Wall clock time and date at job start Tue Mar 31 2020 19:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.52997 * 109.47299 * 239.99237 * 2 1 3 5 5 N 1.46495 * 109.47219 * 184.99993 * 4 2 1 6 6 C 1.46502 * 119.99993 * 270.00001 * 5 4 2 7 7 C 1.36938 * 120.00130 * 90.00268 * 5 4 2 8 8 H 1.08001 * 119.99851 * 20.30025 * 7 5 4 9 9 C 1.38813 * 120.00058 * 200.30540 * 7 5 4 10 10 N 1.31619 * 120.00019 * 15.01237 * 9 7 5 11 11 Si 1.86799 * 119.99631 * 195.01449 * 9 7 5 12 12 H 1.48506 * 109.47353 * 85.00188 * 11 9 7 13 13 H 1.48500 * 109.46910 * 204.99873 * 11 9 7 14 14 H 1.48499 * 109.47594 * 325.00087 * 11 9 7 15 15 N 1.46510 * 109.47095 * 119.99090 * 2 1 3 16 16 C 1.34772 * 120.00471 * 275.00144 * 15 2 1 17 17 O 1.21600 * 119.99705 * 0.02562 * 16 15 2 18 18 C 1.47518 * 120.00081 * 179.97438 * 16 15 2 19 19 C 1.36596 * 125.76972 * 180.24219 * 18 16 15 20 20 N 1.34811 * 106.83856 * 180.13626 * 19 18 16 21 21 C 1.46505 * 126.59343 * 179.90805 * 20 19 18 22 22 C 1.53175 * 109.54328 * 274.70824 * 21 20 19 23 23 C 1.53094 * 109.16594 * 176.84886 * 22 21 20 24 24 O 1.42905 * 109.41206 * 302.39355 * 23 22 21 25 25 C 1.42899 * 114.09946 * 61.15455 * 24 23 22 26 26 C 1.53093 * 109.41834 * 298.84317 * 25 24 23 27 27 N 1.40212 * 106.81123 * 359.64392 * 20 19 18 28 28 N 1.28760 * 108.36693 * 0.22660 * 27 20 19 29 29 H 1.08996 * 109.46981 * 60.00347 * 1 2 3 30 30 H 1.08997 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47114 * 300.00446 * 1 2 3 32 32 H 1.08997 * 109.47220 * 305.00544 * 4 2 1 33 33 H 1.09001 * 109.46643 * 65.00119 * 4 2 1 34 34 H 1.09006 * 109.47169 * 95.10821 * 6 5 4 35 35 H 1.09002 * 109.47128 * 215.10637 * 6 5 4 36 36 H 1.08998 * 109.47382 * 335.10448 * 6 5 4 37 37 H 0.97000 * 119.99490 * 180.02562 * 10 9 7 38 38 H 0.96996 * 119.99179 * 94.99979 * 15 2 1 39 39 H 1.08004 * 126.58087 * 0.02562 * 19 18 16 40 40 H 1.09001 * 109.53979 * 154.53528 * 21 20 19 41 41 H 1.08998 * 109.52272 * 56.94002 * 22 21 20 42 42 H 1.09005 * 109.57543 * 296.78525 * 22 21 20 43 43 H 1.08995 * 109.48099 * 182.41223 * 23 22 21 44 44 H 1.08993 * 109.48031 * 62.37178 * 23 22 21 45 45 H 1.09004 * 109.48185 * 58.82625 * 25 24 23 46 46 H 1.09000 * 109.48249 * 178.85625 * 25 24 23 47 47 H 1.09005 * 109.51875 * 297.70162 * 26 25 24 48 48 H 1.08999 * 109.57596 * 177.54490 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.5000 -0.8265 -1.1904 6 6 4.3343 0.2339 -1.7612 7 6 4.0850 -1.9159 -0.6020 8 1 3.5229 -2.8298 -0.4786 9 6 5.4004 -1.8456 -0.1642 10 7 5.9903 -0.6758 -0.0379 11 14 6.3331 -3.4112 0.2458 12 1 6.9257 -3.9736 -0.9944 13 1 7.4147 -3.1034 1.2157 14 1 5.4007 -4.4014 0.8419 15 7 2.0183 -0.6905 1.1964 16 6 2.1471 -0.0181 2.3572 17 8 1.8574 1.1617 2.4118 18 6 2.6383 -0.7135 3.5619 19 6 2.8089 -0.1509 4.7949 20 7 3.2739 -1.1218 5.6062 21 6 3.6077 -0.9878 7.0265 22 6 5.0433 -0.4730 7.1691 23 6 5.3563 -0.2614 8.6527 24 8 4.4114 0.6535 9.2116 25 6 3.0565 0.2036 9.1492 26 6 2.6511 0.0106 7.6856 27 7 3.3710 -2.2861 4.8311 28 7 2.9888 -2.0090 3.6331 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6054 -1.7199 -1.2950 33 1 1.7516 -0.1585 -2.1369 34 1 4.6152 0.9370 -0.9771 35 1 5.2330 -0.2047 -2.1949 36 1 3.7755 0.7583 -2.5364 37 1 6.9096 -0.6268 0.2677 38 1 2.2490 -1.6316 1.1528 39 1 2.6110 0.8754 5.0670 40 1 3.5180 -1.9580 7.5152 41 1 5.1458 0.4725 6.6367 42 1 5.7363 -1.2033 6.7512 43 1 6.3620 0.1455 8.7575 44 1 5.2931 -1.2147 9.1771 45 1 2.9632 -0.7438 9.6802 46 1 2.4055 0.9454 9.6119 47 1 2.7053 0.9660 7.1637 48 1 1.6324 -0.3741 7.6365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498428473.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:16 Heat of formation + Delta-G solvation = 12.820128 kcal Electronic energy + Delta-G solvation = -30375.071838 eV Core-core repulsion = 26274.155299 eV Total energy + Delta-G solvation = -4100.916539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.32345 -40.59793 -40.22249 -37.99283 -36.49600 -35.70166 -33.26677 -32.68143 -32.34447 -32.15723 -31.04330 -28.01859 -27.35418 -26.66508 -25.19646 -24.61871 -23.43882 -23.39639 -21.91277 -21.24821 -21.12339 -19.37638 -18.61139 -17.63207 -17.29484 -17.19808 -16.89925 -16.75377 -16.54888 -15.92813 -15.82323 -15.71217 -15.45555 -15.17782 -14.99690 -14.93723 -14.63629 -14.45219 -13.85269 -13.52423 -13.38292 -13.34033 -13.09960 -12.85643 -12.77698 -12.71757 -12.62419 -12.55119 -12.37935 -12.26644 -12.13210 -11.96740 -11.94522 -11.66950 -11.52098 -11.25464 -11.06550 -10.76256 -10.58133 -10.38402 -9.78790 -8.76510 -7.78442 -5.21194 0.09593 0.67985 0.97914 1.43117 1.45444 1.51333 2.24262 2.48313 2.53231 2.85747 3.12686 3.21564 3.37993 3.40887 3.65941 3.72685 3.76349 3.78169 3.90835 4.09218 4.12608 4.17723 4.20977 4.43786 4.47053 4.52291 4.55719 4.59058 4.72272 4.74060 4.78686 4.86422 4.87516 4.92980 4.93775 5.03134 5.03547 5.20677 5.35807 5.41107 5.43194 5.67465 5.74113 5.76583 6.14965 6.34671 6.63277 6.94868 7.19140 7.32498 7.92382 8.35363 9.24981 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.012295 B = 0.003589 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.717572 B = 7798.967952 C = 9217.196162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.119 3.881 3 H 0.049 0.951 4 C 0.139 3.861 5 N -0.611 5.611 6 C 0.178 3.822 7 C -0.240 4.240 8 H 0.075 0.925 9 C -0.040 4.040 10 N -0.932 5.932 11 Si 0.944 3.056 12 H -0.285 1.285 13 H -0.308 1.308 14 H -0.269 1.269 15 N -0.674 5.674 16 C 0.597 3.403 17 O -0.585 6.585 18 C -0.114 4.114 19 C 0.103 3.897 20 N -0.343 5.343 21 C 0.143 3.857 22 C -0.168 4.168 23 C 0.072 3.928 24 O -0.397 6.397 25 C 0.067 3.933 26 C -0.165 4.165 27 N -0.091 5.091 28 N -0.222 5.222 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.081 0.919 34 H -0.007 1.007 35 H 0.017 0.983 36 H 0.033 0.967 37 H 0.240 0.760 38 H 0.407 0.593 39 H 0.226 0.774 40 H 0.130 0.870 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.122 0.878 47 H 0.084 0.916 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.141 1.124 17.968 20.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 H 0.067 0.933 4 C 0.013 3.987 5 N -0.333 5.333 6 C 0.033 3.967 7 C -0.370 4.370 8 H 0.092 0.908 9 C -0.236 4.236 10 N -0.580 5.580 11 Si 0.775 3.225 12 H -0.212 1.212 13 H -0.236 1.236 14 H -0.194 1.194 15 N -0.321 5.321 16 C 0.382 3.618 17 O -0.466 6.466 18 C -0.254 4.254 19 C -0.055 4.055 20 N -0.128 5.128 21 C 0.043 3.957 22 C -0.207 4.207 23 C -0.005 4.005 24 O -0.315 6.315 25 C -0.010 4.010 26 C -0.204 4.204 27 N -0.070 5.070 28 N -0.095 5.095 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.011 0.989 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.243 0.757 39 H 0.242 0.758 40 H 0.147 0.853 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.130 0.870 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.140 0.860 47 H 0.102 0.898 48 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.745 0.616 18.088 20.100 hybrid contribution 1.093 -0.264 -0.062 1.126 sum -7.652 0.352 18.025 19.586 Atomic orbital electron populations 1.22032 0.93362 1.02615 1.02458 1.21854 0.94441 0.96414 0.86111 0.93271 1.21427 0.83136 0.99440 0.94733 1.44148 1.00977 1.22031 1.66190 1.20511 0.92734 0.89872 0.93600 1.19340 0.95642 0.90671 1.31392 0.90766 1.25426 0.99704 0.97848 1.00578 1.70266 1.12181 1.23295 1.52214 0.85606 0.78605 0.81355 0.76984 1.21217 1.23610 1.19383 1.45657 1.63482 1.14531 1.08396 1.16959 0.76976 0.85295 0.82556 1.90684 1.54435 1.15756 1.85767 1.21608 1.15326 0.91798 0.96677 1.23507 0.95383 0.97519 0.89108 1.50894 1.42995 1.07380 1.11536 1.22068 0.96701 1.03532 0.73388 1.22704 0.94745 1.02550 1.00723 1.22625 0.93919 0.94856 0.89136 1.87980 1.16869 1.45976 1.80712 1.22735 0.82910 1.02480 0.92860 1.22730 0.99744 0.99200 0.98678 1.81851 1.22864 1.05963 0.96333 1.74651 1.08549 1.14235 1.12046 0.89480 0.91458 0.93793 0.91701 0.90058 0.98852 0.96427 0.94856 0.95105 0.75701 0.75812 0.85267 0.91216 0.90381 0.87036 0.90426 0.90569 0.86009 0.89781 0.88096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.48 71.98 0.68 -3.52 16 2 C 0.12 4.49 2.88 44.99 0.13 4.62 16 3 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 4 C 0.14 5.26 5.36 86.38 0.46 5.72 16 5 N -0.61 -29.73 2.82 -726.94 -2.05 -31.78 16 6 C 0.18 8.92 9.02 127.77 1.15 10.07 16 7 C -0.24 -12.79 8.02 84.03 0.67 -12.11 16 8 H 0.07 3.82 7.86 -2.91 -0.02 3.80 16 9 C -0.04 -2.28 5.06 84.86 0.43 -1.85 16 10 N -0.93 -56.61 10.67 21.65 0.23 -56.38 16 11 Si 0.94 47.04 29.58 68.60 2.03 49.07 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 13 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 14 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 15 N -0.67 -28.27 4.48 -445.70 -2.00 -30.27 16 16 C 0.60 25.73 7.78 86.69 0.67 26.41 16 17 O -0.58 -26.72 16.53 -4.03 -0.07 -26.79 16 18 C -0.11 -4.44 6.99 40.82 0.29 -4.16 16 19 C 0.10 3.06 10.39 83.85 0.87 3.93 16 20 N -0.34 -9.21 3.55 -325.97 -1.16 -10.37 16 21 C 0.14 2.41 3.32 45.11 0.15 2.56 16 22 C -0.17 -2.85 5.75 30.68 0.18 -2.68 16 23 C 0.07 0.86 6.84 72.01 0.49 1.36 16 24 O -0.40 -5.62 10.77 -148.98 -1.60 -7.22 16 25 C 0.07 0.59 6.84 72.01 0.49 1.08 16 26 C -0.16 -1.90 5.13 30.68 0.16 -1.75 16 27 N -0.09 -3.22 13.78 37.02 0.51 -2.71 16 28 N -0.22 -9.08 12.04 -50.00 -0.60 -9.68 16 29 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 2.28 8.03 -2.39 -0.02 2.26 16 33 H 0.08 2.64 7.86 -2.39 -0.02 2.62 16 34 H -0.01 -0.39 7.40 -2.38 -0.02 -0.41 16 35 H 0.02 0.93 7.21 -2.39 -0.02 0.92 16 36 H 0.03 1.39 7.83 -2.39 -0.02 1.38 16 37 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.41 17.79 7.08 -92.71 -0.66 17.13 16 39 H 0.23 5.23 7.26 -2.91 -0.02 5.21 16 40 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 46 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.08 1.07 7.07 -2.38 -0.02 1.06 16 48 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.11 391.47 2.43 -73.68 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.31 Total: 22.75 kcal Atomic # 6 Polarization: 22.86 SS G_CDS: 6.83 Total: 29.69 kcal Atomic # 7 Polarization: -136.11 SS G_CDS: -5.07 Total: -141.18 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.67 Total: -34.01 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -76.11 2.43 -73.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498428473.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.502 kcal (2) G-P(sol) polarization free energy of solvation -76.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds