Wall clock time and date at job start Tue Mar 31 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47260 * 2 1 4 4 C 1.52998 * 109.47177 * 120.00034 * 2 1 3 5 5 N 1.46496 * 109.47610 * 174.99728 * 4 2 1 6 6 C 1.36937 * 120.00122 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00258 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99805 * 180.02562 * 6 5 4 9 9 N 1.31627 * 119.99980 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99949 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47344 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47160 * 120.00062 * 10 8 6 13 13 H 1.48501 * 109.47357 * 239.99993 * 10 8 6 14 14 N 1.46501 * 109.46969 * 239.99676 * 2 1 3 15 15 C 1.46497 * 120.00412 * 300.00148 * 14 2 1 16 16 C 1.34776 * 119.99557 * 120.00551 * 14 2 1 17 17 O 1.21589 * 120.00728 * 3.47251 * 16 14 2 18 18 C 1.47527 * 119.99904 * 183.47722 * 16 14 2 19 19 C 1.36599 * 125.77527 * 173.17509 * 18 16 14 20 20 N 1.34812 * 106.83933 * 180.17081 * 19 18 16 21 21 C 1.46501 * 126.58854 * 179.90496 * 20 19 18 22 22 C 1.53008 * 109.46580 * 124.71444 * 21 20 19 23 23 H 1.09007 * 110.80026 * 302.81999 * 22 21 20 24 24 C 1.54810 * 110.93299 * 179.17586 * 22 21 20 25 25 C 1.54100 * 104.18794 * 220.90364 * 24 22 21 26 26 O 1.43890 * 107.37380 * 358.10388 * 25 24 22 27 27 C 1.44378 * 106.89804 * 26.27221 * 26 25 24 28 28 N 1.40209 * 106.81423 * 359.64590 * 20 19 18 29 29 N 1.28761 * 108.36668 * 0.22511 * 28 20 19 30 30 H 1.09006 * 109.47432 * 300.00196 * 1 2 3 31 31 H 1.09004 * 109.47211 * 59.99650 * 1 2 3 32 32 H 1.09001 * 109.47724 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.47075 * 294.99932 * 4 2 1 34 34 H 1.09001 * 109.47190 * 54.99733 * 4 2 1 35 35 H 0.96998 * 119.99489 * 0.02562 * 5 4 2 36 36 H 0.96995 * 119.99665 * 179.97438 * 9 8 6 37 37 H 1.08998 * 109.47150 * 263.96410 * 15 14 2 38 38 H 1.08999 * 109.46649 * 23.96308 * 15 14 2 39 39 H 1.08998 * 109.46949 * 143.96044 * 15 14 2 40 40 H 1.07998 * 126.57480 * 0.05983 * 19 18 16 41 41 H 1.08993 * 109.47658 * 4.71395 * 21 20 19 42 42 H 1.09003 * 109.47045 * 244.70891 * 21 20 19 43 43 H 1.09001 * 110.49421 * 339.57898 * 24 22 21 44 44 H 1.08997 * 110.48980 * 102.10033 * 24 22 21 45 45 H 1.08997 * 109.87891 * 117.38923 * 25 24 22 46 46 H 1.09000 * 109.88257 * 238.40276 * 25 24 22 47 47 H 1.09005 * 110.61876 * 201.58143 * 27 26 25 48 48 H 1.09007 * 110.62234 * 78.73915 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.4999 -0.8265 1.1906 6 6 4.1837 -1.4380 2.2073 7 1 3.6467 -1.8424 3.0525 8 6 5.5672 -1.5373 2.1519 9 7 6.2218 -1.0430 1.1225 10 14 6.5000 -2.3708 3.5391 11 1 5.5396 -2.8375 4.5712 12 1 7.2518 -3.5332 3.0016 13 1 7.4502 -1.4051 4.1471 14 7 2.0182 -0.6907 -1.1961 15 6 1.6643 -2.0932 -1.4280 16 6 2.7932 -0.0357 -2.0832 17 8 3.1392 1.1084 -1.8601 18 6 3.2215 -0.7068 -3.3252 19 6 3.8917 -0.1191 -4.3602 20 7 4.0856 -1.0737 -5.2922 21 6 4.7613 -0.9106 -6.5818 22 6 5.8966 -1.9302 -6.6952 23 1 6.5987 -1.8213 -5.8685 24 6 6.6219 -1.8012 -8.0567 25 6 6.8732 -3.2585 -8.4903 26 8 6.3766 -4.1103 -7.4424 27 6 5.3384 -3.3747 -6.7602 28 7 3.5216 -2.2539 -4.7874 29 7 3.0220 -2.0011 -3.6278 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -0.1583 2.1370 34 1 1.6053 -1.7198 1.2952 35 1 3.9823 -0.4623 0.4320 36 1 7.1885 -1.1121 1.0840 37 1 2.4676 -2.7352 -1.0665 38 1 0.7433 -2.3284 -0.8946 39 1 1.5186 -2.2595 -2.4953 40 1 4.2045 0.9128 -4.4210 41 1 5.1698 0.0973 -6.6532 42 1 4.0468 -1.0712 -7.3892 43 1 5.9862 -1.2920 -8.7811 44 1 7.5654 -1.2686 -7.9375 45 1 6.3393 -3.4666 -9.4175 46 1 7.9411 -3.4241 -8.6324 47 1 5.1826 -3.7714 -5.7569 48 1 4.4100 -3.4021 -7.3309 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496198644.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:46 Heat of formation + Delta-G solvation = 18.649832 kcal Electronic energy + Delta-G solvation = -29903.095305 eV Core-core repulsion = 25802.431561 eV Total energy + Delta-G solvation = -4100.663744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26586 -40.80940 -40.36305 -37.82805 -36.39481 -35.78662 -33.71726 -33.24767 -32.14125 -31.40604 -30.25688 -27.88228 -27.56820 -27.36673 -25.14597 -24.31932 -23.89012 -22.96248 -22.19657 -21.58265 -20.37313 -19.12884 -18.79844 -17.72934 -17.59706 -17.22951 -16.91339 -16.64551 -16.58713 -16.25446 -15.88698 -15.64412 -15.35455 -15.16658 -15.10402 -14.86915 -14.12648 -14.11365 -13.83671 -13.74078 -13.72825 -13.49631 -13.22265 -13.13170 -12.98865 -12.82170 -12.67454 -12.49508 -12.37486 -12.18572 -12.09641 -11.87768 -11.77918 -11.70393 -11.63587 -11.27539 -11.08396 -10.94038 -10.69191 -10.31025 -9.54698 -8.99126 -7.93726 -5.23124 0.15022 0.66916 1.09064 1.43700 1.45657 1.55630 2.01748 2.28320 2.54907 2.88207 3.18297 3.32803 3.39270 3.48056 3.60989 3.69039 3.89209 3.94155 4.01199 4.09769 4.11950 4.20829 4.32052 4.32570 4.38985 4.41251 4.43578 4.51077 4.61674 4.78994 4.82192 4.83273 4.86222 4.88114 4.91255 4.99016 4.99634 5.13730 5.15758 5.18564 5.35187 5.46241 5.47685 5.69353 5.88185 6.26271 6.38822 6.88270 7.16954 7.32536 8.10108 8.32989 9.29830 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010362 B = 0.003188 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.439495 B = 8780.921863 C =10579.163417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.129 3.871 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.743 5.743 6 C -0.240 4.240 7 H 0.079 0.921 8 C -0.080 4.080 9 N -0.970 5.970 10 Si 0.975 3.025 11 H -0.262 1.262 12 H -0.296 1.296 13 H -0.293 1.293 14 N -0.584 5.584 15 C 0.087 3.913 16 C 0.594 3.406 17 O -0.576 6.576 18 C -0.120 4.120 19 C 0.109 3.891 20 N -0.348 5.348 21 C 0.125 3.875 22 C -0.136 4.136 23 H 0.073 0.927 24 C -0.133 4.133 25 C 0.034 3.966 26 O -0.412 6.412 27 C 0.055 3.945 28 N -0.085 5.085 29 N -0.218 5.218 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.371 0.629 36 H 0.247 0.753 37 H 0.029 0.971 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.234 0.766 41 H 0.149 0.851 42 H 0.129 0.871 43 H 0.113 0.887 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.410 1.923 -23.601 24.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.025 3.975 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.385 5.385 6 C -0.372 4.372 7 H 0.097 0.903 8 C -0.272 4.272 9 N -0.621 5.621 10 Si 0.804 3.196 11 H -0.186 1.186 12 H -0.223 1.223 13 H -0.221 1.221 14 N -0.314 5.314 15 C -0.056 4.056 16 C 0.381 3.619 17 O -0.456 6.456 18 C -0.259 4.259 19 C -0.048 4.048 20 N -0.133 5.133 21 C 0.007 3.993 22 C -0.156 4.156 23 H 0.092 0.908 24 C -0.171 4.171 25 C -0.042 4.042 26 O -0.332 6.332 27 C -0.022 4.022 28 N -0.065 5.065 29 N -0.091 5.091 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.203 0.797 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.250 0.750 41 H 0.167 0.833 42 H 0.147 0.853 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.090 0.910 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.443 0.711 -23.577 24.734 hybrid contribution 1.424 0.640 0.917 1.811 sum -6.019 1.351 -22.659 23.484 Atomic orbital electron populations 1.21988 0.90991 1.03609 1.03475 1.21397 0.96249 0.96569 0.83245 0.90487 1.21234 0.84091 0.97770 0.95534 1.42533 1.02075 1.69766 1.24114 1.19705 0.89957 1.28132 0.99418 0.90317 1.25621 0.97579 1.03284 1.00700 1.69897 1.06699 1.53037 1.32500 0.85038 0.78503 0.77237 0.78782 1.18628 1.22347 1.22058 1.47590 1.49165 1.13262 1.21353 1.22032 1.00340 0.79467 1.03722 1.17166 0.77652 0.84855 0.82188 1.90745 1.57735 1.19212 1.77891 1.21406 1.13118 0.91776 0.99645 1.23742 0.95408 0.98195 0.87476 1.50717 1.39081 1.07226 1.16309 1.22548 0.94226 1.03042 0.79516 1.23002 0.97065 0.95019 1.00490 0.90805 1.22921 1.02521 0.97236 0.94450 1.23441 1.00624 0.89307 0.90820 1.88921 1.54180 1.41340 1.48717 1.23631 0.90935 0.90280 0.97328 1.81823 1.14117 1.05132 1.05417 1.74734 1.13744 1.13684 1.06945 0.89561 0.91525 0.90753 0.94622 0.95042 0.79727 0.94377 0.95234 0.89247 0.88298 0.74985 0.83276 0.85265 0.86864 0.88581 0.90717 0.89317 0.91045 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.50 9.18 71.98 0.66 -2.84 16 2 C 0.13 4.60 2.79 44.99 0.13 4.72 16 3 H 0.08 3.13 6.90 -2.39 -0.02 3.11 16 4 C 0.14 5.92 5.55 86.38 0.48 6.40 16 5 N -0.74 -40.85 5.43 -343.46 -1.87 -42.71 16 6 C -0.24 -14.19 9.99 84.03 0.84 -13.35 16 7 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 8 C -0.08 -4.87 5.50 84.86 0.47 -4.41 16 9 N -0.97 -63.63 13.06 21.65 0.28 -63.35 16 10 Si 0.98 48.64 29.55 68.60 2.03 50.67 16 11 H -0.26 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 13 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 14 N -0.58 -21.58 2.24 -826.40 -1.85 -23.44 16 15 C 0.09 2.87 8.70 127.77 1.11 3.98 16 16 C 0.59 23.52 7.37 86.69 0.64 24.16 16 17 O -0.58 -25.75 16.20 -4.00 -0.06 -25.82 16 18 C -0.12 -4.03 6.69 40.82 0.27 -3.76 16 19 C 0.11 2.65 11.28 83.85 0.95 3.59 16 20 N -0.35 -7.12 3.69 -347.09 -1.28 -8.40 16 21 C 0.13 1.18 5.93 86.38 0.51 1.70 16 22 C -0.14 -1.86 3.37 -9.49 -0.03 -1.90 16 23 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 24 C -0.13 -0.99 6.60 31.58 0.21 -0.78 16 25 C 0.03 0.43 7.70 72.35 0.56 0.99 16 26 O -0.41 -9.31 11.53 -148.98 -1.72 -11.03 16 27 C 0.05 1.09 6.09 72.66 0.44 1.53 16 28 N -0.08 -2.40 11.79 37.02 0.44 -1.96 16 29 N -0.22 -7.25 8.82 -49.99 -0.44 -7.69 16 30 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.62 6.67 -2.39 -0.02 1.60 16 33 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.03 1.27 7.84 -2.39 -0.02 1.25 16 35 H 0.37 22.56 7.06 -92.71 -0.65 21.91 16 36 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 2.39 6.44 -2.39 -0.02 2.38 16 39 H 0.10 3.06 5.32 -2.39 -0.01 3.05 16 40 H 0.23 3.98 8.06 -2.91 -0.02 3.96 16 41 H 0.15 0.34 8.08 -2.39 -0.02 0.32 16 42 H 0.13 0.59 8.10 -2.39 -0.02 0.57 16 43 H 0.11 0.16 7.86 -2.39 -0.02 0.14 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.88 7.30 -2.38 -0.02 1.86 16 48 H 0.08 1.29 8.02 -2.38 -0.02 1.27 16 Total: -1.00 -85.94 389.34 3.07 -82.86 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: 0.32 Total: 30.83 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: 7.23 Total: 20.04 kcal Atomic # 7 Polarization: -142.83 SS G_CDS: -4.72 Total: -147.55 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.78 Total: -36.85 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.67 kcal Total: -85.94 3.07 -82.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496198644.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.514 kcal (2) G-P(sol) polarization free energy of solvation -85.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds