Wall clock time and date at job start Tue Mar 31 2020 19:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08993 * 109.47248 * 2 1 4 4 C 1.53008 * 109.47115 * 120.00167 * 2 1 3 5 5 N 1.46498 * 109.47011 * 174.99843 * 4 2 1 6 6 C 1.46505 * 120.00097 * 269.99918 * 5 4 2 7 7 C 1.36939 * 119.99741 * 90.00071 * 5 4 2 8 8 H 1.07995 * 120.00565 * 339.78927 * 7 5 4 9 9 C 1.38818 * 119.99534 * 160.06021 * 7 5 4 10 10 N 1.31617 * 119.99989 * 344.56775 * 9 7 5 11 11 Si 1.86798 * 119.99486 * 164.56233 * 9 7 5 12 12 H 1.48504 * 109.47407 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47148 * 120.00323 * 11 9 7 14 14 H 1.48499 * 109.47279 * 240.00201 * 11 9 7 15 15 N 1.46507 * 109.47182 * 239.99855 * 2 1 3 16 16 C 1.34780 * 119.99478 * 85.00142 * 15 2 1 17 17 O 1.21587 * 120.00010 * 0.02562 * 16 15 2 18 18 C 1.47521 * 119.99504 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.76896 * 179.72072 * 18 16 15 20 20 N 1.34817 * 106.84097 * 179.89837 * 19 18 16 21 21 C 1.46494 * 126.59528 * 180.13127 * 20 19 18 22 22 C 1.53178 * 109.54725 * 35.06080 * 21 20 19 23 23 C 1.53096 * 109.15906 * 183.24199 * 22 21 20 24 24 O 1.42903 * 109.48744 * 57.47713 * 23 22 21 25 25 C 1.42906 * 114.09932 * 298.88639 * 24 23 22 26 26 C 1.53091 * 109.41019 * 61.15790 * 25 24 23 27 27 N 1.40209 * 106.80660 * 0.35383 * 20 19 18 28 28 N 1.28757 * 108.36891 * 359.77313 * 27 20 19 29 29 H 1.09003 * 109.47597 * 299.99676 * 1 2 3 30 30 H 1.09000 * 109.47350 * 59.99698 * 1 2 3 31 31 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46956 * 54.99604 * 4 2 1 33 33 H 1.08994 * 109.46813 * 294.99919 * 4 2 1 34 34 H 1.09001 * 109.47044 * 264.78659 * 6 5 4 35 35 H 1.08998 * 109.46786 * 24.78383 * 6 5 4 36 36 H 1.08996 * 109.47239 * 144.78470 * 6 5 4 37 37 H 0.97003 * 119.99495 * 179.97438 * 10 9 7 38 38 H 0.96993 * 119.99970 * 265.00278 * 15 2 1 39 39 H 1.08002 * 126.58140 * 0.03099 * 19 18 16 40 40 H 1.08996 * 109.54300 * 155.24570 * 21 20 19 41 41 H 1.08993 * 109.51976 * 303.06465 * 22 21 20 42 42 H 1.09004 * 109.51549 * 63.24921 * 22 21 20 43 43 H 1.09004 * 109.41083 * 297.49731 * 23 22 21 44 44 H 1.08997 * 109.48543 * 177.50462 * 23 22 21 45 45 H 1.08999 * 109.48047 * 301.17770 * 25 24 23 46 46 H 1.08993 * 109.48501 * 181.13902 * 25 24 23 47 47 H 1.09008 * 109.52154 * 182.48867 * 26 25 24 48 48 H 1.09000 * 109.57827 * 62.32911 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2798 0.1648 1.7240 8 1 3.8655 1.1485 1.8881 9 6 5.6045 -0.0934 2.0488 10 7 6.0306 -1.3357 2.1359 11 14 6.7822 1.3223 2.3620 12 1 6.0610 2.6106 2.2029 13 1 7.3191 1.2233 3.7430 14 1 7.9028 1.2584 1.3896 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8583 1.1616 -2.4116 18 6 2.6382 -0.7138 -3.5618 19 6 2.8082 -0.1515 -4.7950 20 7 3.2728 -1.1226 -5.6064 21 6 3.6065 -0.9887 -7.0266 22 6 4.1940 0.4019 -7.2861 23 6 4.4641 0.5616 -8.7845 24 8 3.2513 0.3570 -9.5120 25 6 2.6830 -0.9435 -9.3450 26 6 2.3393 -1.1629 -7.8694 27 7 3.3703 -2.2867 -4.8310 28 7 2.9887 -2.0093 -3.6329 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1369 34 1 4.3666 -2.7317 1.3247 35 1 3.4368 -2.4279 -0.1623 36 1 5.0393 -1.6838 0.0529 37 1 6.9564 -1.5160 2.3625 38 1 2.2489 -1.6318 -1.1526 39 1 2.6105 0.8748 -5.0671 40 1 4.3358 -1.7501 -7.3031 41 1 3.4847 1.1632 -6.9618 42 1 5.1266 0.5123 -6.7326 43 1 5.2052 -0.1732 -9.0994 44 1 4.8409 1.5653 -8.9811 45 1 3.4008 -1.6980 -9.6671 46 1 1.7768 -1.0241 -9.9451 47 1 1.9466 -2.1706 -7.7327 48 1 1.5909 -0.4348 -7.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498428476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:20 Heat of formation + Delta-G solvation = 39.459189 kcal Electronic energy + Delta-G solvation = -29819.661860 eV Core-core repulsion = 25719.900477 eV Total energy + Delta-G solvation = -4099.761383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.30292 -39.91887 -39.05614 -36.35271 -35.76579 -34.03033 -31.98510 -31.84704 -31.44184 -30.73376 -29.85624 -26.11293 -25.99408 -25.56248 -24.43768 -23.75177 -22.56401 -21.71260 -20.63385 -20.38921 -19.93776 -18.25391 -16.89183 -16.74964 -16.67353 -16.09743 -15.82953 -15.54392 -15.28989 -14.98933 -14.91786 -14.61595 -14.26173 -14.05074 -13.72472 -13.58104 -13.21451 -13.09260 -12.78664 -12.39187 -12.14564 -12.09798 -12.07129 -11.94660 -11.72394 -11.46282 -11.39416 -11.25721 -10.99350 -10.79828 -10.59194 -10.55413 -10.40933 -10.31010 -10.10798 -9.94899 -9.80216 -9.66081 -9.26681 -8.59585 -8.38708 -6.71284 -5.66938 -3.10333 1.10202 1.81693 1.87191 3.24064 3.41727 3.49206 3.50885 3.52574 3.65381 3.79627 3.94452 4.19481 4.20695 4.28020 4.51118 4.55281 4.62872 4.69466 4.84577 4.90905 5.01800 5.03884 5.07820 5.18637 5.31810 5.36110 5.37162 5.52254 5.52502 5.66515 5.80644 5.89876 6.00320 6.14605 6.24458 6.25866 6.49023 6.53515 6.57425 6.76170 6.84250 7.09810 7.44477 7.76544 7.85696 7.87532 8.12661 8.43101 8.64869 9.28449 9.92272 10.39391 11.37890 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002797 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.931445 B =10008.008819 C =10915.083318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 H 0.086 0.914 4 C 0.142 3.858 5 N -0.599 5.599 6 C 0.168 3.832 7 C -0.250 4.250 8 H 0.069 0.931 9 C 0.000 4.000 10 N -0.907 5.907 11 Si 0.901 3.099 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.685 5.685 16 C 0.601 3.399 17 O -0.551 6.551 18 C -0.089 4.089 19 C 0.088 3.912 20 N -0.361 5.361 21 C 0.152 3.848 22 C -0.172 4.172 23 C 0.067 3.933 24 O -0.379 6.379 25 C 0.066 3.934 26 C -0.168 4.168 27 N -0.068 5.068 28 N -0.198 5.198 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.029 0.971 35 H -0.003 1.003 36 H 0.041 0.959 37 H 0.250 0.750 38 H 0.405 0.595 39 H 0.200 0.800 40 H 0.114 0.886 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.803 -0.053 -23.315 24.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.321 5.321 6 C 0.023 3.977 7 C -0.379 4.379 8 H 0.087 0.913 9 C -0.198 4.198 10 N -0.552 5.552 11 Si 0.731 3.269 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.335 5.335 16 C 0.384 3.616 17 O -0.429 6.429 18 C -0.228 4.228 19 C -0.068 4.068 20 N -0.146 5.146 21 C 0.050 3.950 22 C -0.211 4.211 23 C -0.010 4.010 24 O -0.297 6.297 25 C -0.011 4.011 26 C -0.207 4.207 27 N -0.048 5.048 28 N -0.072 5.072 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.015 0.985 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.242 0.758 39 H 0.217 0.783 40 H 0.132 0.868 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.077 0.923 44 H 0.125 0.875 45 H 0.077 0.923 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.514 -0.656 -23.383 24.569 hybrid contribution 0.877 1.062 0.292 1.408 sum -6.637 0.406 -23.091 24.029 Atomic orbital electron populations 1.22129 0.96381 1.01421 1.01808 1.22004 0.92240 0.98966 0.85948 0.89579 1.21056 0.85921 0.97648 0.93982 1.43872 0.99079 1.22857 1.66306 1.20807 0.94315 0.88811 0.93733 1.19218 0.92820 0.90380 1.35521 0.91327 1.24926 0.98489 0.96040 1.00339 1.70102 1.15565 1.16942 1.52620 0.86233 0.81288 0.82079 0.77277 1.20304 1.21835 1.21793 1.45863 1.64545 1.14445 1.08635 1.16728 0.77550 0.85572 0.81757 1.90756 1.52339 1.14848 1.84948 1.21659 1.13644 0.91402 0.96144 1.23224 0.96650 0.96743 0.90168 1.50600 1.44860 1.08741 1.10369 1.21584 0.98475 1.00077 0.74835 1.22726 1.03524 0.95466 0.99410 1.22570 0.86754 1.03200 0.88492 1.88001 1.39821 1.32700 1.69166 1.22584 0.99361 0.85112 0.94091 1.22709 0.97148 1.04647 0.96215 1.81985 1.22162 1.04376 0.96256 1.74660 1.07945 1.13299 1.11270 0.91812 0.92875 0.92950 0.93988 0.91766 0.95240 0.98515 0.94006 0.93931 0.75763 0.78343 0.86773 0.89347 0.88997 0.92299 0.87502 0.92317 0.87726 0.89304 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 37.15 0.35 -2.00 16 2 C 0.12 2.13 2.88 -67.93 -0.20 1.93 16 3 H 0.09 1.82 7.58 -51.93 -0.39 1.42 16 4 C 0.14 2.86 5.29 -4.04 -0.02 2.84 16 5 N -0.60 -14.99 2.78 -181.12 -0.50 -15.50 16 6 C 0.17 4.18 8.52 59.85 0.51 4.69 16 7 C -0.25 -6.96 9.67 -15.06 -0.15 -7.11 16 8 H 0.07 1.89 7.87 -52.49 -0.41 1.47 16 9 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16 10 N -0.91 -26.92 10.67 55.49 0.59 -26.33 16 11 Si 0.90 22.52 29.58 -169.99 -5.03 17.49 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 15 N -0.68 -12.64 4.52 -54.85 -0.25 -12.89 16 16 C 0.60 11.17 7.78 -12.47 -0.10 11.07 16 17 O -0.55 -11.25 16.52 5.29 0.09 -11.17 16 18 C -0.09 -1.45 6.99 -83.55 -0.58 -2.03 16 19 C 0.09 1.12 10.40 -16.83 -0.18 0.94 16 20 N -0.36 -4.09 3.55 -54.38 -0.19 -4.28 16 21 C 0.15 1.11 3.31 -67.75 -0.22 0.88 16 22 C -0.17 -1.03 5.15 -26.59 -0.14 -1.16 16 23 C 0.07 0.33 6.84 37.21 0.25 0.59 16 24 O -0.38 -2.54 10.77 -35.23 -0.38 -2.92 16 25 C 0.07 0.32 6.84 37.20 0.25 0.57 16 26 C -0.17 -1.01 5.75 -26.59 -0.15 -1.16 16 27 N -0.07 -1.01 13.78 60.35 0.83 -0.18 16 28 N -0.20 -3.32 12.04 32.84 0.40 -2.93 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 33 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 35 H 0.00 -0.08 5.76 -51.93 -0.30 -0.37 16 36 H 0.04 1.15 7.20 -51.93 -0.37 0.77 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.41 7.41 5.89 -40.82 -0.24 7.17 16 39 H 0.20 1.98 7.27 -52.49 -0.38 1.60 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.54 7.08 -51.93 -0.37 0.17 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.11 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 389.55 15.07 5.87 5.87 Total: -1.00 -34.50 389.55 -6.50 -41.00 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.48 Total: 1.87 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.45 Total: 9.96 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.87 Total: -62.11 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -0.29 Total: -14.09 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.50 -6.50 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498428476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.463 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds