Wall clock time and date at job start Tue Mar 31 2020 20:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47260 * 2 1 4 4 C 1.52998 * 109.47177 * 120.00034 * 2 1 3 5 5 N 1.46496 * 109.47610 * 174.99728 * 4 2 1 6 6 C 1.36937 * 120.00122 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00258 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31627 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99949 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47344 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47160 * 120.00062 * 10 8 6 13 13 H 1.48501 * 109.47357 * 239.99993 * 10 8 6 14 14 N 1.46501 * 109.46969 * 239.99676 * 2 1 3 15 15 C 1.46497 * 120.00412 * 300.00148 * 14 2 1 16 16 C 1.34776 * 119.99557 * 120.00551 * 14 2 1 17 17 O 1.21589 * 120.00728 * 3.47251 * 16 14 2 18 18 C 1.47527 * 119.99904 * 183.47722 * 16 14 2 19 19 C 1.36599 * 125.77527 * 173.17509 * 18 16 14 20 20 N 1.34812 * 106.83933 * 180.17081 * 19 18 16 21 21 C 1.46501 * 126.58854 * 179.90496 * 20 19 18 22 22 C 1.53008 * 109.46580 * 124.71444 * 21 20 19 23 23 H 1.09007 * 110.80026 * 302.81999 * 22 21 20 24 24 C 1.54810 * 110.93299 * 179.17586 * 22 21 20 25 25 C 1.54100 * 104.18794 * 220.90364 * 24 22 21 26 26 O 1.43890 * 107.37380 * 358.10388 * 25 24 22 27 27 C 1.44378 * 106.89804 * 26.27221 * 26 25 24 28 28 N 1.40209 * 106.81423 * 359.64590 * 20 19 18 29 29 N 1.28761 * 108.36668 * 0.22511 * 28 20 19 30 30 H 1.09006 * 109.47432 * 300.00196 * 1 2 3 31 31 H 1.09004 * 109.47211 * 59.99650 * 1 2 3 32 32 H 1.09001 * 109.47724 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47075 * 294.99932 * 4 2 1 34 34 H 1.09001 * 109.47190 * 54.99733 * 4 2 1 35 35 H 0.96998 * 119.99489 * 0.02562 * 5 4 2 36 36 H 0.96995 * 119.99665 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47150 * 263.96410 * 15 14 2 38 38 H 1.08999 * 109.46649 * 23.96308 * 15 14 2 39 39 H 1.08998 * 109.46949 * 143.96044 * 15 14 2 40 40 H 1.07998 * 126.57480 * 0.05983 * 19 18 16 41 41 H 1.08993 * 109.47658 * 4.71395 * 21 20 19 42 42 H 1.09003 * 109.47045 * 244.70891 * 21 20 19 43 43 H 1.09001 * 110.49421 * 339.57898 * 24 22 21 44 44 H 1.08997 * 110.48980 * 102.10033 * 24 22 21 45 45 H 1.08997 * 109.87891 * 117.38923 * 25 24 22 46 46 H 1.09000 * 109.88257 * 238.40276 * 25 24 22 47 47 H 1.09005 * 110.61876 * 201.58143 * 27 26 25 48 48 H 1.09007 * 110.62234 * 78.73915 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1837 -1.4380 2.2073 7 1 3.6467 -1.8424 3.0525 8 6 5.5672 -1.5373 2.1519 9 7 6.2218 -1.0430 1.1225 10 14 6.5000 -2.3708 3.5391 11 1 5.5396 -2.8375 4.5712 12 1 7.2518 -3.5332 3.0016 13 1 7.4502 -1.4051 4.1471 14 7 2.0182 -0.6907 -1.1961 15 6 1.6643 -2.0932 -1.4280 16 6 2.7932 -0.0357 -2.0832 17 8 3.1392 1.1084 -1.8601 18 6 3.2215 -0.7068 -3.3252 19 6 3.8917 -0.1191 -4.3602 20 7 4.0856 -1.0737 -5.2922 21 6 4.7613 -0.9106 -6.5818 22 6 5.8966 -1.9302 -6.6952 23 1 6.5987 -1.8213 -5.8685 24 6 6.6219 -1.8012 -8.0567 25 6 6.8732 -3.2585 -8.4903 26 8 6.3766 -4.1103 -7.4424 27 6 5.3384 -3.3747 -6.7602 28 7 3.5216 -2.2539 -4.7874 29 7 3.0220 -2.0011 -3.6278 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2952 35 1 3.9823 -0.4623 0.4320 36 1 7.1885 -1.1121 1.0840 37 1 2.4676 -2.7352 -1.0665 38 1 0.7433 -2.3284 -0.8946 39 1 1.5186 -2.2595 -2.4953 40 1 4.2045 0.9128 -4.4210 41 1 5.1698 0.0973 -6.6532 42 1 4.0468 -1.0712 -7.3892 43 1 5.9862 -1.2920 -8.7811 44 1 7.5654 -1.2686 -7.9375 45 1 6.3393 -3.4666 -9.4175 46 1 7.9411 -3.4241 -8.6324 47 1 5.1826 -3.7714 -5.7569 48 1 4.4100 -3.4021 -7.3309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496198644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:47 Heat of formation + Delta-G solvation = 46.372200 kcal Electronic energy + Delta-G solvation = -29901.893173 eV Core-core repulsion = 25802.431561 eV Total energy + Delta-G solvation = -4099.461612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.20632 -39.79874 -39.27491 -36.25943 -35.52985 -33.89211 -32.60807 -31.88058 -30.72307 -30.01360 -29.46115 -26.87224 -26.45600 -25.54565 -23.86669 -23.09157 -22.42940 -22.15206 -21.19364 -20.60717 -19.01935 -17.73069 -16.99049 -16.86251 -16.42781 -16.23255 -15.80545 -15.65658 -15.40290 -14.75204 -14.63970 -14.53631 -14.40018 -13.68329 -13.57151 -13.42538 -13.22198 -12.97270 -12.59696 -12.42203 -12.33855 -12.23530 -12.14293 -11.89104 -11.83299 -11.77600 -11.40827 -11.38144 -11.19374 -10.80208 -10.72118 -10.64001 -10.36113 -10.33552 -10.00393 -9.94252 -9.62161 -9.61101 -9.17720 -8.79174 -8.10161 -6.80148 -5.64926 -2.93549 1.15450 1.91344 1.92146 3.34747 3.49430 3.52088 3.54270 3.56926 3.64232 3.93637 4.10875 4.14995 4.34486 4.55706 4.58309 4.66595 4.69926 4.75516 4.88545 5.02139 5.03519 5.20950 5.28006 5.33540 5.35593 5.48129 5.50593 5.61052 5.62441 5.68039 5.69054 5.71426 5.75071 6.09618 6.13861 6.24765 6.28267 6.31557 6.47656 6.51313 6.52937 6.59054 6.83745 7.10665 7.78116 7.79339 8.02046 8.52635 8.57379 9.64229 10.24140 10.59449 11.57378 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.003188 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.439495 B = 8780.921863 C =10579.163417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.237 4.237 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.281 1.281 12 H -0.293 1.293 13 H -0.292 1.292 14 N -0.580 5.580 15 C 0.078 3.922 16 C 0.603 3.397 17 O -0.540 6.540 18 C -0.083 4.083 19 C 0.092 3.908 20 N -0.366 5.366 21 C 0.135 3.865 22 C -0.140 4.140 23 H 0.098 0.902 24 C -0.147 4.147 25 C 0.046 3.954 26 O -0.376 6.376 27 C 0.058 3.942 28 N -0.074 5.074 29 N -0.194 5.194 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.387 0.613 36 H 0.252 0.748 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.203 0.797 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.105 0.895 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.446 1.341 -22.175 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.016 3.984 5 N -0.372 5.372 6 C -0.368 4.368 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.736 3.264 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.220 1.220 14 N -0.311 5.311 15 C -0.065 4.065 16 C 0.389 3.611 17 O -0.417 6.417 18 C -0.222 4.222 19 C -0.064 4.064 20 N -0.151 5.151 21 C 0.013 3.987 22 C -0.159 4.159 23 H 0.116 0.884 24 C -0.185 4.185 25 C -0.031 4.031 26 O -0.295 6.295 27 C -0.019 4.019 28 N -0.054 5.054 29 N -0.068 5.068 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.221 0.779 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.220 0.780 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.103 0.897 45 H 0.078 0.922 46 H 0.103 0.897 47 H 0.123 0.877 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.424 0.164 -22.147 23.060 hybrid contribution 1.107 0.852 0.573 1.510 sum -5.317 1.016 -21.574 22.242 Atomic orbital electron populations 1.22071 0.95097 1.02189 1.02015 1.21436 0.93259 0.98469 0.84578 0.88127 1.21004 0.87155 0.96813 0.93465 1.42304 0.99697 1.70051 1.25140 1.19255 0.89411 1.29145 0.98976 0.91252 1.24738 0.96461 1.01807 0.98024 1.69711 1.06893 1.50970 1.30197 0.86146 0.79962 0.78744 0.81528 1.20601 1.22010 1.21974 1.47446 1.49398 1.12703 1.21549 1.22067 1.00715 0.81020 1.02691 1.16718 0.78153 0.85009 0.81256 1.90790 1.56382 1.17731 1.76815 1.21495 1.10370 0.91078 0.99240 1.23328 0.97417 0.97042 0.88616 1.50412 1.40533 1.08690 1.15486 1.21967 0.94209 1.01371 0.81137 1.23088 0.96966 0.96199 0.99660 0.88372 1.22934 1.01653 0.98252 0.95659 1.23164 1.00188 0.88512 0.91257 1.88965 1.53671 1.39530 1.47349 1.23670 0.90366 0.88946 0.98892 1.81909 1.13859 1.03728 1.05912 1.74791 1.12583 1.13489 1.05905 0.91325 0.92653 0.92225 0.95443 0.96104 0.77907 0.93784 0.91748 0.91860 0.89403 0.78016 0.87234 0.88217 0.90090 0.89700 0.92250 0.89715 0.87653 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.18 37.15 0.34 -1.73 16 2 C 0.13 2.25 2.79 -67.93 -0.19 2.06 16 3 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 4 C 0.14 3.04 5.55 -4.04 -0.02 3.02 16 5 N -0.73 -19.58 5.43 -59.91 -0.33 -19.90 16 6 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 9 N -0.93 -29.58 13.06 55.49 0.72 -28.85 16 10 Si 0.90 23.32 29.55 -169.99 -5.02 18.29 16 11 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 13 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 14 N -0.58 -10.54 2.24 -175.18 -0.39 -10.93 16 15 C 0.08 1.27 8.70 59.85 0.52 1.80 16 16 C 0.60 11.57 7.37 -12.47 -0.09 11.48 16 17 O -0.54 -11.65 16.20 5.29 0.09 -11.57 16 18 C -0.08 -1.37 6.69 -83.54 -0.56 -1.92 16 19 C 0.09 1.16 11.28 -16.83 -0.19 0.97 16 20 N -0.37 -4.01 3.69 -61.06 -0.23 -4.23 16 21 C 0.13 0.85 5.93 -4.04 -0.02 0.83 16 22 C -0.14 -1.07 3.37 -88.61 -0.30 -1.37 16 23 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 24 C -0.15 -0.77 6.60 -25.20 -0.17 -0.94 16 25 C 0.05 0.33 7.70 37.73 0.29 0.62 16 26 O -0.38 -4.23 11.53 -35.23 -0.41 -4.63 16 27 C 0.06 0.58 6.09 38.21 0.23 0.81 16 28 N -0.07 -1.05 11.79 60.35 0.71 -0.33 16 29 N -0.19 -3.15 8.82 32.85 0.29 -2.86 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.73 6.67 -51.93 -0.35 0.39 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 35 H 0.39 11.30 7.06 -40.82 -0.29 11.01 16 36 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.06 0.88 6.44 -51.93 -0.33 0.55 16 39 H 0.09 1.34 5.32 -51.93 -0.28 1.06 16 40 H 0.20 1.94 8.06 -52.49 -0.42 1.52 16 41 H 0.11 0.40 8.08 -51.93 -0.42 -0.02 16 42 H 0.10 0.46 8.10 -51.93 -0.42 0.03 16 43 H 0.08 0.26 7.86 -51.93 -0.41 -0.15 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.11 1.29 7.30 -51.93 -0.38 0.91 16 48 H 0.06 0.58 8.02 -51.93 -0.42 0.16 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -37.33 389.34 -6.50 -43.83 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.41 Total: 7.30 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: -0.40 Total: 8.02 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: 0.78 Total: -67.11 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.32 Total: -16.20 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.33 -6.50 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.203 kcal (2) G-P(sol) polarization free energy of solvation -37.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds