Wall clock time and date at job start Tue Mar 31 2020 20:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.46978 * 2 1 4 4 C 1.34253 * 125.75384 * 125.27243 * 3 2 1 5 5 C 1.38045 * 107.41857 * 180.14588 * 4 3 2 6 6 C 1.47431 * 126.41620 * 179.87037 * 5 4 3 7 7 O 1.21605 * 120.00033 * 179.68782 * 6 5 4 8 8 N 1.34774 * 120.00140 * 359.68495 * 6 5 4 9 9 C 1.46495 * 120.00080 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46996 * 35.00503 * 9 8 6 11 11 C 1.52994 * 109.47359 * 275.00294 * 9 8 6 12 12 C 1.53006 * 109.46914 * 154.99872 * 9 8 6 13 13 N 1.46898 * 109.47138 * 305.00206 * 12 9 8 14 14 C 1.46906 * 110.99888 * 180.02562 * 13 12 9 15 15 C 1.50699 * 109.47140 * 179.97438 * 14 13 12 16 16 O 1.21289 * 119.99678 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99614 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99518 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00058 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00085 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99807 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00409 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47268 * 90.00146 * 22 20 18 24 24 H 1.48500 * 109.47502 * 210.00166 * 22 20 18 25 25 H 1.48501 * 109.47054 * 330.00549 * 22 20 18 26 26 C 1.41289 * 107.16827 * 359.60644 * 5 4 3 27 27 C 1.50702 * 125.98723 * 180.27903 * 26 5 4 28 28 N 1.30450 * 108.02327 * 0.23941 * 26 5 4 29 29 H 1.08997 * 109.46840 * 299.99380 * 1 2 3 30 30 H 1.08994 * 109.47496 * 60.00218 * 1 2 3 31 31 H 1.09005 * 109.46617 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46701 * 240.00232 * 2 1 3 33 33 H 1.08997 * 109.47440 * 120.00322 * 2 1 3 34 34 H 1.08005 * 126.29231 * 359.97438 * 4 3 2 35 35 H 0.97006 * 119.99482 * 359.97438 * 8 6 5 36 36 H 1.09006 * 109.46971 * 299.99615 * 11 9 8 37 37 H 1.08990 * 109.47506 * 59.99735 * 11 9 8 38 38 H 1.09002 * 109.47542 * 180.02562 * 11 9 8 39 39 H 1.08997 * 109.46770 * 185.00153 * 12 9 8 40 40 H 1.08995 * 109.47019 * 65.00366 * 12 9 8 41 41 H 1.00904 * 110.99913 * 303.95145 * 13 12 9 42 42 H 1.09004 * 109.47040 * 299.99934 * 14 13 12 43 43 H 1.09000 * 109.47033 * 59.99886 * 14 13 12 44 44 H 0.96996 * 120.00269 * 359.97438 * 17 15 14 45 45 H 0.97002 * 120.00022 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.46883 * 90.00006 * 27 26 5 47 47 H 1.09002 * 109.46928 * 209.99488 * 27 26 5 48 48 H 1.08995 * 109.47215 * 329.99527 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0707 3.2310 0.5369 6 6 3.9323 4.2035 1.2338 7 8 4.0255 5.3418 0.8164 8 7 4.6165 3.8308 2.3335 9 6 5.4730 4.7970 3.0257 10 1 5.0209 5.7873 2.9718 11 6 6.8496 4.8278 2.3587 12 6 5.6255 4.3850 4.4913 13 7 4.2964 4.2392 5.0998 14 6 4.4038 3.8440 6.5106 15 6 3.0237 3.7051 7.0998 16 8 2.0469 3.9142 6.4120 17 7 2.8751 3.3485 8.3910 18 6 1.6196 3.2216 8.9268 19 1 0.7497 3.4077 8.3144 20 6 1.4662 2.8534 10.2579 21 7 2.5247 2.6264 11.0029 22 14 -0.2443 2.6812 10.9882 23 1 -0.7224 1.2870 10.8060 24 1 -0.1988 3.0034 12.4372 25 1 -1.1719 3.6161 10.3021 26 6 2.2976 3.4738 -0.6205 27 6 2.2067 4.7800 -1.3667 28 7 1.6771 2.3690 -0.9305 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3211 1.3996 1.7285 35 1 4.5418 2.9228 2.6667 36 1 7.3017 3.8374 2.4126 37 1 6.7410 5.1212 1.3146 38 1 7.4870 5.5463 2.8739 39 1 6.1884 5.1495 5.0269 40 1 6.1574 3.4354 4.5484 41 1 3.7589 5.0875 5.0021 42 1 4.9275 2.8906 6.5820 43 1 4.9581 4.6050 7.0599 44 1 3.6564 3.1809 8.9409 45 1 2.4177 2.3697 11.9323 46 1 2.9784 4.8136 -2.1358 47 1 1.2251 4.8643 -1.8332 48 1 2.3506 5.6066 -0.6711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497926566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:13 Heat of formation + Delta-G solvation = -33.146325 kcal Electronic energy + Delta-G solvation = -28818.643675 eV Core-core repulsion = 24715.733881 eV Total energy + Delta-G solvation = -4102.909794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40609 -40.39485 -40.01691 -37.67902 -36.01864 -35.69241 -35.03988 -33.25172 -32.77235 -31.98901 -30.48150 -28.91654 -28.63778 -26.67884 -24.99658 -24.42745 -23.32312 -22.22154 -21.21252 -20.99409 -20.50484 -19.88182 -18.63705 -17.82302 -17.44774 -17.06102 -16.66102 -16.46988 -16.25515 -16.03614 -15.73200 -15.34933 -15.18150 -15.11219 -14.81523 -14.74463 -14.53566 -14.05165 -13.95968 -13.82117 -13.52859 -13.30567 -13.16661 -13.06220 -13.02801 -12.94012 -12.84006 -12.75913 -12.62417 -12.40823 -12.33418 -12.12979 -11.79169 -11.73249 -11.49571 -10.76297 -10.34386 -10.32664 -9.99783 -9.99624 -9.53284 -9.30535 -8.46108 -5.94264 0.57466 1.14904 1.37784 1.41912 1.44128 1.54112 2.08381 2.29228 2.38721 2.57419 2.94391 3.21826 3.37170 3.56302 3.72865 3.88929 3.97024 4.06515 4.19051 4.23805 4.33249 4.37436 4.38560 4.46611 4.51889 4.57359 4.63905 4.71123 4.75472 4.76901 4.78523 4.81868 4.86917 5.00475 5.03106 5.15014 5.21029 5.34518 5.41761 5.56175 5.69145 5.90277 5.93953 6.12357 6.34804 6.56217 6.62093 6.79928 7.14501 7.45347 7.58974 8.14908 8.71259 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.009645 B = 0.002656 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.232152 B =10538.231130 C =12589.827370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.356 5.356 4 C 0.119 3.881 5 C -0.318 4.318 6 C 0.593 3.407 7 O -0.587 6.587 8 N -0.698 5.698 9 C 0.148 3.852 10 H 0.062 0.938 11 C -0.151 4.151 12 C 0.055 3.945 13 N -0.677 5.677 14 C 0.066 3.934 15 C 0.437 3.563 16 O -0.624 6.624 17 N -0.574 5.574 18 C -0.332 4.332 19 H 0.076 0.924 20 C -0.011 4.011 21 N -0.920 5.920 22 Si 0.989 3.011 23 H -0.270 1.270 24 H -0.271 1.271 25 H -0.275 1.275 26 C 0.110 3.890 27 C -0.071 4.071 28 N -0.326 5.326 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.218 0.782 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.338 0.662 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.397 0.603 45 H 0.277 0.723 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -5.825 -18.735 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.002 4.002 3 N -0.134 5.134 4 C -0.034 4.034 5 C -0.332 4.332 6 C 0.382 3.618 7 O -0.469 6.469 8 N -0.348 5.348 9 C 0.043 3.957 10 H 0.080 0.920 11 C -0.210 4.210 12 C -0.074 4.074 13 N -0.309 5.309 14 C -0.066 4.066 15 C 0.225 3.775 16 O -0.511 6.511 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.094 0.906 20 C -0.211 4.211 21 N -0.561 5.561 22 Si 0.813 3.187 23 H -0.195 1.195 24 H -0.196 1.196 25 H -0.200 1.200 26 C -0.057 4.057 27 C -0.129 4.129 28 N -0.148 5.148 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.149 0.851 34 H 0.234 0.766 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.156 0.844 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.231 0.769 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.155 -6.332 -20.298 22.434 hybrid contribution 0.105 0.768 1.965 2.112 sum 7.260 -5.564 -18.333 20.488 Atomic orbital electron populations 1.22031 0.93803 1.04200 1.02056 1.22248 0.96260 0.75220 1.06471 1.48866 1.33427 1.11288 1.19808 1.23621 0.91771 0.93197 0.94827 1.20342 1.13037 0.95558 1.04310 1.17387 0.78247 0.86175 0.79969 1.90680 1.66888 1.21476 1.67820 1.45584 1.46453 1.15594 1.27171 1.20932 0.91323 0.92691 0.90756 0.92012 1.22047 0.95079 1.03477 1.00376 1.22381 0.89707 1.02946 0.92382 1.60091 1.16060 1.40694 1.14061 1.21551 0.92613 1.03146 0.89313 1.20974 0.92257 0.82100 0.82153 1.90512 1.42787 1.56619 1.61141 1.41928 1.08425 1.60965 1.09829 1.19625 0.85883 1.45605 0.95090 0.90580 1.25977 1.02816 0.96329 0.95999 1.69664 1.30548 1.47068 1.08815 0.84981 0.77464 0.78760 0.77474 1.19542 1.19588 1.20022 1.22732 0.93217 0.95561 0.94191 1.20265 1.03112 0.90041 0.99510 1.77047 1.25262 0.97386 1.15119 0.93563 0.92817 0.87885 0.87788 0.85091 0.76595 0.75499 0.90715 0.93660 0.90115 0.92193 0.88209 0.84375 0.86979 0.91670 0.76922 0.91324 0.89583 0.90327 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.09 71.98 0.73 -1.48 16 2 C 0.12 1.38 7.21 86.38 0.62 2.00 16 3 N -0.36 -7.29 3.65 -346.29 -1.26 -8.55 16 4 C 0.12 2.37 10.94 84.28 0.92 3.29 16 5 C -0.32 -8.42 6.13 -20.15 -0.12 -8.55 16 6 C 0.59 16.92 7.78 86.67 0.67 17.60 16 7 O -0.59 -20.32 14.58 -4.05 -0.06 -20.38 16 8 N -0.70 -15.68 4.79 -445.81 -2.14 -17.81 16 9 C 0.15 3.09 2.81 44.99 0.13 3.22 16 10 H 0.06 1.62 7.58 -2.39 -0.02 1.61 16 11 C -0.15 -2.49 9.48 71.98 0.68 -1.81 16 12 C 0.05 1.04 5.24 86.31 0.45 1.49 16 13 N -0.68 -19.02 5.85 -517.92 -3.03 -22.05 16 14 C 0.07 2.03 6.17 85.56 0.53 2.55 16 15 C 0.44 19.93 7.82 87.66 0.69 20.61 16 16 O -0.62 -33.90 15.78 -3.06 -0.05 -33.95 16 17 N -0.57 -28.53 5.29 -306.99 -1.62 -30.15 16 18 C -0.33 -18.59 9.68 84.04 0.81 -17.78 16 19 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 20 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.73 13.05 21.66 0.28 -48.44 16 22 Si 0.99 42.45 29.55 68.60 2.03 44.47 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 26 C 0.11 3.06 7.26 43.52 0.32 3.38 16 27 C -0.07 -1.74 9.92 71.24 0.71 -1.04 16 28 N -0.33 -8.67 12.33 -46.67 -0.58 -9.24 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.13 0.77 8.06 -2.39 -0.02 0.75 16 34 H 0.22 2.52 7.46 -2.91 -0.02 2.50 16 35 H 0.41 7.59 7.53 -92.70 -0.70 6.89 16 36 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.34 11.13 8.43 -89.69 -0.76 10.37 16 42 H 0.11 2.91 8.14 -2.38 -0.02 2.89 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.40 18.59 7.90 -92.71 -0.73 17.86 16 45 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.08 2.21 6.55 -2.39 -0.02 2.19 16 Total: -1.00 -78.16 407.04 -0.01 -78.17 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -1.18 Total: 44.56 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 7.60 Total: 23.35 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -8.34 Total: -136.24 kcal Atomic # 8 Polarization: -54.21 SS G_CDS: -0.11 Total: -54.32 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -78.16 -0.01 -78.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497926566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.025 kcal (2) G-P(sol) polarization free energy of solvation -78.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds