Wall clock time and date at job start Tue Mar 31 2020 20:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46501 * 109.47218 * 2 1 4 4 C 1.35850 * 126.13085 * 270.00215 * 3 2 1 5 5 N 1.30173 * 108.99930 * 179.75818 * 4 3 2 6 6 C 1.35758 * 108.86455 * 0.38575 * 5 4 3 7 7 C 1.47332 * 126.23099 * 179.88529 * 6 5 4 8 8 O 1.21620 * 119.99948 * 185.77459 * 7 6 5 9 9 N 1.34776 * 119.99801 * 5.77019 * 7 6 5 10 10 C 1.46495 * 120.00337 * 5.36113 * 9 7 6 11 11 C 1.46501 * 119.99514 * 185.08252 * 9 7 6 12 12 H 1.09002 * 109.47298 * 0.27829 * 11 9 7 13 13 C 1.53005 * 109.47197 * 120.27980 * 11 9 7 14 14 C 1.53003 * 109.47243 * 240.27597 * 11 9 7 15 15 N 1.46903 * 109.46915 * 55.00102 * 14 11 9 16 16 C 1.46899 * 111.00163 * 179.97438 * 15 14 11 17 17 C 1.50703 * 109.47307 * 180.02562 * 16 15 14 18 18 O 1.21287 * 120.00027 * 359.97438 * 17 16 15 19 19 N 1.34775 * 119.99696 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99752 * 179.97438 * 19 17 16 21 21 H 1.08002 * 120.00095 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99853 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99500 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 120.00273 * 0.02562 * 22 20 19 25 25 H 1.48494 * 109.47073 * 90.00238 * 24 22 20 26 26 H 1.48501 * 109.47037 * 210.00011 * 24 22 20 27 27 H 1.48500 * 109.47244 * 329.99944 * 24 22 20 28 28 C 1.35374 * 126.13644 * 90.00030 * 3 2 1 29 29 H 1.09009 * 109.47202 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47389 * 299.99840 * 1 2 3 31 31 H 1.08993 * 109.47538 * 60.00267 * 1 2 3 32 32 H 1.09004 * 109.47031 * 239.99822 * 2 1 3 33 33 H 1.09003 * 109.47087 * 120.00063 * 2 1 3 34 34 H 1.08000 * 125.49761 * 0.02562 * 4 3 2 35 35 H 1.09004 * 109.47251 * 275.03925 * 10 9 7 36 36 H 1.09004 * 109.46860 * 35.04440 * 10 9 7 37 37 H 1.08997 * 109.47111 * 155.04307 * 10 9 7 38 38 H 1.09006 * 109.46769 * 300.00016 * 13 11 9 39 39 H 1.08992 * 109.47090 * 59.99759 * 13 11 9 40 40 H 1.08998 * 109.46812 * 180.02562 * 13 11 9 41 41 H 1.08997 * 109.47205 * 174.99930 * 14 11 9 42 42 H 1.08998 * 109.47316 * 295.00455 * 14 11 9 43 43 H 1.00907 * 110.99872 * 56.04560 * 15 14 11 44 44 H 1.09001 * 109.47228 * 300.00189 * 16 15 14 45 45 H 1.09001 * 109.46772 * 59.99833 * 16 15 14 46 46 H 0.97001 * 120.00331 * 359.97438 * 19 17 16 47 47 H 0.97008 * 119.99529 * 179.97438 * 23 22 20 48 48 H 1.08001 * 126.56322 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2853 2.1364 -1.0972 5 7 2.6951 3.3110 -0.7138 6 6 2.7137 3.3480 0.6432 7 6 3.1176 4.4931 1.4776 8 8 3.1917 4.3693 2.6852 9 7 3.4052 5.6776 0.9026 10 6 3.2037 5.8613 -0.5367 11 6 3.9136 6.7834 1.7182 12 1 3.9970 6.4609 2.7561 13 6 5.2910 7.2057 1.2031 14 6 2.9501 7.9685 1.6281 15 7 1.6001 7.5320 2.0091 16 6 0.6460 8.6465 1.9349 17 6 -0.7245 8.1618 2.3324 18 8 -0.8902 7.0020 2.6462 19 7 -1.7662 9.0170 2.3383 20 6 -3.0131 8.5759 2.6994 21 1 -3.1606 7.5432 2.9788 22 6 -4.0869 9.4576 2.7059 23 7 -5.2820 9.0349 3.0526 24 14 -3.8319 11.2437 2.2220 25 1 -4.0374 11.3943 0.7591 26 1 -4.8055 12.0974 2.9491 27 1 -2.4502 11.6593 2.5732 28 6 2.2844 2.1339 1.0933 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.1714 1.8157 -2.1222 35 1 4.0819 5.5046 -1.0750 36 1 2.3276 5.2968 -0.8559 37 1 3.0518 6.9193 -0.7502 38 1 5.9775 6.3614 1.2672 39 1 5.2076 7.5281 0.1653 40 1 5.6694 8.0281 1.8102 41 1 3.2808 8.7577 2.3032 42 1 2.9345 8.3473 0.6062 43 1 1.6004 7.1173 2.9290 44 1 0.9609 9.4402 2.6124 45 1 0.6144 9.0304 0.9152 46 1 -1.6338 9.9444 2.0870 47 1 -6.0316 9.6506 3.0575 48 1 2.1770 1.8312 2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496207565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:45 Heat of formation + Delta-G solvation = -18.290360 kcal Electronic energy + Delta-G solvation = -29450.057114 eV Core-core repulsion = 25347.791523 eV Total energy + Delta-G solvation = -4102.265591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.12614 -40.69378 -40.22553 -37.85537 -36.22127 -35.97264 -35.44044 -33.76518 -32.68693 -31.22798 -30.36595 -29.09080 -27.64058 -26.62802 -25.37872 -24.46273 -23.99180 -21.96416 -21.62658 -21.28574 -20.39247 -19.98125 -18.43290 -17.93757 -17.68613 -17.04969 -16.86046 -16.59788 -16.42507 -15.99294 -15.56144 -15.51423 -15.26887 -15.09426 -14.91130 -14.69824 -14.62167 -14.33108 -14.31066 -14.03356 -13.79664 -13.49130 -13.26273 -13.16169 -13.08151 -12.98143 -12.84992 -12.76665 -12.48849 -12.42363 -12.21442 -11.98440 -11.77059 -11.53076 -11.20922 -10.78944 -10.62569 -10.46569 -10.26404 -9.72585 -9.35241 -9.25411 -8.42811 -6.04063 0.63210 1.29156 1.35043 1.43968 1.52754 1.75427 1.94583 2.22169 2.22899 2.63512 2.73137 3.13151 3.38486 3.48263 3.76392 3.86146 3.91635 4.08977 4.13393 4.16065 4.26632 4.36547 4.39896 4.42327 4.45262 4.47781 4.55466 4.67168 4.70113 4.78242 4.81080 4.86484 4.94785 5.07228 5.14793 5.21571 5.21907 5.31971 5.50144 5.51625 5.79320 5.89187 6.07489 6.18591 6.31680 6.53464 6.58823 6.86514 6.86568 7.33889 7.37962 7.96086 8.75222 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002968 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.583859 B = 9432.932929 C =11467.503841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.450 5.450 4 C 0.189 3.811 5 N -0.482 5.482 6 C -0.090 4.090 7 C 0.593 3.407 8 O -0.594 6.594 9 N -0.579 5.579 10 C 0.105 3.895 11 C 0.133 3.867 12 H 0.073 0.927 13 C -0.145 4.145 14 C 0.053 3.947 15 N -0.684 5.684 16 C 0.065 3.935 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.590 5.590 20 C -0.331 4.331 21 H 0.050 0.950 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.255 1.255 26 H -0.274 1.274 27 H -0.231 1.231 28 C 0.027 3.973 29 H 0.101 0.899 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.132 0.868 33 H 0.106 0.894 34 H 0.251 0.749 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.094 0.906 43 H 0.336 0.664 44 H 0.077 0.923 45 H 0.117 0.883 46 H 0.390 0.610 47 H 0.280 0.720 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.323 -9.617 -13.078 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.024 4.024 3 N -0.131 5.131 4 C -0.094 4.094 5 N -0.201 5.201 6 C -0.218 4.218 7 C 0.383 3.617 8 O -0.476 6.476 9 N -0.309 5.309 10 C -0.038 4.038 11 C 0.029 3.971 12 H 0.091 0.909 13 C -0.203 4.203 14 C -0.076 4.076 15 N -0.316 5.316 16 C -0.067 4.067 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.460 4.460 21 H 0.068 0.932 22 C -0.214 4.214 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.155 1.155 28 C -0.114 4.114 29 H 0.120 0.880 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.124 0.876 34 H 0.267 0.733 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.153 0.847 44 H 0.095 0.905 45 H 0.135 0.865 46 H 0.226 0.774 47 H 0.089 0.911 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 22.075 -10.108 -13.381 27.722 hybrid contribution -0.914 0.486 1.560 1.872 sum 21.161 -9.622 -11.821 26.079 Atomic orbital electron populations 1.22185 0.94208 1.04355 1.02137 1.22302 0.95394 0.77395 1.07282 1.45749 1.47350 1.14313 1.05702 1.26080 1.01552 0.86694 0.95105 1.70736 1.19874 1.20112 1.09396 1.20502 1.14241 0.95561 0.91463 1.17314 0.75883 0.82651 0.85860 1.90707 1.56676 1.84782 1.15428 1.47433 1.63014 1.10374 1.10035 1.21768 1.02154 1.01677 0.78158 1.21231 0.94031 0.85990 0.95850 0.90905 1.21992 0.93446 1.02022 1.02838 1.22464 0.86703 0.95895 1.02586 1.60004 1.06742 1.29790 1.35017 1.21630 0.88188 0.93191 1.03729 1.21068 0.87501 0.85978 0.81983 1.90563 1.85764 1.20366 1.53387 1.42008 1.07408 1.11358 1.62437 1.18992 0.85078 0.97192 1.44716 0.93154 1.26157 0.93795 1.04938 0.96533 1.69820 1.01050 1.38489 1.48233 0.85316 0.80339 0.75964 0.79576 1.17965 1.19886 1.15452 1.22653 1.02519 0.92036 0.94215 0.88020 0.94262 0.92132 0.84956 0.87586 0.73327 0.92083 0.91297 0.90842 0.92856 0.90586 0.89411 0.92052 0.88787 0.84676 0.90537 0.86532 0.77389 0.91098 0.79833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.24 71.98 0.74 -1.10 16 2 C 0.10 0.81 6.84 86.38 0.59 1.40 16 3 N -0.45 -7.95 2.73 -528.39 -1.44 -9.39 16 4 C 0.19 3.40 12.55 180.10 2.26 5.66 16 5 N -0.48 -12.58 8.03 -188.81 -1.52 -14.09 16 6 C -0.09 -2.81 6.59 40.50 0.27 -2.54 16 7 C 0.59 21.24 7.66 86.64 0.66 21.91 16 8 O -0.59 -24.93 16.23 -4.10 -0.07 -24.99 16 9 N -0.58 -16.95 2.49 -826.56 -2.05 -19.01 16 10 C 0.10 2.58 8.32 127.77 1.06 3.64 16 11 C 0.13 3.30 2.87 44.99 0.13 3.43 16 12 H 0.07 2.20 6.91 -2.39 -0.02 2.19 16 13 C -0.14 -2.42 9.19 71.98 0.66 -1.76 16 14 C 0.05 1.23 4.95 86.30 0.43 1.65 16 15 N -0.68 -23.21 5.85 -517.92 -3.03 -26.24 16 16 C 0.06 2.15 6.17 85.56 0.53 2.68 16 17 C 0.45 21.70 7.82 87.66 0.69 22.38 16 18 O -0.62 -37.25 15.78 -3.05 -0.05 -37.30 16 19 N -0.59 -29.25 5.09 -306.99 -1.56 -30.81 16 20 C -0.33 -20.20 10.16 84.04 0.85 -19.35 16 21 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 22 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 23 N -0.94 -57.81 13.96 21.66 0.30 -57.50 16 24 Si 0.97 39.75 27.74 68.60 1.90 41.65 16 25 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 H -0.23 -8.00 6.52 99.48 0.65 -7.35 16 28 C 0.03 0.70 11.27 83.72 0.94 1.64 16 29 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 33 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.25 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.06 1.33 8.13 -2.38 -0.02 1.31 16 36 H 0.07 2.03 5.87 -2.39 -0.01 2.01 16 37 H 0.07 1.53 6.54 -2.39 -0.02 1.52 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 1.06 7.67 -2.39 -0.02 1.04 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.84 6.86 -2.39 -0.02 1.82 16 43 H 0.34 13.34 8.43 -89.69 -0.76 12.58 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 46 H 0.39 15.89 5.76 -92.71 -0.53 15.35 16 47 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 48 H 0.18 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -93.69 398.14 2.40 -91.29 By element: Atomic # 1 Polarization: 47.56 SS G_CDS: -0.36 Total: 47.20 kcal Atomic # 6 Polarization: 28.92 SS G_CDS: 10.28 Total: 39.20 kcal Atomic # 7 Polarization: -147.74 SS G_CDS: -9.30 Total: -157.04 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -0.11 Total: -62.30 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.90 Total: 41.65 kcal Total: -93.69 2.40 -91.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496207565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.001 kcal (2) G-P(sol) polarization free energy of solvation -93.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds