Wall clock time and date at job start Tue Mar 31 2020 20:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47332 * 2 1 4 4 C 1.52997 * 109.47245 * 239.99984 * 2 1 3 5 5 N 1.46902 * 109.47186 * 184.99819 * 4 2 1 6 6 C 1.46896 * 111.00077 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.47260 * 180.02562 * 6 5 4 8 8 O 1.21289 * 119.99806 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99945 * 180.02562 * 7 6 5 10 10 C 1.37097 * 119.99739 * 180.02562 * 9 7 6 11 11 H 1.08007 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99993 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99889 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00013 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47469 * 89.99631 * 14 12 10 16 16 H 1.48503 * 109.47048 * 209.99719 * 14 12 10 17 17 H 1.48507 * 109.47056 * 329.99241 * 14 12 10 18 18 N 1.46499 * 109.47090 * 119.99803 * 2 1 3 19 19 C 1.34772 * 120.00413 * 275.00282 * 18 2 1 20 20 O 1.21282 * 119.99846 * 0.02562 * 19 18 2 21 21 C 1.50696 * 120.00298 * 179.97438 * 19 18 2 22 22 C 1.53005 * 109.47260 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47260 * 179.97438 * 22 21 19 24 24 C 1.35325 * 126.12378 * 85.02905 * 23 22 21 25 25 C 1.39868 * 107.91737 * 180.24396 * 24 23 22 26 26 N 1.30842 * 108.20327 * 359.55203 * 25 24 23 27 27 N 1.34941 * 126.13067 * 265.00771 * 23 22 21 28 28 C 1.46498 * 126.04014 * 359.97438 * 27 23 22 29 29 H 1.09006 * 109.47182 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47477 * 300.00047 * 1 2 3 31 31 H 1.08997 * 109.47245 * 60.00289 * 1 2 3 32 32 H 1.09004 * 109.47468 * 305.00173 * 4 2 1 33 33 H 1.08996 * 109.47362 * 65.00107 * 4 2 1 34 34 H 1.00904 * 110.99787 * 56.04850 * 5 4 2 35 35 H 1.09006 * 109.47449 * 300.00359 * 6 5 4 36 36 H 1.09001 * 109.47009 * 60.00137 * 6 5 4 37 37 H 0.96999 * 119.99914 * 0.02562 * 9 7 6 38 38 H 0.96999 * 119.99887 * 179.97438 * 13 12 10 39 39 H 0.97005 * 119.99627 * 94.99598 * 18 2 1 40 40 H 1.09002 * 109.46733 * 60.00075 * 21 19 18 41 41 H 1.08995 * 109.47496 * 300.00545 * 21 19 18 42 42 H 1.09002 * 109.46948 * 60.00498 * 22 21 19 43 43 H 1.08998 * 109.46871 * 300.00528 * 22 21 19 44 44 H 1.08002 * 126.03725 * 359.97438 * 24 23 22 45 45 H 1.08007 * 125.89524 * 179.73435 * 25 24 23 46 46 H 1.08994 * 109.47427 * 90.00207 * 28 27 23 47 47 H 1.08999 * 109.47247 * 210.00793 * 28 27 23 48 48 H 1.09007 * 109.46720 * 330.00755 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3761 7 6 5.5316 -1.6053 -2.2801 8 8 6.1065 -1.1411 -1.3183 9 7 6.2354 -2.2013 -3.2630 10 6 7.6011 -2.2831 -3.1754 11 1 8.1130 -1.8705 -2.3185 12 6 8.3268 -2.8970 -4.1889 13 7 7.7039 -3.3996 -5.2312 14 14 10.1875 -3.0092 -4.0692 15 1 10.5641 -4.2677 -3.3767 16 1 10.7727 -3.0011 -5.4340 17 1 10.7051 -1.8479 -3.3018 18 7 2.0183 -0.6906 1.1962 19 6 2.1470 -0.0183 2.3571 20 8 1.8581 1.1584 2.4117 21 6 2.6488 -0.7288 3.5877 22 6 2.7009 0.2545 4.7588 23 6 3.2021 -0.4562 5.9896 24 6 4.4983 -0.6509 6.3261 25 6 4.5280 -1.3549 7.5343 26 7 3.2941 -1.5666 7.9145 27 7 2.4388 -1.0120 6.9536 28 6 0.9744 -1.0311 6.9897 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 3.7996 -1.2883 -0.3432 35 1 3.6095 -2.5199 -2.4294 36 1 3.7558 -0.9588 -3.2719 37 1 5.7756 -2.5722 -4.0323 38 1 8.2105 -3.8278 -5.9389 39 1 2.2489 -1.6318 1.1526 40 1 3.6479 -1.1213 3.3986 41 1 1.9760 -1.5506 3.8325 42 1 1.7019 0.6473 4.9481 43 1 3.3740 1.0760 4.5137 44 1 5.3578 -0.3245 5.7595 45 1 5.4162 -1.6671 8.0636 46 1 0.6102 -1.9258 6.4848 47 1 0.6365 -1.0357 8.0259 48 1 0.5870 -0.1460 6.4850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497823403.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:35 Heat of formation + Delta-G solvation = -30.358526 kcal Electronic energy + Delta-G solvation = -28197.202991 eV Core-core repulsion = 24094.414085 eV Total energy + Delta-G solvation = -4102.788906 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.20824 -40.89068 -40.11103 -37.92299 -36.02709 -35.14764 -35.01099 -33.89511 -33.24999 -32.17298 -30.09651 -28.95978 -27.58634 -26.71601 -25.80323 -24.57359 -22.27066 -22.06616 -21.38219 -21.05710 -20.54466 -19.90269 -18.51331 -17.87697 -17.35521 -17.20345 -16.81761 -16.56402 -16.41560 -16.26185 -16.00314 -15.45486 -15.28236 -15.24752 -14.96896 -14.72183 -14.32384 -14.12693 -14.01839 -13.70609 -13.58658 -13.47695 -13.24953 -13.13487 -13.06409 -13.01784 -12.98312 -12.78407 -12.61311 -12.40816 -12.13744 -12.12179 -11.91424 -11.59226 -11.49930 -10.89774 -10.35565 -10.22706 -10.05285 -10.00613 -9.47642 -9.31054 -8.46246 -5.94598 0.85912 1.38358 1.42594 1.54975 1.63429 1.68518 1.85972 2.06422 2.25864 2.30003 2.90684 3.21396 3.48546 3.55137 3.71080 3.86341 3.91485 3.97622 4.18714 4.22523 4.29248 4.34827 4.37987 4.41060 4.50791 4.52312 4.61036 4.64108 4.67533 4.69801 4.77439 4.82679 4.83476 4.89074 5.04456 5.11902 5.27093 5.30295 5.41739 5.57034 5.73016 5.87891 6.09476 6.09868 6.40075 6.55673 6.61023 6.73785 7.13642 7.28593 7.57489 8.12920 8.70986 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002171 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.985029 B =12896.238399 C =15197.499468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.066 0.934 4 C 0.055 3.945 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.078 0.922 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.270 1.270 16 H -0.271 1.271 17 H -0.274 1.274 18 N -0.716 5.716 19 C 0.517 3.483 20 O -0.580 6.580 21 C -0.127 4.127 22 C -0.033 4.033 23 C 0.086 3.914 24 C -0.287 4.287 25 C 0.040 3.960 26 N -0.335 5.335 27 N -0.377 5.377 28 C 0.088 3.912 29 H 0.073 0.927 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.344 0.656 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.397 0.603 38 H 0.277 0.723 39 H 0.409 0.591 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.155 0.845 45 H 0.205 0.795 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 1.037 16.044 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.084 0.916 4 C -0.074 4.074 5 N -0.320 5.320 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.510 6.510 9 N -0.210 5.210 10 C -0.462 4.462 11 H 0.096 0.904 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.195 1.195 16 H -0.196 1.196 17 H -0.199 1.199 18 N -0.368 5.368 19 C 0.305 3.695 20 O -0.460 6.460 21 C -0.167 4.167 22 C -0.072 4.072 23 C -0.042 4.042 24 C -0.317 4.317 25 C -0.144 4.144 26 N -0.157 5.157 27 N -0.160 5.160 28 C -0.052 4.052 29 H 0.092 0.908 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.115 0.885 34 H 0.163 0.837 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.245 0.755 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.173 0.827 45 H 0.221 0.779 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.964 2.185 17.178 25.681 hybrid contribution 1.365 -1.151 -0.915 2.006 sum -17.599 1.034 16.263 23.985 Atomic orbital electron populations 1.22051 0.93139 1.03101 1.02691 1.20959 0.94719 0.96884 0.83346 0.91587 1.22366 0.86152 1.00541 0.98295 1.59993 1.10284 1.57565 1.04169 1.21548 0.90141 0.99141 0.95879 1.20951 0.90768 0.82135 0.83822 1.90499 1.72869 1.52720 1.34945 1.41932 1.06838 1.51634 1.20637 1.19642 0.83144 1.36819 1.06620 0.90430 1.26014 1.04790 0.95902 0.94561 1.69663 1.38225 1.38517 1.09625 0.84955 0.77003 0.78729 0.77834 1.19530 1.19616 1.19929 1.46005 1.66904 1.14450 1.09449 1.20893 0.76441 0.86817 0.85327 1.90692 1.51901 1.17600 1.85788 1.21578 1.04768 0.99346 0.90992 1.19881 1.03144 0.96550 0.87673 1.21216 0.91806 0.98234 0.92955 1.21592 0.96804 1.12031 1.01248 1.24283 0.95917 0.97988 0.96226 1.77304 1.01727 1.22384 1.14245 1.48796 1.07603 1.43264 1.16331 1.22165 0.72724 1.04852 1.05479 0.90834 0.93227 0.90254 0.92330 0.88547 0.83683 0.90961 0.87721 0.76917 0.91318 0.75505 0.87556 0.86711 0.89375 0.89373 0.82706 0.77884 0.89280 0.88790 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.48 71.98 0.68 -1.51 16 2 C 0.15 2.80 2.88 44.99 0.13 2.93 16 3 H 0.07 1.73 7.58 -2.39 -0.02 1.71 16 4 C 0.06 1.04 5.30 86.30 0.46 1.50 16 5 N -0.69 -19.55 6.12 -517.93 -3.17 -22.72 16 6 C 0.07 2.04 6.17 85.56 0.53 2.57 16 7 C 0.44 20.04 7.82 87.66 0.69 20.72 16 8 O -0.62 -33.89 15.78 -3.06 -0.05 -33.94 16 9 N -0.57 -28.68 5.29 -306.98 -1.62 -30.30 16 10 C -0.33 -18.65 9.68 84.04 0.81 -17.84 16 11 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -48.85 13.05 21.66 0.28 -48.57 16 14 Si 0.99 42.54 29.55 68.60 2.03 44.56 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 N -0.72 -12.70 4.36 -442.55 -1.93 -14.63 16 19 C 0.52 10.72 7.79 87.66 0.68 11.40 16 20 O -0.58 -16.53 15.65 -3.04 -0.05 -16.58 16 21 C -0.13 -1.88 5.68 29.85 0.17 -1.71 16 22 C -0.03 -0.55 4.79 29.85 0.14 -0.40 16 23 C 0.09 1.62 6.19 41.41 0.26 1.87 16 24 C -0.29 -5.75 10.72 21.99 0.24 -5.51 16 25 C 0.04 0.81 12.03 85.23 1.02 1.83 16 26 N -0.33 -7.67 12.58 -57.02 -0.72 -8.38 16 27 N -0.38 -7.11 4.01 -356.04 -1.43 -8.54 16 28 C 0.09 0.93 11.27 127.77 1.44 2.37 16 29 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.10 1.67 8.14 -2.39 -0.02 1.66 16 34 H 0.34 10.10 7.28 -89.69 -0.65 9.45 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 38 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 39 H 0.41 5.47 8.15 -92.70 -0.76 4.71 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.09 1.33 6.90 -2.39 -0.02 1.32 16 43 H 0.09 1.70 8.10 -2.39 -0.02 1.68 16 44 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 45 H 0.20 2.80 8.06 -2.91 -0.02 2.78 16 46 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.10 0.74 6.97 -2.38 -0.02 0.72 16 Total: -1.00 -78.10 407.02 -0.08 -78.18 By element: Atomic # 1 Polarization: 44.04 SS G_CDS: -1.14 Total: 42.89 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.72 Total: 18.01 kcal Atomic # 7 Polarization: -124.55 SS G_CDS: -8.58 Total: -133.13 kcal Atomic # 8 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.52 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -78.10 -0.08 -78.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497823403.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.823 kcal (2) G-P(sol) polarization free energy of solvation -78.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds