Wall clock time and date at job start Tue Mar 31 2020 19:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47312 * 120.00042 * 2 1 3 5 5 C 1.52997 * 109.47231 * 185.00170 * 4 2 1 6 6 N 1.46895 * 109.47167 * 180.02562 * 5 4 2 7 7 C 1.46904 * 111.00487 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47485 * 179.97438 * 7 6 5 9 9 O 1.21289 * 119.99880 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99646 * 179.97438 * 8 7 6 11 11 C 1.37108 * 119.99791 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99458 * 0.02562 * 11 10 8 13 13 C 1.38944 * 119.99779 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00449 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46960 * 359.97438 * 15 13 11 17 17 H 1.48488 * 109.47384 * 119.99630 * 15 13 11 18 18 H 1.48498 * 109.46777 * 240.00203 * 15 13 11 19 19 N 1.46503 * 109.47299 * 240.00153 * 2 1 3 20 20 C 1.34769 * 120.00207 * 84.99975 * 19 2 1 21 21 O 1.21283 * 120.00415 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47149 * 299.99772 * 1 2 3 30 30 H 1.09002 * 109.47103 * 60.00208 * 1 2 3 31 31 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46773 * 305.00282 * 4 2 1 33 33 H 1.09002 * 109.47253 * 65.00021 * 4 2 1 34 34 H 1.09007 * 109.47197 * 299.99511 * 5 4 2 35 35 H 1.09002 * 109.47124 * 59.99772 * 5 4 2 36 36 H 1.00900 * 111.00153 * 303.95268 * 6 5 4 37 37 H 1.09003 * 109.46893 * 300.00116 * 7 6 5 38 38 H 1.09003 * 109.47197 * 59.99402 * 7 6 5 39 39 H 0.97002 * 120.00913 * 0.02562 * 10 8 7 40 40 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99968 * 264.99964 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.08005 * 125.64657 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0546 -1.3063 2.5127 7 6 5.5181 -1.2227 2.6084 8 6 5.9825 -1.9426 3.8482 9 8 5.1738 -2.4727 4.5804 10 7 7.2964 -1.9973 4.1432 11 6 7.7189 -2.6519 5.2715 12 1 6.9988 -3.1238 5.9234 13 6 9.0734 -2.7078 5.5760 14 7 9.9495 -2.1331 4.7829 15 14 9.6491 -3.6002 7.1128 16 1 8.4747 -4.1571 7.8311 17 1 10.5651 -4.7044 6.7302 18 1 10.3649 -2.6478 7.9993 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4118 22 6 2.6489 -0.7288 -3.5877 23 6 2.7004 0.2397 -4.7411 24 6 3.7087 1.0814 -5.0383 25 7 3.3618 1.7743 -6.1332 26 6 2.1792 1.3898 -6.5291 27 7 1.7321 0.4311 -5.6896 28 6 0.4485 -0.2698 -5.7753 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.6168 -0.9414 3.3454 37 1 5.9666 -1.6857 1.7294 38 1 5.8196 -0.1766 2.6616 39 1 7.9431 -1.5731 3.5579 40 1 10.8950 -2.1718 4.9957 41 1 2.2491 -1.6318 -1.1526 42 1 1.9761 -1.5506 -3.8326 43 1 3.6481 -1.1213 -3.3986 44 1 4.6329 1.1835 -4.4891 45 1 1.6464 1.7746 -7.3861 46 1 0.5629 -1.1639 -6.3882 47 1 -0.2948 0.3874 -6.2266 48 1 0.1224 -0.5543 -4.7749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497304966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:16 Heat of formation + Delta-G solvation = -17.301084 kcal Electronic energy + Delta-G solvation = -28015.031909 eV Core-core repulsion = 23912.809216 eV Total energy + Delta-G solvation = -4102.222693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38822 -40.03998 -38.33325 -36.99772 -35.02093 -34.37796 -33.83887 -32.88154 -31.48912 -31.19095 -29.31103 -27.48458 -27.22937 -26.24279 -24.16008 -22.55747 -21.79441 -21.68303 -20.85265 -20.08779 -19.24114 -17.91150 -17.55809 -17.41258 -16.53930 -16.13901 -15.91224 -15.68285 -15.54712 -14.68113 -14.57973 -14.41067 -14.34388 -13.93099 -13.86698 -13.77518 -13.66406 -13.39189 -13.23168 -13.13939 -13.00234 -12.88888 -12.40350 -12.31875 -12.25647 -11.68206 -11.51876 -11.30122 -11.27538 -11.07616 -10.95945 -10.35084 -10.24021 -10.23349 -10.16660 -9.83398 -9.53047 -9.37040 -8.61215 -8.48558 -8.08937 -7.97064 -6.42588 -3.83601 1.66937 2.32905 2.44231 2.82906 3.08375 3.15755 3.26368 3.33508 3.89508 4.01596 4.14487 4.23716 4.25259 4.44216 4.53326 4.59332 4.63572 4.77762 4.81666 4.84688 4.91499 4.96248 5.09335 5.17198 5.22271 5.27813 5.31310 5.46231 5.48876 5.54057 5.62764 5.77924 5.86890 5.89088 5.96507 6.01554 6.04011 6.24591 6.26319 6.47359 6.88350 7.17920 7.20364 7.54548 7.62669 7.82503 7.94189 8.05604 8.60138 9.16956 9.53393 10.04567 10.75178 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.001728 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.412442 B =16196.825576 C =17422.336027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.125 4.125 5 C 0.059 3.941 6 N -0.670 5.670 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.584 6.584 10 N -0.564 5.564 11 C -0.300 4.300 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.724 5.724 20 C 0.512 3.488 21 O -0.528 6.528 22 C -0.066 4.066 23 C -0.009 4.009 24 C -0.006 4.006 25 N -0.493 5.493 26 C 0.182 3.818 27 N -0.456 5.456 28 C 0.072 3.928 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.027 0.973 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.402 0.598 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.168 0.832 45 H 0.204 0.796 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.317 3.080 -21.696 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.039 3.961 3 H 0.106 0.894 4 C -0.163 4.163 5 C -0.071 4.071 6 N -0.302 5.302 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.468 6.468 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.377 5.377 20 C 0.297 3.703 21 O -0.404 6.404 22 C -0.107 4.107 23 C -0.124 4.124 24 C -0.155 4.155 25 N -0.211 5.211 26 C -0.100 4.100 27 N -0.140 5.140 28 C -0.071 4.071 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.226 0.774 40 H 0.081 0.919 41 H 0.237 0.763 42 H 0.117 0.883 43 H 0.137 0.863 44 H 0.185 0.815 45 H 0.221 0.779 46 H 0.096 0.904 47 H 0.107 0.893 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.513 3.503 -21.899 29.540 hybrid contribution 0.494 -0.315 1.008 1.166 sum -19.019 3.188 -20.890 28.430 Atomic orbital electron populations 1.22149 0.95175 1.02149 1.02470 1.20972 0.93903 0.97592 0.83640 0.89400 1.21875 0.95721 1.01947 0.96805 1.21959 0.94425 0.96213 0.94468 1.60103 1.04978 1.59846 1.05268 1.21667 0.88881 0.98791 0.98881 1.19809 0.83410 0.86140 0.88047 1.90518 1.53398 1.50527 1.52382 1.41881 1.05451 1.48874 1.23841 1.19758 0.92005 1.30215 1.00933 0.87853 1.25271 0.95633 0.97818 0.99268 1.69617 1.02509 1.44261 1.37872 0.85795 0.78761 0.78849 0.80906 1.19217 1.20734 1.20768 1.46133 1.67676 1.14236 1.09621 1.20499 0.77900 0.87502 0.84378 1.90752 1.49025 1.15764 1.84817 1.20036 1.04937 0.96390 0.89363 1.20373 0.91885 1.05027 0.95097 1.22026 1.00074 0.96591 0.96785 1.70285 1.12005 1.25689 1.13093 1.24897 0.93935 0.92531 0.98629 1.45198 1.15290 1.31029 1.22440 1.22024 0.83131 0.97878 1.04086 0.91463 0.92399 0.92341 0.90213 0.90185 0.91161 0.95515 0.83206 0.89669 0.93894 0.77446 0.91897 0.76308 0.88331 0.86278 0.81496 0.77934 0.90390 0.89289 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.14 1.20 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 4 C -0.13 -1.10 5.01 -26.73 -0.13 -1.24 16 5 C 0.06 0.66 5.57 -3.83 -0.02 0.64 16 6 N -0.67 -10.30 6.13 -115.06 -0.70 -11.00 16 7 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 8 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 9 O -0.58 -15.75 15.78 5.55 0.09 -15.66 16 10 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 11 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 12 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 13 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 14 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 15 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 16 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 N -0.72 -5.20 4.53 -53.81 -0.24 -5.45 16 20 C 0.51 4.59 7.79 -10.99 -0.09 4.51 16 21 O -0.53 -7.13 15.70 5.56 0.09 -7.04 16 22 C -0.07 -0.42 5.88 -29.04 -0.17 -0.59 16 23 C -0.01 -0.09 5.45 -81.60 -0.44 -0.53 16 24 C -0.01 -0.07 11.79 -17.81 -0.21 -0.28 16 25 N -0.49 -6.10 11.25 -14.66 -0.16 -6.27 16 26 C 0.18 1.64 12.56 -90.37 -1.14 0.51 16 27 N -0.46 -3.62 3.15 -121.36 -0.38 -4.01 16 28 C 0.07 0.27 10.83 59.85 0.65 0.91 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.75 7.75 -51.93 -0.40 0.34 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 5.57 8.43 -39.29 -0.33 5.24 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.40 2.04 8.60 -40.82 -0.35 1.68 16 42 H 0.10 0.37 7.63 -51.93 -0.40 -0.03 16 43 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.17 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.20 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 48 H 0.08 0.30 7.67 -51.93 -0.40 -0.10 16 LS Contribution 408.56 15.07 6.16 6.16 Total: -1.00 -37.35 408.56 -8.86 -46.21 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.60 Total: 12.04 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: -1.73 Total: 7.18 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: -0.83 Total: -64.84 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: 0.17 Total: -22.70 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.35 -8.86 -46.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497304966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.910 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds