Wall clock time and date at job start Tue Mar 31 2020 20:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46801 * 2 1 4 4 C 1.52998 * 109.47256 * 239.99621 * 2 1 3 5 5 N 1.46502 * 109.46972 * 185.00203 * 4 2 1 6 6 C 1.36932 * 119.99807 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00475 * 359.97438 * 6 5 4 8 8 C 1.38815 * 120.00202 * 179.97438 * 6 5 4 9 9 N 1.31628 * 119.99644 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00631 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47150 * 89.99839 * 10 8 6 12 12 H 1.48488 * 109.47494 * 210.00244 * 10 8 6 13 13 H 1.48507 * 109.47014 * 330.00282 * 10 8 6 14 14 N 1.46506 * 109.46757 * 119.99541 * 2 1 3 15 15 C 1.46497 * 120.00073 * 60.27775 * 14 2 1 16 16 C 1.34776 * 119.99844 * 240.00102 * 14 2 1 17 17 O 1.21602 * 120.00118 * 354.48619 * 16 14 2 18 18 C 1.47519 * 120.00023 * 174.48924 * 16 14 2 19 19 C 1.36595 * 125.77539 * 173.93449 * 18 16 14 20 20 N 1.34814 * 106.84330 * 179.89808 * 19 18 16 21 21 C 1.46494 * 126.59334 * 180.14970 * 20 19 18 22 22 C 1.53002 * 109.47385 * 125.26870 * 21 20 19 23 23 H 1.09001 * 110.43510 * 305.70252 * 22 21 20 24 24 C 1.54807 * 110.48912 * 183.15297 * 22 21 20 25 25 C 1.55229 * 101.98557 * 220.51886 * 24 22 21 26 26 O 1.44381 * 103.56791 * 36.88280 * 25 24 22 27 27 C 1.43744 * 106.97542 * 320.01234 * 26 25 24 28 28 N 1.40205 * 106.80889 * 0.35388 * 20 19 18 29 29 N 1.28762 * 108.36845 * 359.77740 * 28 20 19 30 30 H 1.08997 * 109.47387 * 300.00234 * 1 2 3 31 31 H 1.08996 * 109.46863 * 60.00483 * 1 2 3 32 32 H 1.08995 * 109.47173 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.46887 * 305.00057 * 4 2 1 34 34 H 1.08999 * 109.47255 * 65.00161 * 4 2 1 35 35 H 0.96995 * 119.99954 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00216 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.47471 * 264.99947 * 15 14 2 38 38 H 1.09006 * 109.46984 * 24.99749 * 15 14 2 39 39 H 1.08998 * 109.47388 * 144.99929 * 15 14 2 40 40 H 1.08001 * 126.57604 * 0.02819 * 19 18 16 41 41 H 1.09003 * 109.46981 * 245.26891 * 21 20 19 42 42 H 1.09000 * 109.47770 * 5.26940 * 21 20 19 43 43 H 1.08994 * 110.90836 * 338.63964 * 24 22 21 44 44 H 1.08998 * 110.90876 * 102.24954 * 24 22 21 45 45 H 1.09000 * 110.52148 * 278.38431 * 25 24 22 46 46 H 1.09000 * 110.77771 * 155.50394 * 25 24 22 47 47 H 1.08997 * 109.87528 * 267.09045 * 27 26 25 48 48 H 1.08995 * 110.00551 * 146.00650 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5001 -0.8265 -1.1904 6 6 4.1839 -1.4380 -2.2070 7 1 3.6470 -1.8433 -3.0519 8 6 5.5674 -1.5372 -2.1516 9 7 6.2220 -1.0429 -1.1221 10 14 6.5003 -2.3721 -3.5379 11 1 6.8621 -1.3653 -4.5678 12 1 7.7359 -2.9945 -2.9987 13 1 5.6444 -3.4203 -4.1496 14 7 2.0183 -0.6906 1.1963 15 6 1.6694 -2.0948 1.4252 16 6 2.7931 -0.0355 2.0834 17 8 3.1698 1.0955 1.8431 18 6 3.1843 -0.6905 3.3460 19 6 4.0546 -0.1870 4.2706 20 7 4.1311 -1.0908 5.2680 21 6 4.9411 -0.9832 6.4838 22 6 4.0441 -1.1557 7.7113 23 1 3.2136 -0.4504 7.6778 24 6 4.8628 -0.9675 9.0115 25 6 4.2852 -2.0852 9.9208 26 8 4.0455 -3.1761 9.0059 27 6 3.5200 -2.6024 7.7972 28 7 3.2899 -2.1557 4.9155 29 7 2.7490 -1.8863 3.7785 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1585 -2.1369 35 1 3.9824 -0.4622 -0.4318 36 1 7.1887 -1.1125 -1.0832 37 1 0.7914 -2.1509 2.0687 38 1 1.4519 -2.5753 0.4712 39 1 2.5051 -2.6032 1.9059 40 1 4.5791 0.7555 4.2145 41 1 5.7059 -1.7598 6.4808 42 1 5.4181 -0.0037 6.5173 43 1 5.9255 -1.1260 8.8284 44 1 4.6865 0.0177 9.4431 45 1 3.3529 -1.7590 10.3818 46 1 5.0079 -2.3755 10.6833 47 1 2.4305 -2.6005 7.8311 48 1 3.8629 -3.1727 6.9340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496198638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:41 Heat of formation + Delta-G solvation = 18.721101 kcal Electronic energy + Delta-G solvation = -29795.808286 eV Core-core repulsion = 25695.147633 eV Total energy + Delta-G solvation = -4100.660654 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.27594 -40.81816 -40.37053 -37.83046 -36.37079 -35.77134 -33.69562 -33.22845 -32.13607 -31.41725 -30.23724 -27.84082 -27.60158 -27.37964 -25.15052 -24.31946 -23.89830 -22.96073 -22.17322 -21.58966 -20.34497 -19.11694 -18.72587 -17.65763 -17.57786 -17.34860 -16.99122 -16.83167 -16.53764 -16.16293 -15.88218 -15.74420 -15.33928 -15.14088 -15.07756 -14.60868 -14.19788 -14.00755 -13.83532 -13.75665 -13.65995 -13.42401 -13.24413 -13.12796 -12.98919 -12.78873 -12.69147 -12.48942 -12.34443 -12.23812 -12.14093 -11.91445 -11.81727 -11.75875 -11.70122 -11.26328 -11.07867 -10.92800 -10.67256 -10.32770 -9.54527 -8.97818 -7.92205 -5.21629 0.14297 0.66699 1.06738 1.45072 1.47773 1.55822 1.99264 2.31003 2.56019 2.96101 3.15249 3.24324 3.40070 3.40283 3.65572 3.69439 3.88364 3.92711 4.00720 4.12488 4.15954 4.23896 4.31522 4.32569 4.36261 4.43540 4.49423 4.49964 4.63182 4.79287 4.79826 4.84409 4.85883 4.88770 4.92052 4.97462 4.98948 5.10862 5.12316 5.18735 5.33884 5.43361 5.48861 5.68383 5.89736 6.27763 6.38687 6.87382 7.16402 7.34147 8.11235 8.34669 9.31047 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013354 B = 0.002762 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.209078 B =10133.991979 C =11332.065905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.742 5.742 6 C -0.242 4.242 7 H 0.078 0.922 8 C -0.079 4.079 9 N -0.969 5.969 10 Si 0.975 3.025 11 H -0.287 1.287 12 H -0.297 1.297 13 H -0.268 1.268 14 N -0.585 5.585 15 C 0.097 3.903 16 C 0.595 3.405 17 O -0.575 6.575 18 C -0.120 4.120 19 C 0.108 3.892 20 N -0.349 5.349 21 C 0.120 3.880 22 C -0.128 4.128 23 H 0.095 0.905 24 C -0.135 4.135 25 C 0.035 3.965 26 O -0.405 6.405 27 C 0.050 3.950 28 N -0.086 5.086 29 N -0.212 5.212 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.372 0.628 36 H 0.248 0.752 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.230 0.770 41 H 0.109 0.891 42 H 0.149 0.851 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.109 0.891 47 H 0.051 0.949 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 2.197 23.114 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.385 5.385 6 C -0.374 4.374 7 H 0.096 0.904 8 C -0.271 4.271 9 N -0.620 5.620 10 Si 0.804 3.196 11 H -0.214 1.214 12 H -0.224 1.224 13 H -0.193 1.193 14 N -0.315 5.315 15 C -0.045 4.045 16 C 0.382 3.618 17 O -0.455 6.455 18 C -0.259 4.259 19 C -0.049 4.049 20 N -0.134 5.134 21 C 0.001 3.999 22 C -0.148 4.148 23 H 0.113 0.887 24 C -0.173 4.173 25 C -0.041 4.041 26 O -0.325 6.325 27 C -0.026 4.026 28 N -0.066 5.066 29 N -0.086 5.086 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.204 0.796 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.247 0.753 41 H 0.127 0.873 42 H 0.166 0.834 43 H 0.115 0.885 44 H 0.129 0.871 45 H 0.084 0.916 46 H 0.127 0.873 47 H 0.069 0.931 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.573 1.070 23.312 24.534 hybrid contribution 1.310 0.688 -0.947 1.757 sum -6.262 1.759 22.365 23.291 Atomic orbital electron populations 1.21968 0.91144 1.03558 1.03306 1.21384 0.96119 0.96587 0.83261 0.90509 1.21231 0.84165 0.97832 0.95456 1.42524 1.01996 1.69805 1.24148 1.19661 0.89970 1.28282 0.99481 0.90377 1.25609 0.97553 1.03267 1.00660 1.69882 1.06770 1.52933 1.32369 0.85111 0.77851 0.78125 0.78487 1.21448 1.22392 1.19250 1.47586 1.49311 1.13143 1.21461 1.21833 1.01421 0.79748 1.01523 1.17151 0.77659 0.84699 0.82268 1.90754 1.56414 1.20120 1.78211 1.21376 1.08021 0.96046 1.00459 1.23733 0.96776 0.97355 0.87050 1.50697 1.32165 1.13422 1.17076 1.22629 0.91849 1.07743 0.77684 1.22833 0.99361 0.97717 0.94873 0.88699 1.23202 1.00829 1.01066 0.92215 1.23851 1.00882 0.86227 0.93101 1.88889 1.85148 1.32390 1.26059 1.23268 0.97986 0.93526 0.87869 1.81800 1.07047 1.08818 1.08965 1.74778 1.17857 1.11866 1.04089 0.91784 0.89592 0.90895 0.94848 0.94618 0.79610 0.94301 0.90733 0.91128 0.91737 0.75336 0.87307 0.83368 0.88543 0.87096 0.91580 0.87324 0.93106 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.20 71.98 0.66 -2.88 16 2 C 0.13 4.62 2.79 44.99 0.13 4.75 16 3 H 0.08 3.11 6.91 -2.39 -0.02 3.10 16 4 C 0.14 5.81 5.51 86.38 0.48 6.29 16 5 N -0.74 -40.11 5.43 -343.46 -1.87 -41.98 16 6 C -0.24 -14.06 9.99 84.03 0.84 -13.22 16 7 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 8 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 9 N -0.97 -62.17 13.06 21.65 0.28 -61.89 16 10 Si 0.98 47.79 29.55 68.60 2.03 49.82 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 13 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 14 N -0.58 -21.51 2.24 -826.35 -1.85 -23.37 16 15 C 0.10 3.18 8.32 127.77 1.06 4.24 16 16 C 0.59 23.49 7.36 86.69 0.64 24.13 16 17 O -0.58 -25.76 16.21 -4.04 -0.07 -25.83 16 18 C -0.12 -4.01 6.63 40.81 0.27 -3.74 16 19 C 0.11 2.73 11.28 83.85 0.95 3.68 16 20 N -0.35 -7.45 3.69 -347.10 -1.28 -8.74 16 21 C 0.12 1.37 5.70 86.38 0.49 1.86 16 22 C -0.13 -1.42 3.27 -9.80 -0.03 -1.45 16 23 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 24 C -0.14 -0.82 6.73 31.98 0.22 -0.61 16 25 C 0.04 0.37 7.72 72.75 0.56 0.93 16 26 O -0.41 -7.85 11.52 -148.98 -1.72 -9.57 16 27 C 0.05 0.91 6.60 72.36 0.48 1.39 16 28 N -0.09 -2.43 11.63 37.02 0.43 -2.00 16 29 N -0.21 -6.90 9.05 -50.00 -0.45 -7.35 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.64 7.68 -2.39 -0.02 1.62 16 33 H 0.03 1.33 6.85 -2.39 -0.02 1.31 16 34 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.37 22.18 7.06 -92.71 -0.65 21.52 16 36 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.07 2.05 8.13 -2.39 -0.02 2.03 16 38 H 0.07 2.26 6.52 -2.38 -0.02 2.25 16 39 H 0.06 2.36 5.88 -2.39 -0.01 2.35 16 40 H 0.23 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.15 0.61 8.08 -2.39 -0.02 0.59 16 43 H 0.10 0.41 7.87 -2.39 -0.02 0.39 16 44 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.08 1.78 6.38 -2.39 -0.02 1.76 16 Total: -1.00 -81.84 389.16 3.03 -78.81 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.32 Total: 30.99 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: 7.20 Total: 21.10 kcal Atomic # 7 Polarization: -140.58 SS G_CDS: -4.74 Total: -145.32 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.78 Total: -35.39 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -81.84 3.03 -78.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.532 kcal (2) G-P(sol) polarization free energy of solvation -81.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds