Wall clock time and date at job start Tue Mar 31 2020 19:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.52997 * 109.47299 * 239.99237 * 2 1 3 5 5 N 1.46495 * 109.47219 * 184.99993 * 4 2 1 6 6 C 1.46502 * 119.99993 * 270.00001 * 5 4 2 7 7 C 1.36938 * 120.00130 * 90.00268 * 5 4 2 8 8 H 1.08001 * 119.99851 * 20.30025 * 7 5 4 9 9 C 1.38813 * 120.00058 * 200.30540 * 7 5 4 10 10 N 1.31619 * 120.00019 * 15.01237 * 9 7 5 11 11 Si 1.86799 * 119.99631 * 195.01449 * 9 7 5 12 12 H 1.48506 * 109.47353 * 85.00188 * 11 9 7 13 13 H 1.48500 * 109.46910 * 204.99873 * 11 9 7 14 14 H 1.48499 * 109.47594 * 325.00087 * 11 9 7 15 15 N 1.46510 * 109.47095 * 119.99090 * 2 1 3 16 16 C 1.34772 * 120.00471 * 275.00144 * 15 2 1 17 17 O 1.21600 * 119.99705 * 0.02562 * 16 15 2 18 18 C 1.47518 * 120.00081 * 179.97438 * 16 15 2 19 19 C 1.36596 * 125.76972 * 180.24219 * 18 16 15 20 20 N 1.34811 * 106.83856 * 180.13626 * 19 18 16 21 21 C 1.46505 * 126.59343 * 179.90805 * 20 19 18 22 22 C 1.53175 * 109.54328 * 274.70824 * 21 20 19 23 23 C 1.53094 * 109.16594 * 176.84886 * 22 21 20 24 24 O 1.42905 * 109.41206 * 302.39355 * 23 22 21 25 25 C 1.42899 * 114.09946 * 61.15455 * 24 23 22 26 26 C 1.53093 * 109.41834 * 298.84317 * 25 24 23 27 27 N 1.40212 * 106.81123 * 359.64392 * 20 19 18 28 28 N 1.28760 * 108.36693 * 0.22660 * 27 20 19 29 29 H 1.08996 * 109.46981 * 60.00347 * 1 2 3 30 30 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47114 * 300.00446 * 1 2 3 32 32 H 1.08997 * 109.47220 * 305.00544 * 4 2 1 33 33 H 1.09001 * 109.46643 * 65.00119 * 4 2 1 34 34 H 1.09006 * 109.47169 * 95.10821 * 6 5 4 35 35 H 1.09002 * 109.47128 * 215.10637 * 6 5 4 36 36 H 1.08998 * 109.47382 * 335.10448 * 6 5 4 37 37 H 0.97000 * 119.99490 * 180.02562 * 10 9 7 38 38 H 0.96996 * 119.99179 * 94.99979 * 15 2 1 39 39 H 1.08004 * 126.58087 * 0.02562 * 19 18 16 40 40 H 1.09001 * 109.53979 * 154.53528 * 21 20 19 41 41 H 1.08998 * 109.52272 * 56.94002 * 22 21 20 42 42 H 1.09005 * 109.57543 * 296.78525 * 22 21 20 43 43 H 1.08995 * 109.48099 * 182.41223 * 23 22 21 44 44 H 1.08993 * 109.48031 * 62.37178 * 23 22 21 45 45 H 1.09004 * 109.48185 * 58.82625 * 25 24 23 46 46 H 1.09000 * 109.48249 * 178.85625 * 25 24 23 47 47 H 1.09005 * 109.51875 * 297.70162 * 26 25 24 48 48 H 1.08999 * 109.57596 * 177.54490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1904 6 6 4.3343 0.2339 -1.7612 7 6 4.0850 -1.9159 -0.6020 8 1 3.5229 -2.8298 -0.4786 9 6 5.4004 -1.8456 -0.1642 10 7 5.9903 -0.6758 -0.0379 11 14 6.3331 -3.4112 0.2458 12 1 6.9257 -3.9736 -0.9944 13 1 7.4147 -3.1034 1.2157 14 1 5.4007 -4.4014 0.8419 15 7 2.0183 -0.6905 1.1964 16 6 2.1471 -0.0181 2.3572 17 8 1.8574 1.1617 2.4118 18 6 2.6383 -0.7135 3.5619 19 6 2.8089 -0.1509 4.7949 20 7 3.2739 -1.1218 5.6062 21 6 3.6077 -0.9878 7.0265 22 6 5.0433 -0.4730 7.1691 23 6 5.3563 -0.2614 8.6527 24 8 4.4114 0.6535 9.2116 25 6 3.0565 0.2036 9.1492 26 6 2.6511 0.0106 7.6856 27 7 3.3710 -2.2861 4.8311 28 7 2.9888 -2.0090 3.6331 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7516 -0.1585 -2.1369 34 1 4.6152 0.9370 -0.9771 35 1 5.2330 -0.2047 -2.1949 36 1 3.7755 0.7583 -2.5364 37 1 6.9096 -0.6268 0.2677 38 1 2.2490 -1.6316 1.1528 39 1 2.6110 0.8754 5.0670 40 1 3.5180 -1.9580 7.5152 41 1 5.1458 0.4725 6.6367 42 1 5.7363 -1.2033 6.7512 43 1 6.3620 0.1455 8.7575 44 1 5.2931 -1.2147 9.1771 45 1 2.9632 -0.7438 9.6802 46 1 2.4055 0.9454 9.6119 47 1 2.7053 0.9660 7.1637 48 1 1.6324 -0.3741 7.6365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498428473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:17 Heat of formation + Delta-G solvation = 37.451889 kcal Electronic energy + Delta-G solvation = -30374.003725 eV Core-core repulsion = 26274.155299 eV Total energy + Delta-G solvation = -4099.848426 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.04763 -39.76947 -38.78573 -36.21600 -35.58039 -33.89916 -31.79912 -31.70873 -31.29644 -30.62437 -29.58910 -26.12280 -25.78773 -25.51768 -24.29019 -23.52459 -22.34758 -21.65089 -20.51137 -20.24617 -19.58125 -18.09922 -16.81899 -16.59528 -16.47808 -15.85917 -15.58335 -15.51187 -15.24011 -14.79636 -14.71741 -14.38055 -14.08509 -13.94804 -13.60238 -13.46634 -13.00115 -12.90461 -12.77523 -12.25852 -12.10202 -11.93503 -11.92220 -11.81588 -11.57110 -11.33184 -11.24880 -11.17936 -10.81366 -10.75953 -10.60959 -10.34384 -10.21694 -10.19992 -10.13213 -9.95539 -9.72750 -9.43237 -9.00540 -8.46785 -8.18617 -6.72132 -5.65652 -3.08892 1.34188 2.04353 2.16437 3.36122 3.45078 3.51241 3.53271 3.73388 3.90770 4.04391 4.11468 4.32825 4.41706 4.44791 4.57834 4.63423 4.80521 4.86386 5.04118 5.06493 5.17059 5.19875 5.24673 5.38127 5.42733 5.43483 5.57559 5.59501 5.70616 5.73440 5.92196 6.04030 6.14667 6.23374 6.31376 6.49125 6.51952 6.57159 6.65534 6.79313 6.94167 7.32658 7.43534 7.78906 7.86951 8.14636 8.43149 8.45360 8.95336 9.29068 9.93555 10.41579 11.38911 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003589 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.717572 B = 7798.967952 C = 9217.196162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.078 0.922 4 C 0.141 3.859 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.254 4.254 8 H 0.068 0.932 9 C 0.011 3.989 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.290 1.290 13 H -0.295 1.295 14 H -0.276 1.276 15 N -0.669 5.669 16 C 0.604 3.396 17 O -0.563 6.563 18 C -0.081 4.081 19 C 0.083 3.917 20 N -0.363 5.363 21 C 0.154 3.846 22 C -0.171 4.171 23 C 0.067 3.933 24 O -0.379 6.379 25 C 0.068 3.932 26 C -0.171 4.171 27 N -0.073 5.073 28 N -0.189 5.189 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.028 0.972 35 H 0.042 0.958 36 H -0.003 1.003 37 H 0.250 0.750 38 H 0.412 0.588 39 H 0.198 0.802 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.471 1.557 16.695 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.009 3.991 3 H 0.096 0.904 4 C 0.013 3.987 5 N -0.320 5.320 6 C 0.019 3.981 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.188 4.188 10 N -0.545 5.545 11 Si 0.725 3.275 12 H -0.217 1.217 13 H -0.221 1.221 14 H -0.201 1.201 15 N -0.317 5.317 16 C 0.387 3.613 17 O -0.442 6.442 18 C -0.220 4.220 19 C -0.073 4.073 20 N -0.149 5.149 21 C 0.052 3.948 22 C -0.210 4.210 23 C -0.010 4.010 24 O -0.297 6.297 25 C -0.010 4.010 26 C -0.210 4.210 27 N -0.053 5.053 28 N -0.063 5.063 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.015 0.985 37 H 0.060 0.940 38 H 0.249 0.751 39 H 0.214 0.786 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.123 0.877 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.038 1.085 16.808 18.255 hybrid contribution 0.630 -0.434 0.269 0.811 sum -6.408 0.651 17.078 18.252 Atomic orbital electron populations 1.22161 0.96782 1.01363 1.01550 1.21905 0.91877 0.98423 0.86863 0.90382 1.21196 0.86011 0.98001 0.93503 1.43928 0.98881 1.22701 1.66505 1.20790 0.92891 0.90434 0.93982 1.19074 0.95863 0.89881 1.33544 0.91395 1.24866 0.98555 0.96061 0.99313 1.70101 1.12591 1.21788 1.49999 0.86401 0.79925 0.83624 0.77517 1.21679 1.22124 1.20098 1.45543 1.63429 1.14816 1.07870 1.16665 0.77339 0.85404 0.81890 1.90719 1.53269 1.15001 1.85256 1.21626 1.13047 0.91387 0.95933 1.23161 0.97287 0.96533 0.90274 1.50572 1.45123 1.08829 1.10333 1.21521 0.95771 1.01655 0.75852 1.22720 0.95290 1.03832 0.99141 1.22588 0.93683 0.93946 0.90826 1.87994 1.15776 1.45150 1.80807 1.22552 0.83750 1.00937 0.93742 1.22706 0.99863 1.00292 0.98110 1.81980 1.22440 1.04349 0.96490 1.74698 1.07313 1.13487 1.10774 0.92165 0.92935 0.92934 0.93231 0.92840 0.95358 0.93888 0.98468 0.94022 0.75087 0.78569 0.86989 0.89655 0.89187 0.87707 0.92400 0.92429 0.87668 0.89345 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.27 2.88 -67.93 -0.20 2.07 16 3 H 0.08 1.70 7.58 -51.93 -0.39 1.31 16 4 C 0.14 2.81 5.36 -4.05 -0.02 2.78 16 5 N -0.60 -14.70 2.82 -181.12 -0.51 -15.21 16 6 C 0.16 4.08 9.02 59.85 0.54 4.62 16 7 C -0.25 -6.78 8.02 -15.06 -0.12 -6.90 16 8 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 9 C 0.01 0.31 5.06 -17.43 -0.09 0.22 16 10 N -0.90 -26.49 10.67 55.49 0.59 -25.90 16 11 Si 0.89 22.52 29.58 -169.99 -5.03 17.49 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 N -0.67 -13.95 4.48 -54.85 -0.25 -14.20 16 16 C 0.60 12.78 7.78 -12.48 -0.10 12.69 16 17 O -0.56 -12.67 16.53 5.28 0.09 -12.58 16 18 C -0.08 -1.55 6.99 -83.55 -0.58 -2.13 16 19 C 0.08 1.27 10.39 -16.84 -0.17 1.09 16 20 N -0.36 -5.02 3.55 -54.38 -0.19 -5.22 16 21 C 0.15 1.43 3.32 -67.75 -0.23 1.21 16 22 C -0.17 -1.54 5.75 -26.59 -0.15 -1.69 16 23 C 0.07 0.47 6.84 37.21 0.25 0.72 16 24 O -0.38 -3.14 10.77 -35.23 -0.38 -3.52 16 25 C 0.07 0.40 6.84 37.21 0.25 0.66 16 26 C -0.17 -1.20 5.13 -26.59 -0.14 -1.34 16 27 N -0.07 -1.30 13.78 60.35 0.83 -0.47 16 28 N -0.19 -3.81 12.04 32.84 0.40 -3.42 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 33 H 0.05 0.95 7.86 -51.93 -0.41 0.55 16 34 H 0.03 0.78 7.40 -51.93 -0.38 0.39 16 35 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 36 H 0.00 -0.07 7.83 -51.93 -0.41 -0.48 16 37 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.41 8.94 7.08 -40.82 -0.29 8.65 16 39 H 0.20 2.41 7.26 -52.48 -0.38 2.03 16 40 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.66 7.07 -51.93 -0.37 0.29 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -34.14 391.47 -6.57 -40.70 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -7.62 Total: 4.55 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.40 Total: 11.87 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: 0.87 Total: -64.41 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.29 Total: -16.10 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.14 -6.57 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498428473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.153 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds