Wall clock time and date at job start Tue Mar 31 2020 20:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47653 * 2 1 4 4 C 1.53006 * 109.46578 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.46673 * 174.99920 * 4 2 1 6 6 C 1.36936 * 119.99688 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00197 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99927 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00027 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46949 * 89.99747 * 10 8 6 12 12 H 1.48496 * 109.47106 * 210.00248 * 10 8 6 13 13 H 1.48502 * 109.46938 * 330.00427 * 10 8 6 14 14 N 1.46494 * 109.47185 * 239.99584 * 2 1 3 15 15 C 1.46508 * 119.99949 * 299.72511 * 14 2 1 16 16 C 1.34777 * 120.00300 * 120.00367 * 14 2 1 17 17 O 1.21591 * 119.99574 * 356.09836 * 16 14 2 18 18 C 1.47517 * 120.00139 * 176.09565 * 16 14 2 19 19 C 1.36606 * 125.76923 * 185.96033 * 18 16 14 20 20 N 1.34812 * 106.83652 * 179.97438 * 19 18 16 21 21 C 1.46502 * 126.59264 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47065 * 124.99899 * 21 20 19 23 23 H 1.09000 * 110.45880 * 52.40090 * 22 21 20 24 24 C 1.54514 * 110.51085 * 175.00384 * 22 21 20 25 25 C 1.54476 * 104.06173 * 118.64743 * 24 22 21 26 26 O 1.44419 * 104.80502 * 23.97708 * 25 24 22 27 27 C 1.44427 * 105.27639 * 319.48713 * 26 25 24 28 28 N 1.40203 * 106.81301 * 0.02562 * 20 19 18 29 29 N 1.28760 * 108.36923 * 359.74762 * 28 20 19 30 30 H 1.09002 * 109.47086 * 60.00277 * 1 2 3 31 31 H 1.08998 * 109.47653 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47232 * 300.00191 * 1 2 3 33 33 H 1.08998 * 109.46992 * 294.99479 * 4 2 1 34 34 H 1.08991 * 109.47322 * 54.99964 * 4 2 1 35 35 H 0.96996 * 120.00446 * 0.02562 * 5 4 2 36 36 H 0.96998 * 119.99898 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.46712 * 95.72734 * 15 14 2 38 38 H 1.08997 * 109.47025 * 215.72335 * 15 14 2 39 39 H 1.08996 * 109.46976 * 335.73317 * 15 14 2 40 40 H 1.07992 * 126.57436 * 359.95739 * 19 18 16 41 41 H 1.08998 * 109.47293 * 245.00259 * 21 20 19 42 42 H 1.09007 * 109.46934 * 4.99893 * 21 20 19 43 43 H 1.09000 * 110.50698 * 237.29138 * 24 22 21 44 44 H 1.08999 * 110.51155 * 359.97438 * 24 22 21 45 45 H 1.09003 * 110.37059 * 142.81557 * 25 24 22 46 46 H 1.08998 * 110.36951 * 265.14133 * 25 24 22 47 47 H 1.08997 * 110.37200 * 281.68126 * 27 26 25 48 48 H 1.08997 * 110.36694 * 159.34197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0398 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.1837 -1.4380 2.2074 7 1 3.6467 -1.8424 3.0526 8 6 5.5671 -1.5381 2.1516 9 7 6.2216 -1.0448 1.1217 10 14 6.4999 -2.3730 3.5381 11 1 6.6313 -3.8225 3.2437 12 1 7.8505 -1.7681 3.6606 13 1 5.7590 -2.1919 4.8123 14 7 2.0183 -0.6907 -1.1961 15 6 1.6693 -2.0951 -1.4248 16 6 2.7932 -0.0358 -2.0833 17 8 3.0286 1.1470 -1.9281 18 6 3.3558 -0.7540 -3.2425 19 6 4.2428 -0.2410 -4.1459 20 7 4.4997 -1.2179 -5.0388 21 6 5.3967 -1.1315 -6.1939 22 6 6.4275 -2.2600 -6.1247 23 1 5.9311 -3.2221 -5.9981 24 6 7.3076 -2.2679 -7.3946 25 6 8.7366 -2.0205 -6.8624 26 8 8.7003 -2.4630 -5.4881 27 6 7.4288 -2.0087 -4.9755 28 7 3.7434 -2.3324 -4.6494 29 7 3.0862 -2.0252 -3.5856 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7515 -0.1582 2.1370 34 1 1.6052 -1.7197 1.2953 35 1 3.9824 -0.4623 0.4321 36 1 7.1883 -1.1151 1.0825 37 1 0.7991 -2.1513 -2.0788 38 1 2.5099 -2.6066 -1.8936 39 1 1.4392 -2.5720 -0.4721 40 1 4.6582 0.7558 -4.1451 41 1 4.8167 -1.2249 -7.1121 42 1 5.9096 -0.1697 -6.1844 43 1 7.2482 -3.2347 -7.8944 44 1 7.0081 -1.4681 -8.0719 45 1 9.4597 -2.6057 -7.4306 46 1 8.9820 -0.9598 -6.9132 47 1 7.4737 -0.9461 -4.7369 48 1 7.1473 -2.5849 -4.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496198643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:45 Heat of formation + Delta-G solvation = 45.620145 kcal Electronic energy + Delta-G solvation = -30128.522263 eV Core-core repulsion = 26029.028040 eV Total energy + Delta-G solvation = -4099.494224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17261 -39.81498 -39.27569 -36.27322 -35.47985 -33.89437 -32.56690 -31.87402 -30.63382 -29.98305 -29.49777 -26.78259 -26.43987 -25.56929 -23.74832 -23.40297 -22.44356 -22.17061 -21.14755 -20.38585 -18.98505 -17.73032 -17.00219 -16.76056 -16.38171 -16.25326 -15.80095 -15.69515 -15.42729 -14.89829 -14.60992 -14.59774 -14.11366 -13.71909 -13.55224 -13.36486 -13.14452 -13.02708 -12.63514 -12.36151 -12.25407 -12.21190 -12.15875 -11.90284 -11.80809 -11.76420 -11.51375 -11.41059 -11.05759 -10.79321 -10.71262 -10.65725 -10.36725 -10.24848 -10.09453 -9.98664 -9.63591 -9.60067 -9.14771 -8.80434 -8.11921 -6.82752 -5.67406 -2.95866 1.20284 1.93905 1.96598 3.32783 3.48519 3.53147 3.55130 3.58445 3.68915 3.93792 4.08205 4.35514 4.36982 4.47415 4.63527 4.65255 4.76656 4.83945 4.93181 4.95741 5.07976 5.22651 5.30727 5.34481 5.41678 5.50937 5.53165 5.60855 5.62269 5.67830 5.69725 5.74936 5.82161 6.02396 6.09999 6.19575 6.27482 6.33595 6.44949 6.46778 6.57525 6.60899 6.82221 7.10604 7.76217 7.79289 8.04992 8.50312 8.57005 9.61958 10.21071 10.56453 11.54969 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009091 B = 0.003782 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.096598 B = 7401.899947 C = 9806.744550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.143 3.857 5 N -0.727 5.727 6 C -0.238 4.238 7 H 0.069 0.931 8 C -0.013 4.013 9 N -0.930 5.930 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.580 5.580 15 C 0.078 3.922 16 C 0.605 3.395 17 O -0.544 6.544 18 C -0.083 4.083 19 C 0.092 3.908 20 N -0.364 5.364 21 C 0.133 3.867 22 C -0.138 4.138 23 H 0.104 0.896 24 C -0.146 4.146 25 C 0.041 3.959 26 O -0.369 6.369 27 C 0.049 3.951 28 N -0.072 5.072 29 N -0.197 5.197 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.022 0.978 35 H 0.385 0.615 36 H 0.253 0.747 37 H 0.047 0.953 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.203 0.797 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.063 0.937 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 0.573 -20.509 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.369 4.369 7 H 0.087 0.913 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.310 5.310 15 C -0.065 4.065 16 C 0.391 3.609 17 O -0.421 6.421 18 C -0.222 4.222 19 C -0.064 4.064 20 N -0.150 5.150 21 C 0.012 3.988 22 C -0.157 4.157 23 H 0.122 0.878 24 C -0.184 4.184 25 C -0.036 4.036 26 O -0.288 6.288 27 C -0.028 4.028 28 N -0.052 5.052 29 N -0.071 5.071 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.220 0.780 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.219 0.781 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.850 -0.448 -20.497 20.860 hybrid contribution 0.984 0.648 0.556 1.303 sum -2.867 0.200 -19.941 20.147 Atomic orbital electron populations 1.22046 0.95036 1.02175 1.01969 1.21440 0.93426 0.98437 0.84422 0.88126 1.21025 0.87108 0.96878 0.93556 1.42285 0.99687 1.70084 1.25112 1.19211 0.89418 1.29270 0.99012 0.91287 1.24721 0.96424 1.01719 0.98014 1.69684 1.07004 1.50901 1.30251 0.86222 0.79440 0.79036 0.81694 1.21838 1.21860 1.20801 1.47454 1.49193 1.12687 1.21698 1.22070 1.01769 0.81116 1.01542 1.16732 0.78000 0.85547 0.80665 1.90775 1.60761 1.14814 1.75723 1.21449 1.06393 0.92331 1.01986 1.23328 0.97215 0.96262 0.89555 1.50405 1.32644 1.10542 1.21371 1.22096 0.90047 1.00815 0.85874 1.22924 0.96151 1.00158 0.96483 0.87783 1.22951 0.94930 1.03694 0.96836 1.23445 0.96740 0.99915 0.83455 1.89205 1.36652 1.77923 1.24979 1.23537 0.82208 1.00257 0.96780 1.81930 1.06948 1.06560 1.09774 1.74752 1.15668 1.11652 1.05005 0.92652 0.92310 0.91410 0.95306 0.96023 0.78042 0.93708 0.93425 0.88589 0.91112 0.78061 0.88064 0.87575 0.89781 0.89953 0.88881 0.92066 0.91850 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.20 37.16 0.34 -1.75 16 2 C 0.13 2.26 2.79 -67.93 -0.19 2.07 16 3 H 0.10 2.00 6.90 -51.93 -0.36 1.64 16 4 C 0.14 2.98 5.52 -4.04 -0.02 2.96 16 5 N -0.73 -19.30 5.43 -59.90 -0.33 -19.63 16 6 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 7 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 8 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -29.12 13.06 55.49 0.72 -28.39 16 10 Si 0.90 23.12 29.55 -169.99 -5.02 18.10 16 11 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 13 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 14 N -0.58 -10.58 2.24 -175.17 -0.39 -10.98 16 15 C 0.08 1.29 8.67 59.85 0.52 1.80 16 16 C 0.60 11.66 7.37 -12.48 -0.09 11.57 16 17 O -0.54 -11.62 16.20 5.29 0.09 -11.53 16 18 C -0.08 -1.39 6.70 -83.55 -0.56 -1.95 16 19 C 0.09 1.22 11.28 -16.83 -0.19 1.03 16 20 N -0.36 -4.18 3.58 -61.06 -0.22 -4.40 16 21 C 0.13 0.92 5.69 -4.04 -0.02 0.90 16 22 C -0.14 -1.11 3.24 -89.05 -0.29 -1.40 16 23 H 0.10 1.00 8.06 -51.93 -0.42 0.58 16 24 C -0.15 -0.83 6.74 -25.16 -0.17 -1.00 16 25 C 0.04 0.31 7.63 37.93 0.29 0.60 16 26 O -0.37 -4.47 11.65 -35.23 -0.41 -4.88 16 27 C 0.05 0.55 7.08 37.93 0.27 0.81 16 28 N -0.07 -1.06 13.57 60.35 0.82 -0.24 16 29 N -0.20 -3.25 8.78 32.85 0.29 -2.96 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.02 0.45 6.85 -51.93 -0.36 0.09 16 35 H 0.39 11.07 7.07 -40.82 -0.29 10.78 16 36 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.10 1.72 5.22 -51.93 -0.27 1.45 16 39 H 0.07 1.16 6.52 -51.93 -0.34 0.82 16 40 H 0.20 2.11 8.06 -52.49 -0.42 1.68 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.48 7.90 -51.92 -0.41 0.07 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.27 7.73 -51.93 -0.40 -0.13 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.66 7.74 -51.93 -0.40 0.26 16 48 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 391.96 15.07 5.91 5.91 Total: -1.00 -36.56 391.96 -6.33 -42.89 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -7.42 Total: 7.97 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -0.36 Total: 8.15 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: 0.89 Total: -66.60 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.32 Total: -16.41 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -36.56 -6.33 -42.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.511 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds