Wall clock time and date at job start Tue Mar 31 2020 19:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47438 * 2 1 4 4 C 1.53003 * 109.47312 * 120.00042 * 2 1 3 5 5 C 1.52997 * 109.47231 * 185.00170 * 4 2 1 6 6 N 1.46895 * 109.47167 * 180.02562 * 5 4 2 7 7 C 1.46904 * 111.00487 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47485 * 179.97438 * 7 6 5 9 9 O 1.21289 * 119.99880 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99646 * 179.97438 * 8 7 6 11 11 C 1.37108 * 119.99791 * 179.97438 * 10 8 7 12 12 H 1.07994 * 119.99458 * 0.02562 * 11 10 8 13 13 C 1.38944 * 119.99779 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00449 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99856 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46960 * 359.97438 * 15 13 11 17 17 H 1.48488 * 109.47384 * 119.99630 * 15 13 11 18 18 H 1.48498 * 109.46777 * 240.00203 * 15 13 11 19 19 N 1.46503 * 109.47299 * 240.00153 * 2 1 3 20 20 C 1.34769 * 120.00207 * 84.99975 * 19 2 1 21 21 O 1.21283 * 120.00415 * 359.97438 * 20 19 2 22 22 C 1.50698 * 120.00252 * 180.02562 * 20 19 2 23 23 C 1.50697 * 109.47436 * 180.02562 * 22 20 19 24 24 C 1.34669 * 126.59585 * 85.16051 * 23 22 20 25 25 N 1.34133 * 108.02235 * 180.28483 * 24 23 22 26 26 C 1.30502 * 109.25197 * 359.73051 * 25 24 23 27 27 N 1.35041 * 108.70384 * 0.02562 * 26 25 24 28 28 C 1.46499 * 126.39764 * 180.02562 * 27 26 25 29 29 H 1.09001 * 109.47149 * 299.99772 * 1 2 3 30 30 H 1.09002 * 109.47103 * 60.00208 * 1 2 3 31 31 H 1.09008 * 109.46839 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46773 * 305.00282 * 4 2 1 33 33 H 1.09002 * 109.47253 * 65.00021 * 4 2 1 34 34 H 1.09007 * 109.47197 * 299.99511 * 5 4 2 35 35 H 1.09002 * 109.47124 * 59.99772 * 5 4 2 36 36 H 1.00900 * 111.00153 * 303.95268 * 6 5 4 37 37 H 1.09003 * 109.46893 * 300.00116 * 7 6 5 38 38 H 1.09003 * 109.47197 * 59.99402 * 7 6 5 39 39 H 0.97002 * 120.00913 * 0.02562 * 10 8 7 40 40 H 0.97000 * 120.00392 * 179.97438 * 14 13 11 41 41 H 0.97003 * 119.99968 * 264.99964 * 19 2 1 42 42 H 1.08994 * 109.47477 * 59.99406 * 22 20 19 43 43 H 1.09007 * 109.47124 * 299.99518 * 22 20 19 44 44 H 1.07993 * 125.98713 * 0.05405 * 24 23 22 45 45 H 1.08005 * 125.64657 * 180.02562 * 26 25 24 46 46 H 1.09002 * 109.47391 * 90.01916 * 28 27 26 47 47 H 1.09001 * 109.46813 * 330.01972 * 28 27 26 48 48 H 1.09004 * 109.47041 * 210.02099 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3137 6 7 4.0546 -1.3063 2.5127 7 6 5.5181 -1.2227 2.6084 8 6 5.9825 -1.9426 3.8482 9 8 5.1738 -2.4727 4.5804 10 7 7.2964 -1.9973 4.1432 11 6 7.7189 -2.6519 5.2715 12 1 6.9988 -3.1238 5.9234 13 6 9.0734 -2.7078 5.5760 14 7 9.9495 -2.1331 4.7829 15 14 9.6491 -3.6002 7.1128 16 1 8.4747 -4.1571 7.8311 17 1 10.5651 -4.7044 6.7302 18 1 10.3649 -2.6478 7.9993 19 7 2.0184 -0.6906 -1.1962 20 6 2.1471 -0.0183 -2.3571 21 8 1.8582 1.1584 -2.4118 22 6 2.6489 -0.7288 -3.5877 23 6 2.7004 0.2397 -4.7411 24 6 3.7087 1.0814 -5.0383 25 7 3.3618 1.7743 -6.1332 26 6 2.1792 1.3898 -6.5291 27 7 1.7321 0.4311 -5.6896 28 6 0.4485 -0.2698 -5.7753 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7716 1.2056 34 1 3.9995 -1.0728 0.4260 35 1 3.8532 0.4370 1.3573 36 1 3.6168 -0.9414 3.3454 37 1 5.9666 -1.6857 1.7294 38 1 5.8196 -0.1766 2.6616 39 1 7.9431 -1.5731 3.5579 40 1 10.8950 -2.1718 4.9957 41 1 2.2491 -1.6318 -1.1526 42 1 1.9761 -1.5506 -3.8326 43 1 3.6481 -1.1213 -3.3986 44 1 4.6329 1.1835 -4.4891 45 1 1.6464 1.7746 -7.3861 46 1 0.5629 -1.1639 -6.3882 47 1 -0.2948 0.3874 -6.2266 48 1 0.1224 -0.5543 -4.7749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497304966.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:42:16 Heat of formation + Delta-G solvation = -45.517533 kcal Electronic energy + Delta-G solvation = -28016.255466 eV Core-core repulsion = 23912.809216 eV Total energy + Delta-G solvation = -4103.446250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.02961 -40.77111 -40.14220 -37.94525 -36.27568 -35.67891 -34.95448 -33.56218 -33.26606 -32.18281 -30.30509 -28.02867 -27.78144 -27.72907 -25.78575 -23.49331 -22.58074 -22.36137 -21.56980 -21.07227 -20.67700 -19.90406 -18.25477 -18.00256 -17.81525 -17.24882 -16.94566 -16.49915 -16.45109 -16.26653 -15.92919 -15.42584 -15.30608 -15.08320 -14.94943 -14.77147 -14.51636 -14.34319 -13.97027 -13.83674 -13.68430 -13.64413 -13.49588 -13.36828 -13.20779 -12.96179 -12.92763 -12.77428 -12.41094 -12.19950 -12.10646 -12.09357 -11.75782 -11.51246 -10.98729 -10.91329 -10.45310 -10.35414 -10.06399 -10.01741 -9.34606 -9.30333 -8.46780 -5.95766 1.02860 1.37126 1.42526 1.56780 1.66655 1.93382 2.04888 2.15063 2.29255 2.41487 2.89390 3.20486 3.49409 3.58553 3.89140 3.91710 3.94883 4.00151 4.10238 4.12022 4.17964 4.33368 4.43191 4.43772 4.44390 4.51004 4.54359 4.60127 4.63450 4.70101 4.70780 4.84136 4.85987 4.92162 5.09138 5.21675 5.32326 5.38834 5.41303 5.58529 5.79178 5.88702 6.09868 6.32345 6.39732 6.59649 6.61497 7.12437 7.13875 7.31327 7.56085 8.10907 8.70801 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.001728 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.412442 B =16196.825576 C =17422.336027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 H 0.065 0.935 4 C -0.113 4.113 5 C 0.061 3.939 6 N -0.679 5.679 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.334 4.334 12 H 0.080 0.920 13 C -0.014 4.014 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.272 1.272 19 N -0.711 5.711 20 C 0.514 3.486 21 O -0.579 6.579 22 C -0.060 4.060 23 C -0.008 4.008 24 C -0.047 4.047 25 N -0.541 5.541 26 C 0.177 3.823 27 N -0.456 5.456 28 C 0.064 3.936 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.344 0.656 37 H 0.105 0.895 38 H 0.061 0.939 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.416 0.584 42 H 0.133 0.867 43 H 0.139 0.861 44 H 0.163 0.837 45 H 0.236 0.764 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.328 1.762 -22.418 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.083 0.917 4 C -0.152 4.152 5 C -0.068 4.068 6 N -0.311 5.311 7 C -0.069 4.069 8 C 0.225 3.775 9 O -0.509 6.509 10 N -0.211 5.211 11 C -0.463 4.463 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.365 5.365 20 C 0.301 3.699 21 O -0.458 6.458 22 C -0.100 4.100 23 C -0.124 4.124 24 C -0.195 4.195 25 N -0.260 5.260 26 C -0.105 4.105 27 N -0.138 5.138 28 C -0.077 4.077 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.162 0.838 37 H 0.123 0.877 38 H 0.079 0.921 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.180 0.820 45 H 0.252 0.748 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.532 2.154 -22.643 30.641 hybrid contribution 0.736 0.110 1.198 1.410 sum -19.796 2.265 -21.445 29.273 Atomic orbital electron populations 1.22081 0.94262 1.02916 1.02040 1.20815 0.94504 0.96427 0.83810 0.91693 1.21767 0.93871 1.02451 0.97074 1.22045 0.95983 0.95752 0.92977 1.60134 1.03607 1.60955 1.06406 1.21534 0.90376 0.98886 0.96057 1.20874 0.82400 0.85045 0.89146 1.90486 1.54197 1.52010 1.54179 1.41959 1.06384 1.49225 1.23558 1.19719 0.92375 1.32009 1.02222 0.90211 1.26060 0.95197 0.98104 1.02019 1.69677 1.02941 1.44539 1.39026 0.84854 0.78063 0.77993 0.77323 1.19694 1.19586 1.19698 1.46029 1.66807 1.14783 1.08833 1.20898 0.76933 0.86876 0.85231 1.90741 1.51401 1.18034 1.85606 1.20133 1.06794 0.96165 0.86938 1.20709 0.91443 1.04592 0.95646 1.22203 1.01272 0.98324 0.97665 1.70194 1.14143 1.27370 1.14258 1.25529 0.93329 0.92327 0.99302 1.45466 1.16157 1.30610 1.21551 1.22347 0.81544 0.98815 1.04971 0.90995 0.93771 0.90900 0.89999 0.89404 0.90078 0.95682 0.83797 0.87676 0.92150 0.77006 0.91304 0.74649 0.84948 0.84320 0.81990 0.74770 0.88155 0.87603 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.48 71.98 0.68 -1.40 16 2 C 0.15 2.28 2.57 44.99 0.12 2.39 16 3 H 0.06 1.34 7.58 -2.39 -0.02 1.32 16 4 C -0.11 -1.77 5.01 30.59 0.15 -1.62 16 5 C 0.06 1.26 5.57 86.30 0.48 1.74 16 6 N -0.68 -19.85 6.13 -517.93 -3.17 -23.03 16 7 C 0.06 2.13 6.17 85.56 0.53 2.66 16 8 C 0.44 20.58 7.82 87.66 0.69 21.27 16 9 O -0.62 -34.00 15.78 -3.06 -0.05 -34.05 16 10 N -0.57 -29.35 5.29 -307.00 -1.62 -30.97 16 11 C -0.33 -18.91 9.68 84.04 0.81 -18.09 16 12 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 13 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 14 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 15 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 19 N -0.71 -8.71 4.53 -442.54 -2.00 -10.72 16 20 C 0.51 8.49 7.79 87.66 0.68 9.18 16 21 O -0.58 -15.60 15.70 -3.04 -0.05 -15.64 16 22 C -0.06 -0.63 5.88 29.10 0.17 -0.45 16 23 C -0.01 -0.14 5.45 40.95 0.22 0.08 16 24 C -0.05 -1.12 11.79 83.52 0.98 -0.13 16 25 N -0.54 -13.82 11.25 -200.31 -2.25 -16.07 16 26 C 0.18 3.10 12.56 180.26 2.26 5.36 16 27 N -0.46 -6.59 3.15 -537.87 -1.70 -8.28 16 28 C 0.06 0.31 10.83 127.77 1.38 1.69 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.50 7.75 -2.38 -0.02 1.48 16 35 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.34 10.67 8.43 -89.69 -0.76 9.92 16 37 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 40 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 41 H 0.42 2.89 8.60 -92.71 -0.80 2.10 16 42 H 0.13 0.49 7.63 -2.39 -0.02 0.47 16 43 H 0.14 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 45 H 0.24 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 48 H 0.08 0.38 7.67 -2.38 -0.02 0.37 16 Total: -1.00 -83.60 408.56 -0.19 -83.79 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: -1.29 Total: 37.21 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 9.64 Total: 22.38 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -10.47 Total: -138.46 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.10 Total: -49.69 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -83.60 -0.19 -83.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497304966.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.275 kcal (2) G-P(sol) polarization free energy of solvation -83.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds