Wall clock time and date at job start Tue Mar 31 2020 20:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46978 * 2 1 4 4 C 1.34253 * 125.75384 * 125.27243 * 3 2 1 5 5 C 1.38045 * 107.41857 * 180.14588 * 4 3 2 6 6 C 1.47431 * 126.41620 * 179.87037 * 5 4 3 7 7 O 1.21605 * 120.00033 * 179.68782 * 6 5 4 8 8 N 1.34774 * 120.00140 * 359.68495 * 6 5 4 9 9 C 1.46495 * 120.00080 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46996 * 35.00503 * 9 8 6 11 11 C 1.52994 * 109.47359 * 275.00294 * 9 8 6 12 12 C 1.53006 * 109.46914 * 154.99872 * 9 8 6 13 13 N 1.46898 * 109.47138 * 305.00206 * 12 9 8 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00058 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00409 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47268 * 90.00146 * 22 20 18 24 24 H 1.48500 * 109.47502 * 210.00166 * 22 20 18 25 25 H 1.48501 * 109.47054 * 330.00549 * 22 20 18 26 26 C 1.41289 * 107.16827 * 359.60644 * 5 4 3 27 27 C 1.50702 * 125.98723 * 180.27903 * 26 5 4 28 28 N 1.30450 * 108.02327 * 0.23941 * 26 5 4 29 29 H 1.08997 * 109.46840 * 299.99380 * 1 2 3 30 30 H 1.08994 * 109.47496 * 60.00218 * 1 2 3 31 31 H 1.09005 * 109.46617 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46701 * 240.00232 * 2 1 3 33 33 H 1.08997 * 109.47440 * 120.00322 * 2 1 3 34 34 H 1.08005 * 126.29231 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99482 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46971 * 299.99615 * 11 9 8 37 37 H 1.08990 * 109.47506 * 59.99735 * 11 9 8 38 38 H 1.09002 * 109.47542 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.46770 * 185.00153 * 12 9 8 40 40 H 1.08995 * 109.47019 * 65.00366 * 12 9 8 41 41 H 1.00904 * 110.99913 * 303.95145 * 13 12 9 42 42 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 43 43 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 44 44 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 45 45 H 0.97002 * 120.00022 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46883 * 90.00006 * 27 26 5 47 47 H 1.09002 * 109.46928 * 209.99488 * 27 26 5 48 48 H 1.08995 * 109.47215 * 329.99527 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0707 3.2310 0.5369 6 6 3.9323 4.2035 1.2338 7 8 4.0255 5.3418 0.8164 8 7 4.6165 3.8308 2.3335 9 6 5.4730 4.7970 3.0257 10 1 5.0209 5.7873 2.9718 11 6 6.8496 4.8278 2.3587 12 6 5.6255 4.3850 4.4913 13 7 4.2964 4.2392 5.0998 14 6 4.4038 3.8440 6.5106 15 6 3.0237 3.7051 7.0998 16 8 2.0469 3.9142 6.4120 17 7 2.8751 3.3485 8.3910 18 6 1.6196 3.2216 8.9268 19 1 0.7497 3.4077 8.3144 20 6 1.4662 2.8534 10.2579 21 7 2.5247 2.6264 11.0029 22 14 -0.2443 2.6812 10.9882 23 1 -0.7224 1.2870 10.8060 24 1 -0.1988 3.0034 12.4372 25 1 -1.1719 3.6161 10.3021 26 6 2.2976 3.4738 -0.6205 27 6 2.2067 4.7800 -1.3667 28 7 1.6771 2.3690 -0.9305 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3211 1.3996 1.7285 35 1 4.5418 2.9228 2.6667 36 1 7.3017 3.8374 2.4126 37 1 6.7410 5.1212 1.3146 38 1 7.4870 5.5463 2.8739 39 1 6.1884 5.1495 5.0269 40 1 6.1574 3.4354 4.5484 41 1 3.7589 5.0875 5.0021 42 1 4.9275 2.8906 6.5820 43 1 4.9581 4.6050 7.0599 44 1 3.6564 3.1809 8.9409 45 1 2.4177 2.3697 11.9323 46 1 2.9784 4.8136 -2.1358 47 1 1.2251 4.8643 -1.8332 48 1 2.3506 5.6066 -0.6711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497926566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:14 Heat of formation + Delta-G solvation = -6.124265 kcal Electronic energy + Delta-G solvation = -28817.471910 eV Core-core repulsion = 24715.733881 eV Total energy + Delta-G solvation = -4101.738030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.51420 -39.32742 -38.28504 -36.55589 -34.95280 -34.25131 -33.64887 -31.88473 -31.26108 -31.10648 -29.56420 -27.79059 -27.58647 -25.05626 -24.06627 -23.24373 -22.49609 -21.33562 -20.20778 -19.63159 -19.22158 -17.93891 -17.69758 -16.53499 -16.38474 -15.84711 -15.73963 -15.08537 -14.92239 -14.60086 -14.52693 -14.29805 -14.07428 -13.90898 -13.80658 -13.47956 -13.30433 -13.11663 -12.92774 -12.57097 -12.51619 -12.42748 -12.27886 -12.03194 -11.94822 -11.76915 -11.67126 -11.54424 -11.49015 -11.06132 -10.91562 -10.84344 -10.41557 -10.24229 -9.69210 -9.53283 -9.44394 -9.00251 -8.63890 -8.49136 -8.10885 -7.98449 -6.44329 -3.85121 1.44485 2.14376 2.18536 3.15651 3.24557 3.30534 3.33111 3.58311 3.88507 4.05568 4.12520 4.29116 4.48088 4.60411 4.69000 4.81014 4.83959 5.03835 5.07215 5.13258 5.22028 5.26868 5.30829 5.35923 5.40775 5.45330 5.47713 5.60538 5.63624 5.66495 5.76713 5.78810 5.89141 5.93208 5.97375 6.00072 6.10863 6.23697 6.49729 6.61190 6.70763 7.14987 7.48850 7.52786 7.59768 7.74429 8.03873 8.45323 8.58830 9.15618 9.51878 10.03449 10.73427 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.002656 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.232152 B =10538.231130 C =12589.827370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.358 5.358 4 C 0.105 3.895 5 C -0.287 4.287 6 C 0.598 3.402 7 O -0.551 6.551 8 N -0.707 5.707 9 C 0.148 3.852 10 H 0.087 0.913 11 C -0.160 4.160 12 C 0.048 3.952 13 N -0.667 5.667 14 C 0.050 3.950 15 C 0.440 3.560 16 O -0.582 6.582 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.269 1.269 26 C 0.130 3.870 27 C -0.075 4.075 28 N -0.303 5.303 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.182 0.818 35 H 0.400 0.600 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.076 0.924 41 H 0.352 0.648 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.068 0.932 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.274 -3.952 -19.488 21.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 N -0.137 5.137 4 C -0.046 4.046 5 C -0.301 4.301 6 C 0.386 3.614 7 O -0.430 6.430 8 N -0.357 5.357 9 C 0.042 3.958 10 H 0.105 0.895 11 C -0.219 4.219 12 C -0.082 4.082 13 N -0.299 5.299 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.466 6.466 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.038 4.038 27 C -0.134 4.134 28 N -0.125 5.125 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.199 0.801 35 H 0.235 0.765 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.171 0.829 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.733 -4.421 -21.061 22.270 hybrid contribution 0.535 0.229 2.237 2.311 sum 6.267 -4.192 -18.824 20.278 Atomic orbital electron populations 1.22060 0.93356 1.03083 1.03954 1.21826 0.96605 0.76884 1.04088 1.48493 1.34016 1.10510 1.20634 1.23143 0.92804 0.94007 0.94686 1.20234 1.11940 0.94356 1.03620 1.17180 0.78159 0.86462 0.79583 1.90708 1.65587 1.20033 1.66705 1.45633 1.47010 1.15127 1.27966 1.20899 0.90615 0.93989 0.90253 0.89502 1.22138 0.96143 1.02001 1.01651 1.22318 0.91562 1.01130 0.93233 1.60078 1.13779 1.41123 1.14942 1.21681 0.96964 1.00997 0.88603 1.19816 0.90007 0.84525 0.83101 1.90538 1.40358 1.55380 1.60281 1.41865 1.09148 1.60172 1.08913 1.19698 0.85284 1.43489 0.94396 0.87963 1.25255 0.99241 0.97222 0.96208 1.69612 1.29115 1.47218 1.08427 0.85865 0.81812 0.78740 0.77931 1.20408 1.20916 1.19404 1.22444 0.92796 0.94966 0.93556 1.20316 1.02258 0.91014 0.99805 1.77117 1.24697 0.96851 1.13835 0.91640 0.91032 0.90505 0.89493 0.88162 0.80058 0.76500 0.92473 0.91799 0.91729 0.93923 0.90570 0.82890 0.89660 0.93853 0.77488 0.91873 0.90498 0.91277 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.09 37.16 0.37 -0.85 16 2 C 0.13 0.89 7.21 -4.04 -0.03 0.86 16 3 N -0.36 -3.88 3.65 -60.81 -0.22 -4.10 16 4 C 0.11 1.13 10.94 -16.56 -0.18 0.94 16 5 C -0.29 -3.78 6.13 -105.07 -0.64 -4.43 16 6 C 0.60 8.40 7.78 -12.52 -0.10 8.30 16 7 O -0.55 -9.12 14.58 5.27 0.08 -9.04 16 8 N -0.71 -8.28 4.79 -54.88 -0.26 -8.55 16 9 C 0.15 1.64 2.81 -67.93 -0.19 1.45 16 10 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.16 -1.48 9.48 37.15 0.35 -1.13 16 12 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 13 N -0.67 -9.98 5.85 -115.05 -0.67 -10.65 16 14 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 15 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 16 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 17 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 C 0.13 1.76 7.26 -82.02 -0.60 1.16 16 27 C -0.08 -0.88 9.92 36.01 0.36 -0.52 16 28 N -0.30 -4.01 12.33 33.90 0.42 -3.60 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.47 8.06 -51.93 -0.42 0.05 16 34 H 0.18 1.33 7.46 -52.48 -0.39 0.94 16 35 H 0.40 4.13 7.53 -40.82 -0.31 3.82 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.35 5.86 8.43 -39.29 -0.33 5.53 16 42 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 48 H 0.10 1.24 6.55 -51.93 -0.34 0.90 16 LS Contribution 407.04 15.07 6.13 6.13 Total: -1.00 -34.78 407.04 -7.34 -42.12 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: -7.51 Total: 15.72 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.03 Total: 9.21 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -0.07 Total: -64.54 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: 0.16 Total: -24.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.78 -7.34 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497926566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.998 kcal (2) G-P(sol) polarization free energy of solvation -34.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds