Wall clock time and date at job start Tue Mar 31 2020 19:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47322 * 2 1 4 4 C 1.53001 * 109.47023 * 239.99506 * 2 1 3 5 5 C 1.53005 * 109.46847 * 174.99874 * 4 2 1 6 6 N 1.46899 * 109.46939 * 180.02562 * 5 4 2 7 7 C 1.46897 * 110.99879 * 180.02562 * 6 5 4 8 8 C 1.50693 * 109.47376 * 180.02562 * 7 6 5 9 9 O 1.21294 * 119.99729 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00439 * 179.97438 * 8 7 6 11 11 C 1.37103 * 120.00023 * 180.02562 * 10 8 7 12 12 H 1.07994 * 120.00264 * 0.02562 * 11 10 8 13 13 C 1.38945 * 119.99615 * 180.02562 * 11 10 8 14 14 N 1.31416 * 120.00657 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99855 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46916 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.47365 * 120.00055 * 15 13 11 18 18 H 1.48507 * 109.47043 * 239.99777 * 15 13 11 19 19 N 1.46503 * 109.46836 * 119.99683 * 2 1 3 20 20 C 1.34769 * 120.00207 * 275.00165 * 19 2 1 21 21 O 1.21280 * 120.00091 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.08998 * 109.46874 * 300.00158 * 1 2 3 30 30 H 1.09001 * 109.46971 * 60.00419 * 1 2 3 31 31 H 1.09002 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47346 * 294.99714 * 4 2 1 33 33 H 1.08997 * 109.46993 * 55.00376 * 4 2 1 34 34 H 1.08998 * 109.47319 * 300.00945 * 5 4 2 35 35 H 1.09001 * 109.46531 * 60.00153 * 5 4 2 36 36 H 1.00896 * 111.00027 * 56.04841 * 6 5 4 37 37 H 1.09009 * 109.47183 * 300.00218 * 7 6 5 38 38 H 1.09000 * 109.47284 * 59.99951 * 7 6 5 39 39 H 0.96996 * 120.00005 * 359.97438 * 10 8 7 40 40 H 0.96993 * 120.00472 * 180.02562 * 14 13 11 41 41 H 0.97003 * 119.99968 * 95.00155 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.07998 * 125.64430 * 179.97438 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5649 -0.6134 -1.3136 6 7 4.0545 -1.3054 -2.5133 7 6 5.5181 -1.2228 -2.6082 8 6 5.9824 -1.9417 -3.8486 9 8 5.1736 -2.4703 -4.5817 10 7 7.2963 -1.9962 -4.1439 11 6 7.7187 -2.6498 -5.2727 12 1 6.9986 -3.1205 -5.9255 13 6 9.0733 -2.7065 -5.5768 14 7 9.9496 -2.1333 -4.7827 15 14 9.6487 -3.5964 -7.1151 16 1 8.4742 -4.1517 -7.8343 17 1 10.3659 -2.6430 -7.9995 18 1 10.5637 -4.7023 -6.7342 19 7 2.0183 -0.6906 1.1963 20 6 2.1470 -0.0182 2.3572 21 8 1.8590 1.1586 2.4115 22 6 2.6498 -0.7284 3.5875 23 6 2.6997 0.2397 4.7413 24 6 1.6834 0.5608 5.5645 25 7 2.1360 1.4593 6.4516 26 6 3.3957 1.7028 6.2130 27 7 3.7876 0.9598 5.1556 28 6 5.1259 0.9331 4.5602 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 -1.2055 33 1 1.6054 -0.2619 -2.1369 34 1 3.8533 0.4369 -1.3572 35 1 3.9994 -1.0728 -0.4258 36 1 3.6167 -0.9399 -3.3456 37 1 5.8204 -0.1768 -2.6602 38 1 5.9660 -1.6872 -1.7296 39 1 7.9431 -1.5725 -3.5582 40 1 10.8952 -2.1726 -4.9952 41 1 2.2490 -1.6318 1.1527 42 1 3.6490 -1.1203 3.3980 43 1 1.9775 -1.5507 3.8327 44 1 0.6790 0.1670 5.5162 45 1 4.0209 2.3860 6.7686 46 1 5.7250 0.1637 5.0472 47 1 5.6027 1.9041 4.6945 48 1 5.0457 0.7118 3.4959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497304965.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:13 Heat of formation + Delta-G solvation = -45.543747 kcal Electronic energy + Delta-G solvation = -28126.824977 eV Core-core repulsion = 24023.377590 eV Total energy + Delta-G solvation = -4103.447387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.02978 -40.77051 -40.14406 -37.94659 -36.27726 -35.68186 -34.95384 -33.56114 -33.26716 -32.18263 -30.30475 -28.02392 -27.78793 -27.73451 -25.78698 -23.49472 -22.58501 -22.35421 -21.57138 -21.07483 -20.67670 -19.90864 -18.25262 -18.00540 -17.81796 -17.25085 -16.94587 -16.49000 -16.39710 -16.31095 -15.93074 -15.47760 -15.26639 -15.09136 -15.02167 -14.67336 -14.54009 -14.33123 -13.99576 -13.81153 -13.69589 -13.63884 -13.49786 -13.36475 -13.24392 -12.94936 -12.92750 -12.77790 -12.41465 -12.19845 -12.11241 -12.09762 -11.75736 -11.51591 -10.99122 -10.91525 -10.46026 -10.35664 -10.06392 -10.01821 -9.34255 -9.29774 -8.47355 -5.95974 1.03247 1.36585 1.42373 1.56278 1.66914 1.93197 2.04756 2.14886 2.28856 2.41602 2.89260 3.20038 3.49068 3.58593 3.89039 3.91405 3.94494 3.99320 4.11473 4.12284 4.17598 4.32896 4.42174 4.43435 4.44177 4.51302 4.53719 4.59242 4.64084 4.69319 4.70674 4.83832 4.85554 4.92353 5.08971 5.22636 5.33027 5.40101 5.41153 5.58701 5.79784 5.88753 6.10127 6.30883 6.39106 6.59549 6.61592 7.12369 7.13369 7.31446 7.55936 8.11063 8.70173 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015174 B = 0.001836 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.878476 B =15244.253596 C =16799.412614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.066 0.934 4 C -0.114 4.114 5 C 0.063 3.937 6 N -0.681 5.681 7 C 0.065 3.935 8 C 0.437 3.563 9 O -0.623 6.623 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.079 0.921 13 C -0.014 4.014 14 N -0.920 5.920 15 Si 0.992 3.008 16 H -0.273 1.273 17 H -0.272 1.272 18 H -0.271 1.271 19 N -0.712 5.712 20 C 0.514 3.486 21 O -0.579 6.579 22 C -0.060 4.060 23 C -0.010 4.010 24 C -0.043 4.043 25 N -0.539 5.539 26 C 0.176 3.824 27 N -0.456 5.456 28 C 0.064 3.936 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.082 0.918 36 H 0.344 0.656 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.416 0.584 42 H 0.127 0.873 43 H 0.144 0.856 44 H 0.168 0.832 45 H 0.234 0.766 46 H 0.099 0.901 47 H 0.104 0.896 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 4.262 20.002 23.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.066 4.066 6 N -0.313 5.313 7 C -0.067 4.067 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.097 0.903 13 C -0.213 4.213 14 N -0.561 5.561 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.197 1.197 18 H -0.196 1.196 19 N -0.365 5.365 20 C 0.301 3.699 21 O -0.458 6.458 22 C -0.101 4.101 23 C -0.126 4.126 24 C -0.191 4.191 25 N -0.258 5.258 26 C -0.106 4.106 27 N -0.138 5.138 28 C -0.077 4.077 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.044 0.956 35 H 0.100 0.900 36 H 0.162 0.838 37 H 0.079 0.921 38 H 0.124 0.876 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.253 0.747 42 H 0.145 0.855 43 H 0.162 0.838 44 H 0.185 0.815 45 H 0.250 0.750 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.578 4.497 20.385 23.871 hybrid contribution 1.364 0.250 -1.398 1.969 sum -10.214 4.747 18.987 22.076 Atomic orbital electron populations 1.22103 0.94540 1.02888 1.02029 1.20801 0.94347 0.96448 0.83818 0.91532 1.21771 0.94061 1.02405 0.97013 1.22026 0.95799 0.95777 0.92956 1.60109 1.03694 1.61065 1.06412 1.21526 0.90283 0.98907 0.96009 1.20908 0.82394 0.85035 0.89202 1.90493 1.54222 1.52042 1.54176 1.41946 1.06381 1.49275 1.23492 1.19705 0.92339 1.32047 1.02172 0.90294 1.26036 0.95212 0.98106 1.01974 1.69670 1.02919 1.44565 1.38963 0.84876 0.78059 0.78024 0.77411 1.19781 1.19689 1.19596 1.46033 1.66807 1.14797 1.08833 1.20902 0.77036 0.86883 0.85116 1.90741 1.51414 1.18144 1.85478 1.20138 1.06329 0.96388 0.87198 1.20752 0.88479 1.02308 1.01080 1.22223 0.99823 1.00858 0.96195 1.70201 1.10315 1.17572 1.27687 1.25503 0.93115 1.00022 0.91966 1.45475 1.11084 1.32220 1.25035 1.22326 0.79567 1.06032 0.99812 0.93867 0.90950 0.91026 0.89521 0.90043 0.95565 0.89985 0.83799 0.92057 0.87567 0.76970 0.91303 0.74653 0.85458 0.83826 0.81461 0.74978 0.88214 0.87729 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.48 71.98 0.68 -1.62 16 2 C 0.15 2.30 2.58 44.99 0.12 2.41 16 3 H 0.07 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.11 -1.74 5.01 30.60 0.15 -1.59 16 5 C 0.06 1.22 5.57 86.31 0.48 1.70 16 6 N -0.68 -19.17 6.13 -517.93 -3.17 -22.35 16 7 C 0.07 2.08 6.17 85.56 0.53 2.60 16 8 C 0.44 20.06 7.82 87.65 0.69 20.75 16 9 O -0.62 -33.57 15.78 -3.07 -0.05 -33.62 16 10 N -0.57 -28.64 5.29 -306.99 -1.62 -30.27 16 11 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 12 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 13 C -0.01 -0.71 5.50 84.92 0.47 -0.25 16 14 N -0.92 -48.62 13.05 21.66 0.28 -48.34 16 15 Si 0.99 42.10 29.55 68.60 2.03 44.13 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 19 N -0.71 -8.70 4.53 -442.53 -2.00 -10.70 16 20 C 0.51 8.47 7.79 87.66 0.68 9.15 16 21 O -0.58 -15.56 15.70 -3.03 -0.05 -15.61 16 22 C -0.06 -0.63 5.88 29.10 0.17 -0.45 16 23 C -0.01 -0.18 5.45 40.95 0.22 0.04 16 24 C -0.04 -0.97 11.79 83.52 0.98 0.01 16 25 N -0.54 -13.42 11.25 -200.31 -2.25 -15.67 16 26 C 0.18 3.17 12.56 180.26 2.26 5.43 16 27 N -0.46 -7.10 3.15 -537.88 -1.70 -8.80 16 28 C 0.06 0.48 10.83 127.77 1.38 1.86 16 29 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.08 1.38 7.75 -2.39 -0.02 1.36 16 36 H 0.34 10.39 8.43 -89.70 -0.76 9.64 16 37 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 39 H 0.40 18.71 7.90 -92.71 -0.73 17.97 16 40 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 41 H 0.42 2.89 8.60 -92.71 -0.80 2.09 16 42 H 0.13 0.66 7.63 -2.39 -0.02 0.64 16 43 H 0.14 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 47 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.08 0.66 7.67 -2.38 -0.02 0.64 16 Total: -1.00 -81.84 408.56 -0.19 -82.03 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -1.29 Total: 36.90 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 9.64 Total: 22.30 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -10.47 Total: -136.13 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -0.10 Total: -49.22 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -81.84 -0.19 -82.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497304965.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.484 kcal (2) G-P(sol) polarization free energy of solvation -81.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds