 18 22 22 C 1.53002 * 109.47385 * 125.26870 * 21 20 19 23 23 H 1.09001 * 110.43510 * 305.70252 * 22 21 20 24 24 C 1.54807 * 110.48912 * 183.15297 * 22 21 20 25 25 C 1.55229 * 101.98557 * 220.51886 * 24 22 21 26 26 O 1.44381 * 103.56791 * 36.88280 * 25 24 22 27 27 C 1.43744 * 106.97542 * 320.01234 * 26 25 24 28 28 N 1.40205 * 106.80889 * 0.35388 * 20 19 18 29 29 N 1.28762 * 108.36845 * 359.77740 * 28 20 19 30 30 H 1.08997 * 109.47387 * 300.00234 * 1 2 3 31 31 H 1.08996 * 109.46863 * 60.00483 * 1 2 3 32 32 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46887 * 305.00057 * 4 2 1 34 34 H 1.08999 * 109.47255 * 65.00161 * 4 2 1 35 35 H 0.96995 * 119.99954 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00216 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47471 * 264.99947 * 15 14 2 38 38 H 1.09006 * 109.46984 * 24.99749 * 15 14 2 39 39 H 1.08998 * 109.47388 * 144.99929 * 15 14 2 40 40 H 1.08001 * 126.57604 * 0.02819 * 19 18 16 41 41 H 1.09003 * 109.46981 * 245.26891 * 21 20 19 42 42 H 1.09000 * 109.47770 * 5.26940 * 21 20 19 43 43 H 1.08994 * 110.90836 * 338.63964 * 24 22 21 44 44 H 1.08998 * 110.90876 * 102.24954 * 24 22 21 45 45 H 1.09000 * 110.52148 * 278.38431 * 25 24 22 46 46 H 1.09000 * 110.77771 * 155.50394 * 25 24 22 47 47 H 1.08997 * 109.87528 * 267.09045 * 27 26 25 48 48 H 1.08995 * 110.00551 * 146.00650 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1839 -1.4380 -2.2070 7 1 3.6470 -1.8433 -3.0519 8 6 5.5674 -1.5372 -2.1516 9 7 6.2220 -1.0429 -1.1221 10 14 6.5003 -2.3721 -3.5379 11 1 6.8621 -1.3653 -4.5678 12 1 7.7359 -2.9945 -2.9987 13 1 5.6444 -3.4203 -4.1496 14 7 2.0183 -0.6906 1.1963 15 6 1.6694 -2.0948 1.4252 16 6 2.7931 -0.0355 2.0834 17 8 3.1698 1.0955 1.8431 18 6 3.1843 -0.6905 3.3460 19 6 4.0546 -0.1870 4.2706 20 7 4.1311 -1.0908 5.2680 21 6 4.9411 -0.9832 6.4838 22 6 4.0441 -1.1557 7.7113 23 1 3.2136 -0.4504 7.6778 24 6 4.8628 -0.9675 9.0115 25 6 4.2852 -2.0852 9.9208 26 8 4.0455 -3.1761 9.0059 27 6 3.5200 -2.6024 7.7972 28 7 3.2899 -2.1557 4.9155 29 7 2.7490 -1.8863 3.7785 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1585 -2.1369 35 1 3.9824 -0.4622 -0.4318 36 1 7.1887 -1.1125 -1.0832 37 1 0.7914 -2.1509 2.0687 38 1 1.4519 -2.5753 0.4712 39 1 2.5051 -2.6032 1.9059 40 1 4.5791 0.7555 4.2145 41 1 5.7059 -1.7598 6.4808 42 1 5.4181 -0.0037 6.5173 43 1 5.9255 -1.1260 8.8284 44 1 4.6865 0.0177 9.4431 45 1 3.3529 -1.7590 10.3818 46 1 5.0079 -2.3755 10.6833 47 1 2.4305 -2.6005 7.8311 48 1 3.8629 -3.1727 6.9340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496198638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:42 Heat of formation + Delta-G solvation = 45.291674 kcal Electronic energy + Delta-G solvation = -29794.656100 eV Core-core repulsion = 25695.147633 eV Total energy + Delta-G solvation = -4099.508467 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.20697 -39.87741 -39.28170 -36.26629 -35.51568 -33.89925 -32.61347 -31.88759 -30.74321 -30.02990 -29.47855 -26.88548 -26.44338 -25.57809 -23.88231 -23.16563 -22.45003 -22.17501 -21.16668 -20.62938 -18.98308 -17.62506 -17.00106 -16.95169 -16.63923 -16.29861 -15.84579 -15.68599 -15.32816 -14.80207 -14.70331 -14.56561 -14.14852 -13.66869 -13.57627 -13.48480 -13.19501 -13.01279 -12.61149 -12.41577 -12.24096 -12.20667 -12.14759 -11.95578 -11.83612 -11.80975 -11.51606 -11.40693 -11.33273 -10.82182 -10.78159 -10.69513 -10.39926 -10.31640 -10.02476 -9.98776 -9.63254 -9.61028 -9.18198 -8.80392 -8.12534 -6.82246 -5.66971 -2.95572 1.17126 1.90557 1.93483 3.33224 3.47993 3.51422 3.52501 3.54335 3.66333 3.87038 3.92267 4.17519 4.36451 4.50339 4.64542 4.65842 4.70135 4.73329 4.81457 5.03897 5.06497 5.19307 5.25965 5.30051 5.35290 5.39011 5.50405 5.52705 5.61671 5.65243 5.67245 5.76727 5.81268 6.02838 6.09582 6.19752 6.27508 6.30185 6.42993 6.47581 6.49456 6.60458 6.81700 7.09825 7.76082 7.78966 8.01587 8.50724 8.56939 9.62254 10.22112 10.57654 11.55272 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.002762 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.209078 B =10133.991979 C =11332.065905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.237 4.237 7 H 0.069 0.931 8 C -0.014 4.014 9 N -0.930 5.930 10 Si 0.906 3.094 11 H -0.291 1.291 12 H -0.293 1.293 13 H -0.283 1.283 14 N -0.581 5.581 15 C 0.090 3.910 16 C 0.604 3.396 17 O -0.539 6.539 18 C -0.085 4.085 19 C 0.095 3.905 20 N -0.366 5.366 21 C 0.131 3.869 22 C -0.136 4.136 23 H 0.092 0.908 24 C -0.147 4.147 25 C 0.046 3.954 26 O -0.377 6.377 27 C 0.052 3.948 28 N -0.076 5.076 29 N -0.196 5.196 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.029 0.971 35 H 0.387 0.613 36 H 0.253 0.747 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.204 0.796 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.062 0.938 48 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.034 1.935 22.321 23.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.312 5.312 15 C -0.053 4.053 16 C 0.389 3.611 17 O -0.416 6.416 18 C -0.224 4.224 19 C -0.061 4.061 20 N -0.151 5.151 21 C 0.009 3.991 22 C -0.155 4.155 23 H 0.110 0.890 24 C -0.185 4.185 25 C -0.031 4.031 26 O -0.296 6.296 27 C -0.025 4.025 28 N -0.056 5.056 29 N -0.070 5.070 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.221 0.779 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.220 0.780 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.293 0.845 22.512 23.679 hybrid contribution 1.264 0.790 -0.809 1.696 sum -6.028 1.636 21.703 22.584 Atomic orbital electron populations 1.22052 0.95021 1.02233 1.01948 1.21435 0.93303 0.98449 0.84508 0.88145 1.21015 0.87140 0.96833 0.93559 1.42305 0.99695 1.70066 1.25139 1.19216 0.89416 1.29204 0.99016 0.91290 1.24740 0.96460 1.01817 0.98028 1.69701 1.06960 1.50985 1.30171 0.86210 0.79524 0.79003 0.81574 1.21808 1.21913 1.20838 1.47442 1.49559 1.12556 1.21662 1.21851 1.01221 0.80873 1.01372 1.16734 0.78122 0.84889 0.81333 1.90797 1.54972 1.18633 1.77153 1.21484 1.05647 0.95021 1.00278 1.23364 0.98155 0.96749 0.87852 1.50422 1.33216 1.14931 1.16545 1.22110 0.92205 1.05249 0.79496 1.22889 0.99005 0.99648 0.94006 0.88967 1.23204 1.00733 1.00518 0.94088 1.23583 0.99971 0.86512 0.93039 1.88921 1.85050 1.30310 1.25320 1.23344 0.98611 0.92022 0.88505 1.81867 1.06428 1.07762 1.09498 1.74816 1.16963 1.11829 1.03361 0.92689 0.91381 0.92262 0.96055 0.95358 0.77868 0.93732 0.93092 0.91075 0.90019 0.77965 0.87901 0.87269 0.89697 0.89482 0.92119 0.88699 0.91953 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.20 37.16 0.34 -1.73 16 2 C 0.13 2.25 2.79 -67.93 -0.19 2.07 16 3 H 0.10 1.98 6.91 -51.93 -0.36 1.62 16 4 C 0.14 2.99 5.51 -4.04 -0.02 2.97 16 5 N -0.73 -19.39 5.43 -59.91 -0.33 -19.72 16 6 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 10 Si 0.91 23.10 29.55 -169.99 -5.02 18.07 16 11 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 N -0.58 -10.57 2.24 -175.16 -0.39 -10.97 16 15 C 0.09 1.47 8.32 59.85 0.50 1.97 16 16 C 0.60 11.61 7.36 -12.48 -0.09 11.51 16 17 O -0.54 -11.66 16.21 5.28 0.09 -11.57 16 18 C -0.09 -1.41 6.63 -83.55 -0.55 -1.96 16 19 C 0.09 1.23 11.28 -16.84 -0.19 1.04 16 20 N -0.37 -4.12 3.69 -61.06 -0.23 -4.34 16 21 C 0.13 0.90 5.70 -4.04 -0.02 0.88 16 22 C -0.14 -0.89 3.27 -89.09 -0.29 -1.18 16 23 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 24 C -0.15 -0.67 6.73 -24.60 -0.17 -0.84 16 25 C 0.05 0.28 7.72 38.34 0.30 0.57 16 26 O -0.38 -3.73 11.52 -35.23 -0.41 -4.13 16 27 C 0.05 0.47 6.60 37.74 0.25 0.72 16 28 N -0.08 -1.07 11.63 60.35 0.70 -0.36 16 29 N -0.20 -3.14 9.05 32.85 0.30 -2.84 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 33 H 0.02 0.44 6.85 -51.93 -0.36 0.08 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.39 11.19 7.06 -40.82 -0.29 10.90 16 36 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.05 0.72 8.13 -51.93 -0.42 0.30 16 38 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 39 H 0.08 1.46 5.88 -51.93 -0.31 1.15 16 40 H 0.20 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.11 0.45 8.08 -51.93 -0.42 0.03 16 43 H 0.08 0.33 7.87 -51.93 -0.41 -0.08 16 44 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 1.08 6.38 -51.93 -0.33 0.75 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -36.56 389.16 -6.49 -43.05 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -7.40 Total: 6.97 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.39 Total: 8.47 kcal Atomic # 7 Polarization: -67.51 SS G_CDS: 0.78 Total: -66.73 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.32 Total: -15.70 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.56 -6.49 -43.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.345 kcal (2) G-P(sol) polarization free energy of solvation -36.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds