Wall clock time and date at job start Tue Mar 31 2020 19:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99506 * 2 1 3 5 5 C 1.53005 * 109.46847 * 174.99874 * 4 2 1 6 6 N 1.46899 * 109.46939 * 180.02562 * 5 4 2 7 7 C 1.46897 * 110.99879 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47376 * 180.02562 * 7 6 5 9 9 O 1.21294 * 119.99729 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00439 * 179.97438 * 8 7 6 11 11 C 1.37103 * 120.00023 * 180.02562 * 10 8 7 12 12 H 1.07994 * 120.00264 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99615 * 180.02562 * 11 10 8 14 14 N 1.31416 * 120.00657 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46916 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47365 * 120.00055 * 15 13 11 18 18 H 1.48507 * 109.47043 * 239.99777 * 15 13 11 19 19 N 1.46503 * 109.46836 * 119.99683 * 2 1 3 20 20 C 1.34769 * 120.00207 * 275.00165 * 19 2 1 21 21 O 1.21280 * 120.00091 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.46874 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46971 * 60.00419 * 1 2 3 31 31 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47346 * 294.99714 * 4 2 1 33 33 H 1.08997 * 109.46993 * 55.00376 * 4 2 1 34 34 H 1.08998 * 109.47319 * 300.00945 * 5 4 2 35 35 H 1.09001 * 109.46531 * 60.00153 * 5 4 2 36 36 H 1.00896 * 111.00027 * 56.04841 * 6 5 4 37 37 H 1.09009 * 109.47183 * 300.00218 * 7 6 5 38 38 H 1.09000 * 109.47284 * 59.99951 * 7 6 5 39 39 H 0.96996 * 120.00005 * 359.97438 * 10 8 7 40 40 H 0.96993 * 120.00472 * 180.02562 * 14 13 11 41 41 H 0.97003 * 119.99968 * 95.00155 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.07998 * 125.64430 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0545 -1.3054 -2.5133 7 6 5.5181 -1.2228 -2.6082 8 6 5.9824 -1.9417 -3.8486 9 8 5.1736 -2.4703 -4.5817 10 7 7.2963 -1.9962 -4.1439 11 6 7.7187 -2.6498 -5.2727 12 1 6.9986 -3.1205 -5.9255 13 6 9.0733 -2.7065 -5.5768 14 7 9.9496 -2.1333 -4.7827 15 14 9.6487 -3.5964 -7.1151 16 1 8.4742 -4.1517 -7.8343 17 1 10.3659 -2.6430 -7.9995 18 1 10.5637 -4.7023 -6.7342 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0182 2.3572 21 8 1.8590 1.1586 2.4115 22 6 2.6498 -0.7284 3.5875 23 6 2.6997 0.2397 4.7413 24 6 1.6834 0.5608 5.5645 25 7 2.1360 1.4593 6.4516 26 6 3.3957 1.7028 6.2130 27 7 3.7876 0.9598 5.1556 28 6 5.1259 0.9331 4.5602 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9994 -1.0728 -0.4258 36 1 3.6167 -0.9399 -3.3456 37 1 5.8204 -0.1768 -2.6602 38 1 5.9660 -1.6872 -1.7296 39 1 7.9431 -1.5725 -3.5582 40 1 10.8952 -2.1726 -4.9952 41 1 2.2490 -1.6318 1.1527 42 1 3.6490 -1.1203 3.3980 43 1 1.9775 -1.5507 3.8327 44 1 0.6790 0.1670 5.5162 45 1 4.0209 2.3860 6.7686 46 1 5.7250 0.1637 5.0472 47 1 5.6027 1.9041 4.6945 48 1 5.0457 0.7118 3.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497304965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:14 Heat of formation + Delta-G solvation = -17.967549 kcal Electronic energy + Delta-G solvation = -28125.629183 eV Core-core repulsion = 24023.377590 eV Total energy + Delta-G solvation = -4102.251593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.37933 -40.03953 -38.37375 -37.01147 -35.04810 -34.34664 -33.87582 -32.87825 -31.49971 -31.22083 -29.32037 -27.44883 -27.20730 -26.27208 -24.19041 -22.57551 -21.81321 -21.67521 -20.85240 -20.07555 -19.28221 -17.94982 -17.55580 -17.39411 -16.55122 -16.16929 -15.81401 -15.75103 -15.54452 -14.73104 -14.64449 -14.47038 -14.20219 -13.96173 -13.89272 -13.78490 -13.68162 -13.36102 -13.20886 -13.13545 -12.95150 -12.90682 -12.39137 -12.31831 -12.27636 -11.71325 -11.55324 -11.32159 -11.30029 -11.09863 -10.97657 -10.37978 -10.26846 -10.24352 -10.16623 -9.81735 -9.56570 -9.36799 -8.61035 -8.52614 -8.13147 -8.00816 -6.46357 -3.87298 1.68204 2.33308 2.47171 2.82993 3.07993 3.12847 3.23739 3.30929 3.85441 3.98548 4.15349 4.21077 4.33054 4.45877 4.52931 4.62815 4.71778 4.77067 4.81090 4.88658 4.89553 5.02510 5.06880 5.14619 5.19426 5.26655 5.31129 5.46379 5.48163 5.52608 5.61890 5.73218 5.84889 5.88763 5.94327 6.02517 6.03599 6.21056 6.25587 6.46720 6.89565 7.13793 7.20367 7.51117 7.58464 7.82333 7.94295 8.01879 8.56269 9.13359 9.49367 10.00555 10.71416 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.001836 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.878476 B =15244.253596 C =16799.412614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.086 0.914 4 C -0.126 4.126 5 C 0.060 3.940 6 N -0.670 5.670 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 N -0.724 5.724 20 C 0.512 3.488 21 O -0.528 6.528 22 C -0.066 4.066 23 C -0.009 4.009 24 C -0.009 4.009 25 N -0.495 5.495 26 C 0.183 3.817 27 N -0.454 5.454 28 C 0.070 3.930 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.350 0.650 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.402 0.598 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.166 0.834 45 H 0.204 0.796 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.775 4.999 19.713 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.105 0.895 4 C -0.164 4.164 5 C -0.070 4.070 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.122 0.878 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.207 1.207 19 N -0.377 5.377 20 C 0.297 3.703 21 O -0.404 6.404 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.158 4.158 25 N -0.213 5.213 26 C -0.099 4.099 27 N -0.137 5.137 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.169 0.831 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.237 0.763 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.183 0.817 45 H 0.221 0.779 46 H 0.098 0.902 47 H 0.108 0.892 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.620 5.256 20.082 24.293 hybrid contribution 1.711 -0.006 -1.327 2.166 sum -10.908 5.251 18.755 22.323 Atomic orbital electron populations 1.22157 0.95004 1.02296 1.02594 1.20966 0.94092 0.97416 0.83569 0.89546 1.21883 0.95578 1.02055 0.96886 1.21950 0.94556 0.96066 0.94391 1.60081 1.04948 1.59901 1.05282 1.21659 0.88910 0.98723 0.98868 1.19808 0.83422 0.86159 0.88061 1.90524 1.53377 1.50507 1.52311 1.41876 1.05432 1.48934 1.23805 1.19761 0.92005 1.30250 1.00854 0.87830 1.25274 0.95627 0.97813 0.99288 1.69616 1.02499 1.44334 1.37882 0.85794 0.78782 0.78843 0.80891 1.19189 1.20751 1.20724 1.46137 1.67691 1.14246 1.09609 1.20498 0.77984 0.87504 0.84294 1.90751 1.49056 1.15844 1.84708 1.20036 1.04277 0.96826 0.89626 1.20375 0.88664 1.02330 1.00976 1.21967 0.98859 0.99845 0.95089 1.70273 1.08534 1.16241 1.26205 1.24897 0.93451 0.99916 0.91635 1.45221 1.10095 1.33008 1.25398 1.22066 0.81014 1.04348 0.99866 0.92134 0.91510 0.92254 0.90111 0.90178 0.95650 0.91300 0.83122 0.93970 0.89753 0.77490 0.91903 0.76309 0.88155 0.86454 0.81668 0.77902 0.90236 0.89163 0.89777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.48 37.16 0.35 -0.93 16 2 C 0.14 1.21 2.58 -67.93 -0.17 1.03 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C -0.13 -1.10 5.01 -26.73 -0.13 -1.23 16 5 C 0.06 0.65 5.57 -3.82 -0.02 0.63 16 6 N -0.67 -10.07 6.13 -115.06 -0.70 -10.78 16 7 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 8 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 9 O -0.58 -15.55 15.78 5.55 0.09 -15.47 16 10 N -0.56 -14.04 5.29 -10.97 -0.06 -14.10 16 11 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 12 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 15 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 19 N -0.72 -5.21 4.53 -53.81 -0.24 -5.45 16 20 C 0.51 4.60 7.79 -10.99 -0.09 4.51 16 21 O -0.53 -7.14 15.70 5.56 0.09 -7.05 16 22 C -0.07 -0.42 5.88 -29.04 -0.17 -0.59 16 23 C -0.01 -0.08 5.45 -81.60 -0.44 -0.52 16 24 C -0.01 -0.10 11.79 -17.81 -0.21 -0.31 16 25 N -0.49 -6.02 11.25 -14.67 -0.17 -6.19 16 26 C 0.18 1.70 12.56 -90.37 -1.14 0.56 16 27 N -0.45 -3.84 3.15 -121.36 -0.38 -4.22 16 28 C 0.07 0.34 10.83 59.85 0.65 0.99 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.70 7.75 -51.93 -0.40 0.30 16 36 H 0.35 5.49 8.43 -39.29 -0.33 5.15 16 37 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 40 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.40 2.04 8.60 -40.82 -0.35 1.69 16 42 H 0.10 0.44 7.63 -51.93 -0.40 0.04 16 43 H 0.12 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.20 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.43 7.67 -51.93 -0.40 0.03 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -36.83 408.56 -8.86 -45.68 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -7.60 Total: 12.00 kcal Atomic # 6 Polarization: 8.88 SS G_CDS: -1.73 Total: 7.14 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: -0.83 Total: -64.20 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: 0.17 Total: -22.51 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.83 -8.86 -45.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497304965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.716 kcal (2) G-P(sol) polarization free energy of solvation -36.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds