Wall clock time and date at job start Tue Mar 31 2020 20:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47653 * 2 1 4 4 C 1.53006 * 109.46578 * 119.99871 * 2 1 3 5 5 N 1.46506 * 109.46673 * 174.99920 * 4 2 1 6 6 C 1.36936 * 119.99688 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00197 * 359.97438 * 6 5 4 8 8 C 1.38819 * 119.99831 * 179.97438 * 6 5 4 9 9 N 1.31617 * 119.99927 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00027 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46949 * 89.99747 * 10 8 6 12 12 H 1.48496 * 109.47106 * 210.00248 * 10 8 6 13 13 H 1.48502 * 109.46938 * 330.00427 * 10 8 6 14 14 N 1.46494 * 109.47185 * 239.99584 * 2 1 3 15 15 C 1.46508 * 119.99949 * 299.72511 * 14 2 1 16 16 C 1.34777 * 120.00300 * 120.00367 * 14 2 1 17 17 O 1.21591 * 119.99574 * 356.09836 * 16 14 2 18 18 C 1.47517 * 120.00139 * 176.09565 * 16 14 2 19 19 C 1.36606 * 125.76923 * 185.96033 * 18 16 14 20 20 N 1.34812 * 106.83652 * 179.97438 * 19 18 16 21 21 C 1.46502 * 126.59264 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47065 * 124.99899 * 21 20 19 23 23 H 1.09000 * 110.45880 * 52.40090 * 22 21 20 24 24 C 1.54514 * 110.51085 * 175.00384 * 22 21 20 25 25 C 1.54476 * 104.06173 * 118.64743 * 24 22 21 26 26 O 1.44419 * 104.80502 * 23.97708 * 25 24 22 27 27 C 1.44427 * 105.27639 * 319.48713 * 26 25 24 28 28 N 1.40203 * 106.81301 * 0.02562 * 20 19 18 29 29 N 1.28760 * 108.36923 * 359.74762 * 28 20 19 30 30 H 1.09002 * 109.47086 * 60.00277 * 1 2 3 31 31 H 1.08998 * 109.47653 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47232 * 300.00191 * 1 2 3 33 33 H 1.08998 * 109.46992 * 294.99479 * 4 2 1 34 34 H 1.08991 * 109.47322 * 54.99964 * 4 2 1 35 35 H 0.96996 * 120.00446 * 0.02562 * 5 4 2 36 36 H 0.96998 * 119.99898 * 180.02562 * 9 8 6 37 37 H 1.09007 * 109.46712 * 95.72734 * 15 14 2 38 38 H 1.08997 * 109.47025 * 215.72335 * 15 14 2 39 39 H 1.08996 * 109.46976 * 335.73317 * 15 14 2 40 40 H 1.07992 * 126.57436 * 359.95739 * 19 18 16 41 41 H 1.08998 * 109.47293 * 245.00259 * 21 20 19 42 42 H 1.09007 * 109.46934 * 4.99893 * 21 20 19 43 43 H 1.09000 * 110.50698 * 237.29138 * 24 22 21 44 44 H 1.08999 * 110.51155 * 359.97438 * 24 22 21 45 45 H 1.09003 * 110.37059 * 142.81557 * 25 24 22 46 46 H 1.08998 * 110.36951 * 265.14133 * 25 24 22 47 47 H 1.08997 * 110.37200 * 281.68126 * 27 26 25 48 48 H 1.08997 * 110.36694 * 159.34197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0398 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.1837 -1.4380 2.2074 7 1 3.6467 -1.8424 3.0526 8 6 5.5671 -1.5381 2.1516 9 7 6.2216 -1.0448 1.1217 10 14 6.4999 -2.3730 3.5381 11 1 6.6313 -3.8225 3.2437 12 1 7.8505 -1.7681 3.6606 13 1 5.7590 -2.1919 4.8123 14 7 2.0183 -0.6907 -1.1961 15 6 1.6693 -2.0951 -1.4248 16 6 2.7932 -0.0358 -2.0833 17 8 3.0286 1.1470 -1.9281 18 6 3.3558 -0.7540 -3.2425 19 6 4.2428 -0.2410 -4.1459 20 7 4.4997 -1.2179 -5.0388 21 6 5.3967 -1.1315 -6.1939 22 6 6.4275 -2.2600 -6.1247 23 1 5.9311 -3.2221 -5.9981 24 6 7.3076 -2.2679 -7.3946 25 6 8.7366 -2.0205 -6.8624 26 8 8.7003 -2.4630 -5.4881 27 6 7.4288 -2.0087 -4.9755 28 7 3.7434 -2.3324 -4.6494 29 7 3.0862 -2.0252 -3.5856 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.7515 -0.1582 2.1370 34 1 1.6052 -1.7197 1.2953 35 1 3.9824 -0.4623 0.4321 36 1 7.1883 -1.1151 1.0825 37 1 0.7991 -2.1513 -2.0788 38 1 2.5099 -2.6066 -1.8936 39 1 1.4392 -2.5720 -0.4721 40 1 4.6582 0.7558 -4.1451 41 1 4.8167 -1.2249 -7.1121 42 1 5.9096 -0.1697 -6.1844 43 1 7.2482 -3.2347 -7.8944 44 1 7.0081 -1.4681 -8.0719 45 1 9.4597 -2.6057 -7.4306 46 1 8.9820 -0.9598 -6.9132 47 1 7.4737 -0.9461 -4.7369 48 1 7.1473 -2.5849 -4.0942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496198643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:44 Heat of formation + Delta-G solvation = 18.770796 kcal Electronic energy + Delta-G solvation = -30129.686539 eV Core-core repulsion = 26029.028040 eV Total energy + Delta-G solvation = -4100.658499 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.26400 -40.82366 -40.43163 -37.84115 -36.38742 -35.77304 -33.72007 -33.23549 -32.13754 -31.35362 -30.29789 -27.83771 -27.57291 -27.37994 -25.09091 -24.34660 -24.13074 -23.05811 -22.24067 -21.36777 -20.33348 -19.11805 -18.80215 -17.76586 -17.50131 -17.33677 -16.91708 -16.63051 -16.52381 -16.35623 -16.09181 -15.63819 -15.36948 -15.20999 -15.05652 -14.83728 -14.05892 -14.03957 -13.82363 -13.75674 -13.65902 -13.56183 -13.25854 -12.98757 -12.98573 -12.86842 -12.78784 -12.51735 -12.42712 -12.23888 -12.13567 -11.92912 -11.76768 -11.69451 -11.59423 -11.23597 -11.06087 -10.93381 -10.85700 -10.31202 -9.53770 -8.98823 -7.93508 -5.22537 0.15276 0.67370 1.09207 1.44258 1.46590 1.54936 1.98025 2.32576 2.55167 2.89266 3.16197 3.25665 3.39786 3.44674 3.66220 3.72303 3.84925 3.92697 4.00752 4.06230 4.11723 4.17616 4.29000 4.33114 4.37178 4.37793 4.47412 4.49562 4.61722 4.67517 4.78270 4.79845 4.85559 4.86228 4.91652 4.97702 5.00284 5.10706 5.14103 5.25523 5.34004 5.45741 5.48320 5.69273 5.76801 6.26225 6.38362 6.87939 7.16233 7.33056 8.09675 8.33065 9.29652 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009091 B = 0.003782 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3079.096598 B = 7401.899947 C = 9806.744550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.140 3.860 5 N -0.741 5.741 6 C -0.242 4.242 7 H 0.078 0.922 8 C -0.076 4.076 9 N -0.968 5.968 10 Si 0.973 3.027 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.266 1.266 14 N -0.583 5.583 15 C 0.084 3.916 16 C 0.595 3.405 17 O -0.577 6.577 18 C -0.118 4.118 19 C 0.105 3.895 20 N -0.346 5.346 21 C 0.123 3.877 22 C -0.130 4.130 23 H 0.084 0.916 24 C -0.132 4.132 25 C 0.031 3.969 26 O -0.406 6.406 27 C 0.045 3.955 28 N -0.086 5.086 29 N -0.215 5.215 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.371 0.629 36 H 0.247 0.753 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.229 0.771 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.089 0.911 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 0.700 -22.041 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.384 5.384 6 C -0.374 4.374 7 H 0.096 0.904 8 C -0.268 4.268 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.191 1.191 14 N -0.313 5.313 15 C -0.059 4.059 16 C 0.383 3.617 17 O -0.457 6.457 18 C -0.258 4.258 19 C -0.053 4.053 20 N -0.131 5.131 21 C 0.004 3.996 22 C -0.149 4.149 23 H 0.103 0.897 24 C -0.170 4.170 25 C -0.045 4.045 26 O -0.325 6.325 27 C -0.032 4.032 28 N -0.066 5.066 29 N -0.088 5.088 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.202 0.798 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.153 0.847 42 H 0.158 0.842 43 H 0.108 0.892 44 H 0.137 0.863 45 H 0.122 0.878 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.671 -0.362 -22.034 22.527 hybrid contribution 1.266 0.598 0.969 1.703 sum -3.405 0.236 -21.065 21.340 Atomic orbital electron populations 1.21963 0.91187 1.03514 1.03296 1.21383 0.96231 0.96559 0.83203 0.90511 1.21239 0.84133 0.97863 0.95438 1.42500 1.01976 1.69805 1.24108 1.19653 0.89942 1.28287 0.99483 0.90366 1.25566 0.97509 1.03157 1.00580 1.69866 1.06732 1.52883 1.32424 0.85148 0.77677 0.77660 0.79334 1.21603 1.22418 1.19084 1.47595 1.48984 1.13283 1.21462 1.22066 1.02051 0.79990 1.01749 1.17137 0.77715 0.85459 0.81421 1.90731 1.62008 1.16124 1.76817 1.21392 1.08629 0.93031 1.02698 1.23708 0.95738 0.97279 0.88540 1.50686 1.31764 1.09050 1.21612 1.22673 0.89623 1.01988 0.85275 1.22811 0.95850 0.99714 0.96561 0.89715 1.22934 0.92807 1.05492 0.95797 1.23759 0.98380 1.01021 0.81337 1.89162 1.37047 1.78625 1.27713 1.23488 0.83265 0.99661 0.96797 1.81819 1.07458 1.07809 1.09503 1.74711 1.16667 1.11659 1.05762 0.91804 0.90906 0.89623 0.94543 0.94837 0.79762 0.94381 0.90912 0.90243 0.91208 0.75418 0.84690 0.84153 0.89205 0.86343 0.87793 0.90547 0.91284 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.20 71.98 0.66 -2.92 16 2 C 0.13 4.64 2.79 44.99 0.13 4.77 16 3 H 0.08 3.13 6.90 -2.39 -0.02 3.11 16 4 C 0.14 5.83 5.52 86.38 0.48 6.30 16 5 N -0.74 -40.06 5.43 -343.44 -1.87 -41.92 16 6 C -0.24 -14.07 9.99 84.04 0.84 -13.23 16 7 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 8 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 9 N -0.97 -62.40 13.06 21.65 0.28 -62.12 16 10 Si 0.97 48.13 29.55 68.60 2.03 50.16 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 N -0.58 -21.57 2.24 -826.37 -1.85 -23.43 16 15 C 0.08 2.76 8.67 127.77 1.11 3.87 16 16 C 0.60 23.64 7.37 86.69 0.64 24.28 16 17 O -0.58 -25.53 16.20 -4.00 -0.06 -25.59 16 18 C -0.12 -4.06 6.70 40.82 0.27 -3.78 16 19 C 0.10 2.71 11.28 83.85 0.95 3.66 16 20 N -0.35 -7.51 3.58 -347.09 -1.24 -8.75 16 21 C 0.12 1.33 5.69 86.38 0.49 1.82 16 22 C -0.13 -1.91 3.24 -9.78 -0.03 -1.94 16 23 H 0.08 1.60 8.06 -2.39 -0.02 1.58 16 24 C -0.13 -1.10 6.74 31.61 0.21 -0.89 16 25 C 0.03 0.40 7.63 72.48 0.55 0.96 16 26 O -0.41 -9.94 11.65 -148.98 -1.74 -11.68 16 27 C 0.04 1.02 7.08 72.48 0.51 1.53 16 28 N -0.09 -2.50 13.57 37.02 0.50 -2.00 16 29 N -0.21 -7.20 8.78 -50.00 -0.44 -7.64 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 1.65 7.68 -2.39 -0.02 1.63 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 1.33 6.85 -2.39 -0.02 1.32 16 35 H 0.37 22.06 7.07 -92.71 -0.66 21.40 16 36 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.08 2.94 5.22 -2.39 -0.01 2.92 16 39 H 0.07 2.25 6.52 -2.39 -0.02 2.24 16 40 H 0.23 4.45 8.06 -2.91 -0.02 4.42 16 41 H 0.14 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.14 0.66 7.90 -2.38 -0.02 0.64 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.12 0.18 7.73 -2.39 -0.02 0.16 16 45 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.07 1.44 7.74 -2.39 -0.02 1.42 16 48 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -83.45 391.96 3.20 -80.25 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.32 Total: 32.40 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.28 Total: 20.33 kcal Atomic # 7 Polarization: -141.25 SS G_CDS: -4.62 Total: -145.87 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.80 Total: -37.27 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -83.45 3.20 -80.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.019 kcal (2) G-P(sol) polarization free energy of solvation -83.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds