Wall clock time and date at job start Tue Mar 31 2020 20:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47160 * 2 1 4 4 C 1.35854 * 126.13101 * 270.00009 * 3 2 1 5 5 N 1.30175 * 108.99845 * 179.76066 * 4 3 2 6 6 C 1.35757 * 108.86967 * 0.38040 * 5 4 3 7 7 C 1.47325 * 126.23555 * 179.87746 * 6 5 4 8 8 O 1.21621 * 119.99784 * 185.61955 * 7 6 5 9 9 N 1.34780 * 119.99837 * 5.62678 * 7 6 5 10 10 C 1.46492 * 120.00038 * 356.03870 * 9 7 6 11 11 C 1.46501 * 119.99595 * 176.03780 * 9 7 6 12 12 H 1.09003 * 109.47125 * 0.02562 * 11 9 7 13 13 C 1.52996 * 109.47336 * 239.99815 * 11 9 7 14 14 C 1.52997 * 109.46803 * 120.00126 * 11 9 7 15 15 N 1.46907 * 109.47336 * 304.99770 * 14 11 9 16 16 C 1.46892 * 111.00303 * 179.97438 * 15 14 11 17 17 C 1.50700 * 109.47351 * 179.97438 * 16 15 14 18 18 O 1.21287 * 119.99841 * 0.02562 * 17 16 15 19 19 N 1.34774 * 119.99955 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00053 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99540 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00388 * 180.02562 * 20 19 17 23 23 N 1.31410 * 120.00206 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99927 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46977 * 89.99960 * 24 22 20 26 26 H 1.48505 * 109.46954 * 210.00235 * 24 22 20 27 27 H 1.48500 * 109.46762 * 329.99945 * 24 22 20 28 28 C 1.35380 * 126.14085 * 89.99988 * 3 2 1 29 29 H 1.09000 * 109.47414 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47024 * 300.00318 * 1 2 3 31 31 H 1.08999 * 109.47408 * 59.99992 * 1 2 3 32 32 H 1.09002 * 109.46909 * 240.00199 * 2 1 3 33 33 H 1.08999 * 109.47408 * 120.00008 * 2 1 3 34 34 H 1.07997 * 125.50126 * 0.02644 * 4 3 2 35 35 H 1.09002 * 109.47275 * 275.71321 * 10 9 7 36 36 H 1.08999 * 109.47540 * 35.71839 * 10 9 7 37 37 H 1.09001 * 109.46874 * 155.71570 * 10 9 7 38 38 H 1.08998 * 109.47027 * 300.00526 * 13 11 9 39 39 H 1.09001 * 109.46980 * 60.00107 * 13 11 9 40 40 H 1.08999 * 109.47364 * 180.02562 * 13 11 9 41 41 H 1.09005 * 109.47497 * 185.00297 * 14 11 9 42 42 H 1.09001 * 109.47332 * 64.99711 * 14 11 9 43 43 H 1.00904 * 110.99832 * 303.95902 * 15 14 11 44 44 H 1.09002 * 109.47514 * 300.00240 * 16 15 14 45 45 H 1.09007 * 109.47004 * 60.00384 * 16 15 14 46 46 H 0.97003 * 120.00369 * 0.02562 * 19 17 16 47 47 H 0.96999 * 120.00431 * 180.02562 * 23 22 20 48 48 H 1.08003 * 126.55871 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2853 2.1364 -1.0973 5 7 2.6952 3.3110 -0.7138 6 6 2.7136 3.3481 0.6432 7 6 3.1177 4.4931 1.4776 8 8 3.1889 4.3701 2.6854 9 7 3.4084 5.6768 0.9023 10 6 3.4070 5.8018 -0.5573 11 6 3.7257 6.8384 1.7368 12 1 3.6774 6.5545 2.7881 13 6 2.7160 7.9546 1.4624 14 6 5.1353 7.3334 1.4069 15 7 6.0902 6.2270 1.5555 16 6 7.4573 6.6662 1.2455 17 6 8.4065 5.5072 1.4092 18 8 7.9856 4.4221 1.7501 19 7 9.7232 5.6767 1.1768 20 6 10.5868 4.6222 1.3252 21 1 10.2118 3.6557 1.6280 22 6 11.9443 4.7970 1.0862 23 7 12.7719 3.7861 1.2280 24 14 12.5928 6.4685 0.5619 25 1 12.9564 7.2582 1.7657 26 1 13.7936 6.2877 -0.2930 27 1 11.5438 7.1883 -0.2041 28 6 2.2845 2.1340 1.0933 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1715 1.8157 -2.1222 35 1 4.3714 5.4799 -0.9504 36 1 2.6175 5.1770 -0.9748 37 1 3.2312 6.8417 -0.8326 38 1 2.7647 8.2382 0.4111 39 1 1.7117 7.6019 1.6974 40 1 2.9523 8.8190 2.0830 41 1 5.4056 8.1405 2.0879 42 1 5.1608 7.6999 0.3807 43 1 6.0394 5.8274 2.4807 44 1 7.4986 7.0278 0.2181 45 1 7.7439 7.4689 1.9251 46 1 10.0600 6.5447 0.9046 47 1 13.7197 3.9082 1.0614 48 1 2.1770 1.8313 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496207540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:43 Heat of formation + Delta-G solvation = 12.719069 kcal Electronic energy + Delta-G solvation = -29368.788167 eV Core-core repulsion = 25267.867246 eV Total energy + Delta-G solvation = -4100.920921 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.29234 -39.51503 -38.32982 -36.60506 -35.33607 -34.50378 -33.71980 -31.74162 -31.51987 -30.52015 -29.51324 -27.63304 -26.57513 -25.01079 -24.51514 -23.38781 -22.82590 -21.19669 -20.65911 -19.36366 -19.05504 -18.20212 -17.57388 -16.69069 -16.23279 -15.78792 -15.61490 -15.30432 -15.02049 -14.76866 -14.75291 -14.31720 -14.09706 -13.95913 -13.83536 -13.48194 -13.20446 -13.11953 -12.98765 -12.66063 -12.58391 -12.52579 -12.24276 -12.15978 -12.07155 -11.89308 -11.80692 -11.55009 -11.42410 -11.09445 -10.77710 -10.53863 -10.07741 -9.90911 -9.89700 -9.60925 -9.49396 -8.71415 -8.49124 -8.22978 -8.10600 -7.95306 -6.24100 -3.74921 1.62233 2.41510 2.43997 3.07999 3.11600 3.19205 3.25912 3.73768 3.85073 4.15732 4.18901 4.21942 4.37327 4.46132 4.56325 4.75556 4.84164 4.97254 5.03587 5.12684 5.14770 5.18447 5.27678 5.33480 5.41031 5.41982 5.51838 5.52588 5.64894 5.70240 5.74437 5.91907 5.93572 5.94267 5.99380 6.03734 6.15989 6.27696 6.47969 6.78677 6.98821 7.26376 7.61414 7.66573 7.74653 7.79654 8.22874 8.51485 8.68518 9.03206 9.50607 9.93039 10.89388 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.011550 B = 0.002740 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.598648 B =10216.968533 C =11906.405482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.457 5.457 4 C 0.179 3.821 5 N -0.456 5.456 6 C -0.050 4.050 7 C 0.609 3.391 8 O -0.551 6.551 9 N -0.579 5.579 10 C 0.079 3.921 11 C 0.137 3.863 12 H 0.099 0.901 13 C -0.158 4.158 14 C 0.050 3.950 15 N -0.661 5.661 16 C 0.050 3.950 17 C 0.452 3.548 18 O -0.560 6.560 19 N -0.594 5.594 20 C -0.302 4.302 21 H 0.119 0.881 22 C 0.039 3.961 23 N -0.884 5.884 24 Si 0.880 3.120 25 H -0.272 1.272 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.032 3.968 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.101 0.899 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.352 0.648 44 H 0.085 0.915 45 H 0.042 0.958 46 H 0.370 0.630 47 H 0.272 0.728 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.766 1.651 -5.658 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.024 4.024 3 N -0.139 5.139 4 C -0.103 4.103 5 N -0.175 5.175 6 C -0.178 4.178 7 C 0.397 3.603 8 O -0.430 6.430 9 N -0.310 5.310 10 C -0.063 4.063 11 C 0.033 3.967 12 H 0.117 0.883 13 C -0.216 4.216 14 C -0.081 4.081 15 N -0.294 5.294 16 C -0.083 4.083 17 C 0.238 3.762 18 O -0.441 6.441 19 N -0.234 5.234 20 C -0.430 4.430 21 H 0.136 0.864 22 C -0.163 4.163 23 N -0.525 5.525 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.107 4.107 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.224 0.776 35 H 0.076 0.924 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.091 0.909 43 H 0.172 0.828 44 H 0.103 0.897 45 H 0.060 0.940 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -26.714 1.045 -5.952 27.389 hybrid contribution 0.944 1.095 0.585 1.559 sum -25.769 2.140 -5.367 26.409 Atomic orbital electron populations 1.22172 0.93903 1.03324 1.03358 1.21953 0.95672 0.79567 1.05254 1.45497 1.48544 1.13025 1.06875 1.25268 1.03796 0.87720 0.93566 1.70739 1.17820 1.18519 1.10435 1.20510 1.11372 0.95545 0.90400 1.16816 0.76196 0.81219 0.86045 1.90757 1.54951 1.83231 1.14018 1.47267 1.67452 1.08782 1.07459 1.22114 1.04193 1.01132 0.78911 1.21072 0.93080 0.85585 0.96946 0.88304 1.22092 0.99208 0.98041 1.02286 1.22349 0.91886 0.92505 1.01323 1.59962 1.03346 1.29901 1.36203 1.21690 0.89274 0.95883 1.01466 1.19756 0.82585 0.89880 0.84024 1.90584 1.76540 1.26803 1.50132 1.42208 1.06656 1.11817 1.62750 1.19431 0.87632 0.92414 1.43562 0.86384 1.25027 0.95744 0.97627 0.97890 1.69624 1.03816 1.30262 1.48799 0.86664 0.79448 0.83990 0.79243 1.19717 1.20242 1.19491 1.22539 1.03235 0.91754 0.93157 0.90386 0.91717 0.91697 0.88412 0.88645 0.77567 0.92370 0.88085 0.92891 0.92073 0.92123 0.91473 0.94645 0.90894 0.82799 0.89699 0.94015 0.79772 0.91724 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.24 37.16 0.38 -0.26 16 2 C 0.10 0.47 6.84 -4.04 -0.03 0.44 16 3 N -0.46 -4.11 2.73 -118.36 -0.32 -4.43 16 4 C 0.18 1.74 12.55 -89.90 -1.13 0.62 16 5 N -0.46 -6.03 7.77 -11.03 -0.09 -6.11 16 6 C -0.05 -0.73 6.67 -83.09 -0.55 -1.29 16 7 C 0.61 10.24 7.66 -12.56 -0.10 10.14 16 8 O -0.55 -10.63 16.22 5.26 0.09 -10.55 16 9 N -0.58 -8.39 2.48 -175.25 -0.44 -8.83 16 10 C 0.08 1.01 8.77 59.84 0.52 1.54 16 11 C 0.14 1.76 2.87 -67.93 -0.20 1.57 16 12 H 0.10 1.44 6.90 -51.93 -0.36 1.08 16 13 C -0.16 -1.49 9.18 37.16 0.34 -1.14 16 14 C 0.05 0.66 4.98 -3.82 -0.02 0.64 16 15 N -0.66 -11.66 5.85 -115.05 -0.67 -12.34 16 16 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 17 C 0.45 11.01 7.82 -10.99 -0.09 10.92 16 18 O -0.56 -16.19 15.78 5.55 0.09 -16.11 16 19 N -0.59 -14.93 5.09 -10.96 -0.06 -14.98 16 20 C -0.30 -8.90 10.16 -14.93 -0.15 -9.05 16 21 H 0.12 3.98 7.39 -52.48 -0.39 3.60 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.63 13.96 55.50 0.77 -25.85 16 24 Si 0.88 20.05 27.74 -169.99 -4.71 15.33 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 28 C 0.03 0.38 11.27 -16.64 -0.19 0.19 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.10 1.28 5.22 -51.93 -0.27 1.01 16 37 H 0.05 0.55 6.44 -51.93 -0.33 0.21 16 38 H 0.06 0.52 6.67 -51.93 -0.35 0.18 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.89 7.84 -51.93 -0.41 0.48 16 43 H 0.35 6.88 8.43 -39.29 -0.33 6.55 16 44 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.37 8.15 5.76 -40.82 -0.24 7.91 16 47 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.18 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -38.68 397.66 -8.01 -46.69 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -7.34 Total: 14.97 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: -1.33 Total: 16.20 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -0.80 Total: -72.54 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.17 Total: -26.65 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.71 Total: 15.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.68 -8.01 -46.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -38.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds