Wall clock time and date at job start Tue Mar 31 2020 20:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47218 * 2 1 4 4 C 1.35850 * 126.13085 * 270.00215 * 3 2 1 5 5 N 1.30173 * 108.99930 * 179.75818 * 4 3 2 6 6 C 1.35758 * 108.86455 * 0.38575 * 5 4 3 7 7 C 1.47332 * 126.23099 * 179.88529 * 6 5 4 8 8 O 1.21620 * 119.99948 * 185.77459 * 7 6 5 9 9 N 1.34776 * 119.99801 * 5.77019 * 7 6 5 10 10 C 1.46495 * 120.00337 * 5.36113 * 9 7 6 11 11 C 1.46501 * 119.99514 * 185.08252 * 9 7 6 12 12 H 1.09002 * 109.47298 * 0.27829 * 11 9 7 13 13 C 1.53005 * 109.47197 * 120.27980 * 11 9 7 14 14 C 1.53003 * 109.47243 * 240.27597 * 11 9 7 15 15 N 1.46903 * 109.46915 * 55.00102 * 14 11 9 16 16 C 1.46899 * 111.00163 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.47307 * 180.02562 * 16 15 14 18 18 O 1.21287 * 120.00027 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99752 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00095 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99853 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99500 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47073 * 90.00238 * 24 22 20 26 26 H 1.48501 * 109.47037 * 210.00011 * 24 22 20 27 27 H 1.48500 * 109.47244 * 329.99944 * 24 22 20 28 28 C 1.35374 * 126.13644 * 90.00030 * 3 2 1 29 29 H 1.09009 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47389 * 299.99840 * 1 2 3 31 31 H 1.08993 * 109.47538 * 60.00267 * 1 2 3 32 32 H 1.09004 * 109.47031 * 239.99822 * 2 1 3 33 33 H 1.09003 * 109.47087 * 120.00063 * 2 1 3 34 34 H 1.08000 * 125.49761 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.47251 * 275.03925 * 10 9 7 36 36 H 1.09004 * 109.46860 * 35.04440 * 10 9 7 37 37 H 1.08997 * 109.47111 * 155.04307 * 10 9 7 38 38 H 1.09006 * 109.46769 * 300.00016 * 13 11 9 39 39 H 1.08992 * 109.47090 * 59.99759 * 13 11 9 40 40 H 1.08998 * 109.46812 * 180.02562 * 13 11 9 41 41 H 1.08997 * 109.47205 * 174.99930 * 14 11 9 42 42 H 1.08998 * 109.47316 * 295.00455 * 14 11 9 43 43 H 1.00907 * 110.99872 * 56.04560 * 15 14 11 44 44 H 1.09001 * 109.47228 * 300.00189 * 16 15 14 45 45 H 1.09001 * 109.46772 * 59.99833 * 16 15 14 46 46 H 0.97001 * 120.00331 * 359.97438 * 19 17 16 47 47 H 0.97008 * 119.99529 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56322 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2853 2.1364 -1.0972 5 7 2.6951 3.3110 -0.7138 6 6 2.7137 3.3480 0.6432 7 6 3.1176 4.4931 1.4776 8 8 3.1917 4.3693 2.6852 9 7 3.4052 5.6776 0.9026 10 6 3.2037 5.8613 -0.5367 11 6 3.9136 6.7834 1.7182 12 1 3.9970 6.4609 2.7561 13 6 5.2910 7.2057 1.2031 14 6 2.9501 7.9685 1.6281 15 7 1.6001 7.5320 2.0091 16 6 0.6460 8.6465 1.9349 17 6 -0.7245 8.1618 2.3324 18 8 -0.8902 7.0020 2.6462 19 7 -1.7662 9.0170 2.3383 20 6 -3.0131 8.5759 2.6994 21 1 -3.1606 7.5432 2.9788 22 6 -4.0869 9.4576 2.7059 23 7 -5.2820 9.0349 3.0526 24 14 -3.8319 11.2437 2.2220 25 1 -4.0374 11.3943 0.7591 26 1 -4.8055 12.0974 2.9491 27 1 -2.4502 11.6593 2.5732 28 6 2.2844 2.1339 1.0933 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1714 1.8157 -2.1222 35 1 4.0819 5.5046 -1.0750 36 1 2.3276 5.2968 -0.8559 37 1 3.0518 6.9193 -0.7502 38 1 5.9775 6.3614 1.2672 39 1 5.2076 7.5281 0.1653 40 1 5.6694 8.0281 1.8102 41 1 3.2808 8.7577 2.3032 42 1 2.9345 8.3473 0.6062 43 1 1.6004 7.1173 2.9290 44 1 0.9609 9.4402 2.6124 45 1 0.6144 9.0304 0.9152 46 1 -1.6338 9.9444 2.0870 47 1 -6.0316 9.6506 3.0575 48 1 2.1770 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496207565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:45 Heat of formation + Delta-G solvation = 10.404370 kcal Electronic energy + Delta-G solvation = -29448.812817 eV Core-core repulsion = 25347.791523 eV Total energy + Delta-G solvation = -4101.021294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.27663 -39.52280 -38.34316 -36.61753 -35.29178 -34.50638 -33.73079 -31.73874 -31.52520 -30.48042 -29.49481 -27.63630 -26.58583 -25.02277 -24.47466 -23.37598 -22.84264 -21.17272 -20.65600 -19.36882 -19.04712 -18.21304 -17.57700 -16.69752 -16.19330 -15.88536 -15.58055 -15.23933 -15.06596 -14.75979 -14.69735 -14.25287 -14.10825 -13.89504 -13.87908 -13.49113 -13.22536 -13.10998 -12.85093 -12.69402 -12.60631 -12.46929 -12.24053 -12.12294 -12.09118 -11.86738 -11.73499 -11.58562 -11.41526 -11.10235 -10.79610 -10.54829 -10.15808 -9.92100 -9.86680 -9.64952 -9.50652 -8.70882 -8.50359 -8.25880 -8.11751 -7.97848 -6.25420 -3.76261 1.63338 2.40601 2.47460 3.06787 3.10886 3.18416 3.24479 3.75425 3.83471 4.14616 4.19392 4.22887 4.36365 4.53591 4.60398 4.76193 4.84318 4.96092 5.07345 5.16045 5.22767 5.24285 5.26721 5.33973 5.43363 5.44249 5.51268 5.61577 5.70550 5.72986 5.76779 5.88679 5.90540 5.95133 6.01567 6.02549 6.06630 6.25762 6.44189 6.78909 6.96346 7.24406 7.61307 7.65235 7.72939 7.79130 8.21452 8.50987 8.67151 9.01827 9.49269 9.91555 10.88027 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002968 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.583859 B = 9432.932929 C =11467.503841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.100 3.900 3 N -0.457 5.457 4 C 0.178 3.822 5 N -0.457 5.457 6 C -0.052 4.052 7 C 0.610 3.390 8 O -0.550 6.550 9 N -0.581 5.581 10 C 0.098 3.902 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.156 4.156 14 C 0.048 3.952 15 N -0.662 5.662 16 C 0.049 3.951 17 C 0.452 3.548 18 O -0.560 6.560 19 N -0.594 5.594 20 C -0.302 4.302 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.884 5.884 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.034 3.966 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.207 0.793 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.036 0.964 42 H 0.073 0.927 43 H 0.353 0.647 44 H 0.042 0.958 45 H 0.085 0.915 46 H 0.370 0.630 47 H 0.272 0.728 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.234 -11.909 -10.316 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.022 4.022 3 N -0.140 5.140 4 C -0.105 4.105 5 N -0.177 5.177 6 C -0.181 4.181 7 C 0.398 3.602 8 O -0.428 6.428 9 N -0.311 5.311 10 C -0.045 4.045 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.215 4.215 14 C -0.082 4.082 15 N -0.294 5.294 16 C -0.084 4.084 17 C 0.238 3.762 18 O -0.441 6.441 19 N -0.234 5.234 20 C -0.431 4.431 21 H 0.136 0.864 22 C -0.163 4.163 23 N -0.525 5.525 24 Si 0.707 3.293 25 H -0.197 1.197 26 H -0.203 1.203 27 H -0.195 1.195 28 C -0.104 4.104 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.224 0.776 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.172 0.828 44 H 0.060 0.940 45 H 0.103 0.897 46 H 0.202 0.798 47 H 0.083 0.917 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 19.953 -12.415 -10.575 25.770 hybrid contribution -0.200 1.404 0.705 1.584 sum 19.753 -11.012 -9.869 24.675 Atomic orbital electron populations 1.22195 0.93606 1.03371 1.03945 1.21943 0.96046 0.79404 1.04821 1.45511 1.48442 1.13147 1.06877 1.25211 1.04083 0.87695 0.93539 1.70810 1.18255 1.18146 1.10453 1.20501 1.11960 0.95217 0.90412 1.16827 0.76039 0.81350 0.85971 1.90758 1.54458 1.83888 1.13719 1.47266 1.63965 1.10643 1.09250 1.21785 1.02440 1.01104 0.79154 1.21073 0.92083 0.86436 0.97026 0.88302 1.22076 0.96039 1.01648 1.01737 1.22361 0.89260 0.95520 1.01091 1.59990 1.04327 1.29216 1.35897 1.21696 0.92566 0.92663 1.01441 1.19751 0.85381 0.86882 0.84232 1.90582 1.84455 1.17614 1.51459 1.42208 1.08770 1.10213 1.62207 1.19430 0.82112 0.99334 1.42219 0.86385 1.25029 0.95063 0.98418 0.97756 1.69634 0.99602 1.35729 1.47502 0.86658 0.78294 0.84976 0.79373 1.19662 1.20267 1.19541 1.22568 1.02708 0.91963 0.93191 0.90387 0.91327 0.91517 0.88601 0.88806 0.77613 0.93376 0.89271 0.92422 0.92148 0.92124 0.91523 0.94554 0.90819 0.82755 0.93991 0.89696 0.79762 0.91721 0.79771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 37.16 0.38 -0.62 16 2 C 0.10 0.51 6.84 -4.04 -0.03 0.48 16 3 N -0.46 -4.18 2.73 -118.36 -0.32 -4.50 16 4 C 0.18 1.72 12.55 -89.90 -1.13 0.59 16 5 N -0.46 -5.96 8.03 -11.03 -0.09 -6.05 16 6 C -0.05 -0.77 6.59 -83.09 -0.55 -1.32 16 7 C 0.61 10.25 7.66 -12.56 -0.10 10.15 16 8 O -0.55 -10.61 16.23 5.26 0.09 -10.53 16 9 N -0.58 -8.39 2.49 -175.23 -0.44 -8.83 16 10 C 0.10 1.25 8.32 59.84 0.50 1.75 16 11 C 0.14 1.76 2.87 -67.93 -0.20 1.57 16 12 H 0.10 1.44 6.91 -51.93 -0.36 1.08 16 13 C -0.16 -1.49 9.19 37.16 0.34 -1.14 16 14 C 0.05 0.62 4.95 -3.82 -0.02 0.60 16 15 N -0.66 -11.48 5.85 -115.05 -0.67 -12.15 16 16 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 17 C 0.45 10.88 7.82 -10.98 -0.09 10.79 16 18 O -0.56 -16.02 15.78 5.55 0.09 -15.93 16 19 N -0.59 -14.78 5.09 -10.96 -0.06 -14.83 16 20 C -0.30 -8.85 10.16 -14.93 -0.15 -9.00 16 21 H 0.12 3.95 7.39 -52.49 -0.39 3.57 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -26.46 13.96 55.50 0.77 -25.68 16 24 Si 0.88 19.92 27.74 -169.99 -4.71 15.21 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.27 -5.59 6.52 56.52 0.37 -5.22 16 28 C 0.03 0.42 11.27 -16.65 -0.19 0.24 16 29 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.05 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.09 1.31 5.87 -51.93 -0.30 1.00 16 37 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.53 7.67 -51.93 -0.40 0.13 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.88 6.86 -51.93 -0.36 0.52 16 43 H 0.35 6.80 8.43 -39.29 -0.33 6.46 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.37 8.07 5.76 -40.82 -0.24 7.84 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -38.16 398.14 -8.06 -46.23 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -7.38 Total: 15.12 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: -1.35 Total: 15.95 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -0.80 Total: -72.04 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: 0.17 Total: -26.46 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.71 Total: 15.21 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -38.16 -8.06 -46.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.630 kcal (2) G-P(sol) polarization free energy of solvation -38.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds