Wall clock time and date at job start Tue Mar 31 2020 20:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 C 1.52997 * 109.47245 * 239.99984 * 2 1 3 5 5 N 1.46902 * 109.47186 * 184.99819 * 4 2 1 6 6 C 1.46896 * 111.00077 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47260 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99806 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99739 * 180.02562 * 9 7 6 11 11 H 1.08007 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99993 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99889 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00013 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47469 * 89.99631 * 14 12 10 16 16 H 1.48503 * 109.47048 * 209.99719 * 14 12 10 17 17 H 1.48507 * 109.47056 * 329.99241 * 14 12 10 18 18 N 1.46499 * 109.47090 * 119.99803 * 2 1 3 19 19 C 1.34772 * 120.00413 * 275.00282 * 18 2 1 20 20 O 1.21282 * 119.99846 * 0.02562 * 19 18 2 21 21 C 1.50696 * 120.00298 * 179.97438 * 19 18 2 22 22 C 1.53005 * 109.47260 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47260 * 179.97438 * 22 21 19 24 24 C 1.35325 * 126.12378 * 85.02905 * 23 22 21 25 25 C 1.39868 * 107.91737 * 180.24396 * 24 23 22 26 26 N 1.30842 * 108.20327 * 359.55203 * 25 24 23 27 27 N 1.34941 * 126.13067 * 265.00771 * 23 22 21 28 28 C 1.46498 * 126.04014 * 359.97438 * 27 23 22 29 29 H 1.09006 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47477 * 300.00047 * 1 2 3 31 31 H 1.08997 * 109.47245 * 60.00289 * 1 2 3 32 32 H 1.09004 * 109.47468 * 305.00173 * 4 2 1 33 33 H 1.08996 * 109.47362 * 65.00107 * 4 2 1 34 34 H 1.00904 * 110.99787 * 56.04850 * 5 4 2 35 35 H 1.09006 * 109.47449 * 300.00359 * 6 5 4 36 36 H 1.09001 * 109.47009 * 60.00137 * 6 5 4 37 37 H 0.96999 * 119.99914 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99887 * 179.97438 * 13 12 10 39 39 H 0.97005 * 119.99627 * 94.99598 * 18 2 1 40 40 H 1.09002 * 109.46733 * 60.00075 * 21 19 18 41 41 H 1.08995 * 109.47496 * 300.00545 * 21 19 18 42 42 H 1.09002 * 109.46948 * 60.00498 * 22 21 19 43 43 H 1.08998 * 109.46871 * 300.00528 * 22 21 19 44 44 H 1.08002 * 126.03725 * 359.97438 * 24 23 22 45 45 H 1.08007 * 125.89524 * 179.73435 * 25 24 23 46 46 H 1.08994 * 109.47427 * 90.00207 * 28 27 23 47 47 H 1.08999 * 109.47247 * 210.00793 * 28 27 23 48 48 H 1.09007 * 109.46720 * 330.00755 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3761 7 6 5.5316 -1.6053 -2.2801 8 8 6.1065 -1.1411 -1.3183 9 7 6.2354 -2.2013 -3.2630 10 6 7.6011 -2.2831 -3.1754 11 1 8.1130 -1.8705 -2.3185 12 6 8.3268 -2.8970 -4.1889 13 7 7.7039 -3.3996 -5.2312 14 14 10.1875 -3.0092 -4.0692 15 1 10.5641 -4.2677 -3.3767 16 1 10.7727 -3.0011 -5.4340 17 1 10.7051 -1.8479 -3.3018 18 7 2.0183 -0.6906 1.1962 19 6 2.1470 -0.0183 2.3571 20 8 1.8581 1.1584 2.4117 21 6 2.6488 -0.7288 3.5877 22 6 2.7009 0.2545 4.7588 23 6 3.2021 -0.4562 5.9896 24 6 4.4983 -0.6509 6.3261 25 6 4.5280 -1.3549 7.5343 26 7 3.2941 -1.5666 7.9145 27 7 2.4388 -1.0120 6.9536 28 6 0.9744 -1.0311 6.9897 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.7996 -1.2883 -0.3432 35 1 3.6095 -2.5199 -2.4294 36 1 3.7558 -0.9588 -3.2719 37 1 5.7756 -2.5722 -4.0323 38 1 8.2105 -3.8278 -5.9389 39 1 2.2489 -1.6318 1.1526 40 1 3.6479 -1.1213 3.3986 41 1 1.9760 -1.5506 3.8325 42 1 1.7019 0.6473 4.9481 43 1 3.3740 1.0760 4.5137 44 1 5.3578 -0.3245 5.7595 45 1 5.4162 -1.6671 8.0636 46 1 0.6102 -1.9258 6.4848 47 1 0.6365 -1.0357 8.0259 48 1 0.5870 -0.1460 6.4850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497823403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:36 Heat of formation + Delta-G solvation = -2.919377 kcal Electronic energy + Delta-G solvation = -28196.013140 eV Core-core repulsion = 24094.414085 eV Total energy + Delta-G solvation = -4101.599055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48225 -40.01748 -38.35568 -36.87249 -34.42592 -34.25159 -33.67197 -33.24650 -31.39697 -31.18175 -29.34866 -27.64854 -27.00124 -25.28135 -24.83987 -23.28780 -21.45878 -21.32196 -20.54215 -19.85959 -19.28674 -17.95423 -17.63540 -16.74936 -16.44698 -16.06067 -15.79997 -15.64922 -15.36064 -14.72736 -14.65104 -14.49268 -14.22114 -13.99229 -13.93103 -13.63644 -13.29559 -13.14971 -13.11326 -12.91032 -12.69316 -12.61760 -12.39209 -12.25769 -11.98463 -11.78130 -11.64333 -11.50321 -11.44731 -11.10195 -11.01699 -10.83409 -10.41003 -10.24173 -10.01435 -9.53569 -9.49813 -9.23798 -8.73314 -8.51145 -8.13406 -7.99063 -6.44332 -3.85198 1.59671 2.25840 2.51688 2.61664 3.02863 3.16212 3.25269 3.31346 3.86966 4.00744 4.20873 4.27126 4.28776 4.58196 4.63006 4.73501 4.79447 4.90885 4.92608 4.96168 5.05031 5.12771 5.13994 5.19227 5.23913 5.33524 5.37360 5.50074 5.54241 5.57621 5.58561 5.71813 5.72444 5.87331 5.92418 5.98636 6.01922 6.22070 6.36370 6.44267 6.75496 7.09919 7.32310 7.47972 7.52881 7.55034 8.03400 8.08506 8.58157 9.15229 9.51117 10.02352 10.73318 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002171 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.985029 B =12896.238399 C =15197.499468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.144 3.856 3 H 0.098 0.902 4 C 0.050 3.950 5 N -0.667 5.667 6 C 0.050 3.950 7 C 0.439 3.561 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.299 4.299 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 N -0.723 5.723 19 C 0.520 3.480 20 O -0.541 6.541 21 C -0.136 4.136 22 C -0.040 4.040 23 C 0.086 3.914 24 C -0.269 4.269 25 C 0.047 3.953 26 N -0.302 5.302 27 N -0.374 5.374 28 C 0.098 3.902 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.032 0.968 33 H 0.087 0.913 34 H 0.347 0.653 35 H 0.043 0.957 36 H 0.087 0.913 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.398 0.602 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.101 0.899 44 H 0.150 0.850 45 H 0.183 0.817 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.132 2.122 16.572 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.116 0.884 4 C -0.080 4.080 5 N -0.300 5.300 6 C -0.083 4.083 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 N -0.374 5.374 19 C 0.307 3.693 20 O -0.418 6.418 21 C -0.177 4.177 22 C -0.080 4.080 23 C -0.041 4.041 24 C -0.298 4.298 25 C -0.138 4.138 26 N -0.124 5.124 27 N -0.157 5.157 28 C -0.043 4.043 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.167 0.833 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.232 0.768 40 H 0.123 0.877 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.168 0.832 45 H 0.200 0.800 46 H 0.092 0.908 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.677 3.306 17.727 25.251 hybrid contribution 1.037 -1.527 -1.091 2.144 sum -16.640 1.779 16.635 23.596 Atomic orbital electron populations 1.22143 0.95085 1.01999 1.02735 1.21041 0.93350 0.98551 0.83156 0.88368 1.22308 0.88876 0.98956 0.97863 1.60022 1.07445 1.57520 1.04976 1.21696 0.95198 0.96921 0.94462 1.19791 0.88050 0.84346 0.85359 1.90529 1.71102 1.51516 1.33512 1.41864 1.07443 1.50819 1.19835 1.19704 0.81502 1.35145 1.06541 0.87905 1.25269 1.00739 0.96763 0.95188 1.69609 1.36740 1.38585 1.09358 0.85853 0.82110 0.78871 0.77446 1.20410 1.20909 1.19362 1.46032 1.67532 1.13957 1.09907 1.20474 0.77133 0.87242 0.84497 1.90707 1.50043 1.15866 1.85138 1.21630 1.04301 0.99241 0.92531 1.19965 1.03190 0.96922 0.87903 1.21084 0.91735 0.98542 0.92778 1.21353 0.96195 1.11418 1.00814 1.23863 0.95476 0.98375 0.96110 1.77364 1.00932 1.21065 1.13009 1.48499 1.06455 1.43841 1.16866 1.21853 0.74600 1.03324 1.04571 0.92607 0.91958 0.91380 0.95026 0.89468 0.83282 0.93876 0.89457 0.77468 0.91857 0.76804 0.87698 0.89125 0.90039 0.88070 0.83238 0.79975 0.90763 0.89313 0.89418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.48 37.16 0.35 -0.99 16 2 C 0.14 1.49 2.88 -67.93 -0.20 1.29 16 3 H 0.10 1.28 7.58 -51.93 -0.39 0.89 16 4 C 0.05 0.54 5.30 -3.82 -0.02 0.52 16 5 N -0.67 -10.05 6.12 -115.06 -0.70 -10.75 16 6 C 0.05 0.83 6.17 -4.98 -0.03 0.80 16 7 C 0.44 10.13 7.82 -10.98 -0.09 10.04 16 8 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 9 N -0.56 -14.02 5.29 -10.96 -0.06 -14.08 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 11 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 14 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 15 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 18 N -0.72 -6.92 4.36 -53.81 -0.23 -7.15 16 19 C 0.52 5.56 7.79 -10.99 -0.09 5.48 16 20 O -0.54 -7.65 15.65 5.56 0.09 -7.57 16 21 C -0.14 -1.09 5.68 -27.88 -0.16 -1.25 16 22 C -0.04 -0.34 4.79 -27.88 -0.13 -0.48 16 23 C 0.09 0.83 6.19 -82.27 -0.51 0.32 16 24 C -0.27 -2.70 10.72 -40.01 -0.43 -3.13 16 25 C 0.05 0.48 12.03 -17.36 -0.21 0.27 16 26 N -0.30 -3.52 12.58 30.63 0.39 -3.13 16 27 N -0.37 -3.68 4.01 -63.89 -0.26 -3.93 16 28 C 0.10 0.59 11.27 59.85 0.67 1.26 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.35 5.31 7.28 -39.29 -0.29 5.03 16 35 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.40 3.08 8.15 -40.82 -0.33 2.75 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.65 6.90 -51.93 -0.36 0.29 16 43 H 0.10 0.96 8.10 -51.93 -0.42 0.54 16 44 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 46 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 48 H 0.09 0.38 6.97 -51.92 -0.36 0.02 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -35.53 407.02 -7.41 -42.94 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -7.48 Total: 14.47 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.07 Total: 6.22 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.14 Total: -62.57 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.17 Total: -23.04 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.53 -7.41 -42.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497823403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.018 kcal (2) G-P(sol) polarization free energy of solvation -35.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds