Wall clock time and date at job start Tue Mar 31 2020 19:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08993 * 109.47248 * 2 1 4 4 C 1.53008 * 109.47115 * 120.00167 * 2 1 3 5 5 N 1.46498 * 109.47011 * 174.99843 * 4 2 1 6 6 C 1.46505 * 120.00097 * 269.99918 * 5 4 2 7 7 C 1.36939 * 119.99741 * 90.00071 * 5 4 2 8 8 H 1.07995 * 120.00565 * 339.78927 * 7 5 4 9 9 C 1.38818 * 119.99534 * 160.06021 * 7 5 4 10 10 N 1.31617 * 119.99989 * 344.56775 * 9 7 5 11 11 Si 1.86798 * 119.99486 * 164.56233 * 9 7 5 12 12 H 1.48504 * 109.47407 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47148 * 120.00323 * 11 9 7 14 14 H 1.48499 * 109.47279 * 240.00201 * 11 9 7 15 15 N 1.46507 * 109.47182 * 239.99855 * 2 1 3 16 16 C 1.34780 * 119.99478 * 85.00142 * 15 2 1 17 17 O 1.21587 * 120.00010 * 0.02562 * 16 15 2 18 18 C 1.47521 * 119.99504 * 180.02562 * 16 15 2 19 19 C 1.36596 * 125.76896 * 179.72072 * 18 16 15 20 20 N 1.34817 * 106.84097 * 179.89837 * 19 18 16 21 21 C 1.46494 * 126.59528 * 180.13127 * 20 19 18 22 22 C 1.53178 * 109.54725 * 35.06080 * 21 20 19 23 23 C 1.53096 * 109.15906 * 183.24199 * 22 21 20 24 24 O 1.42903 * 109.48744 * 57.47713 * 23 22 21 25 25 C 1.42906 * 114.09932 * 298.88639 * 24 23 22 26 26 C 1.53091 * 109.41019 * 61.15790 * 25 24 23 27 27 N 1.40209 * 106.80660 * 0.35383 * 20 19 18 28 28 N 1.28757 * 108.36891 * 359.77313 * 27 20 19 29 29 H 1.09003 * 109.47597 * 299.99676 * 1 2 3 30 30 H 1.09000 * 109.47350 * 59.99698 * 1 2 3 31 31 H 1.09003 * 109.47270 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46956 * 54.99604 * 4 2 1 33 33 H 1.08994 * 109.46813 * 294.99919 * 4 2 1 34 34 H 1.09001 * 109.47044 * 264.78659 * 6 5 4 35 35 H 1.08998 * 109.46786 * 24.78383 * 6 5 4 36 36 H 1.08996 * 109.47239 * 144.78470 * 6 5 4 37 37 H 0.97003 * 119.99495 * 179.97438 * 10 9 7 38 38 H 0.96993 * 119.99970 * 265.00278 * 15 2 1 39 39 H 1.08002 * 126.58140 * 0.03099 * 19 18 16 40 40 H 1.08996 * 109.54300 * 155.24570 * 21 20 19 41 41 H 1.08993 * 109.51976 * 303.06465 * 22 21 20 42 42 H 1.09004 * 109.51549 * 63.24921 * 22 21 20 43 43 H 1.09004 * 109.41083 * 297.49731 * 23 22 21 44 44 H 1.08997 * 109.48543 * 177.50462 * 23 22 21 45 45 H 1.08999 * 109.48047 * 301.17770 * 25 24 23 46 46 H 1.08993 * 109.48501 * 181.13902 * 25 24 23 47 47 H 1.09008 * 109.52154 * 182.48867 * 26 25 24 48 48 H 1.09000 * 109.57827 * 62.32911 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5612 7 6 4.2798 0.1648 1.7240 8 1 3.8655 1.1485 1.8881 9 6 5.6045 -0.0934 2.0488 10 7 6.0306 -1.3357 2.1359 11 14 6.7822 1.3223 2.3620 12 1 6.0610 2.6106 2.2029 13 1 7.3191 1.2233 3.7430 14 1 7.9028 1.2584 1.3896 15 7 2.0183 -0.6907 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8583 1.1616 -2.4116 18 6 2.6382 -0.7138 -3.5618 19 6 2.8082 -0.1515 -4.7950 20 7 3.2728 -1.1226 -5.6064 21 6 3.6065 -0.9887 -7.0266 22 6 4.1940 0.4019 -7.2861 23 6 4.4641 0.5616 -8.7845 24 8 3.2513 0.3570 -9.5120 25 6 2.6830 -0.9435 -9.3450 26 6 2.3393 -1.1629 -7.8694 27 7 3.3703 -2.2867 -4.8310 28 7 2.9887 -2.0093 -3.6329 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1584 2.1369 34 1 4.3666 -2.7317 1.3247 35 1 3.4368 -2.4279 -0.1623 36 1 5.0393 -1.6838 0.0529 37 1 6.9564 -1.5160 2.3625 38 1 2.2489 -1.6318 -1.1526 39 1 2.6105 0.8748 -5.0671 40 1 4.3358 -1.7501 -7.3031 41 1 3.4847 1.1632 -6.9618 42 1 5.1266 0.5123 -6.7326 43 1 5.2052 -0.1732 -9.0994 44 1 4.8409 1.5653 -8.9811 45 1 3.4008 -1.6980 -9.6671 46 1 1.7768 -1.0241 -9.9451 47 1 1.9466 -2.1706 -7.7327 48 1 1.5909 -0.4348 -7.5565 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498428476.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:19 Heat of formation + Delta-G solvation = 14.862421 kcal Electronic energy + Delta-G solvation = -29820.728456 eV Core-core repulsion = 25719.900477 eV Total energy + Delta-G solvation = -4100.827979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.37100 -40.67831 -40.25988 -38.07594 -36.50853 -35.80166 -33.24870 -32.68674 -32.40755 -32.19715 -31.18113 -28.02616 -27.42645 -26.68351 -25.24865 -24.63275 -23.43815 -23.41732 -21.97168 -21.36453 -21.19723 -19.33231 -18.76739 -17.66411 -17.32570 -17.15811 -16.95430 -16.91270 -16.48042 -15.91558 -15.85552 -15.76503 -15.48383 -15.29125 -14.99457 -14.90149 -14.82151 -14.47115 -13.70224 -13.52586 -13.47017 -13.41001 -13.21885 -12.81767 -12.78677 -12.75329 -12.61495 -12.47232 -12.44582 -12.30653 -12.26770 -11.99193 -11.85466 -11.77431 -11.51304 -11.26995 -11.15117 -10.75327 -10.65274 -10.43257 -9.94107 -8.77633 -7.82325 -5.27353 0.06881 0.60682 0.93974 1.42380 1.44518 1.54723 2.17454 2.32584 2.50226 2.86942 3.09706 3.15696 3.29836 3.42589 3.61398 3.70281 3.73512 3.78934 3.86544 4.08227 4.13282 4.14795 4.21001 4.39429 4.45035 4.50393 4.53120 4.59122 4.68211 4.75704 4.78003 4.79553 4.87770 4.93054 4.94397 5.01150 5.03493 5.17219 5.30424 5.37735 5.43364 5.59999 5.65961 5.71966 6.16124 6.31664 6.50667 6.87527 7.15183 7.20901 7.87798 8.29622 9.20506 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.002797 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.931445 B =10008.008819 C =10915.083318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.056 0.944 4 C 0.141 3.859 5 N -0.613 5.613 6 C 0.188 3.812 7 C -0.254 4.254 8 H 0.068 0.932 9 C -0.055 4.055 10 N -0.936 5.936 11 Si 0.961 3.039 12 H -0.269 1.269 13 H -0.289 1.289 14 H -0.296 1.296 15 N -0.688 5.688 16 C 0.598 3.402 17 O -0.575 6.575 18 C -0.118 4.118 19 C 0.107 3.893 20 N -0.342 5.342 21 C 0.142 3.858 22 C -0.169 4.169 23 C 0.068 3.932 24 O -0.396 6.396 25 C 0.067 3.933 26 C -0.162 4.162 27 N -0.084 5.084 28 N -0.224 5.224 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.005 0.995 35 H 0.029 0.971 36 H 0.006 0.994 37 H 0.246 0.754 38 H 0.405 0.595 39 H 0.226 0.774 40 H 0.126 0.874 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.074 0.926 46 H 0.116 0.884 47 H 0.088 0.912 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 0.548 -25.087 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.074 0.926 4 C 0.014 3.986 5 N -0.336 5.336 6 C 0.043 3.957 7 C -0.384 4.384 8 H 0.086 0.914 9 C -0.250 4.250 10 N -0.584 5.584 11 Si 0.790 3.210 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.223 1.223 15 N -0.338 5.338 16 C 0.383 3.617 17 O -0.455 6.455 18 C -0.258 4.258 19 C -0.051 4.051 20 N -0.127 5.127 21 C 0.042 3.958 22 C -0.207 4.207 23 C -0.009 4.009 24 O -0.315 6.315 25 C -0.010 4.010 26 C -0.200 4.200 27 N -0.063 5.063 28 N -0.097 5.097 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.023 0.977 35 H 0.047 0.953 36 H 0.025 0.975 37 H 0.055 0.945 38 H 0.242 0.758 39 H 0.242 0.758 40 H 0.144 0.856 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.091 0.909 44 H 0.136 0.864 45 H 0.092 0.908 46 H 0.134 0.866 47 H 0.106 0.894 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.326 -0.065 -25.180 26.521 hybrid contribution 1.075 0.878 0.724 1.565 sum -7.251 0.813 -24.456 25.521 Atomic orbital electron populations 1.22017 0.93193 1.02793 1.02506 1.21779 0.94563 0.96803 0.85159 0.92585 1.21259 0.83130 0.99178 0.95008 1.44066 1.01072 1.22237 1.66220 1.20473 0.93753 0.88275 0.93230 1.19496 0.93418 0.91059 1.34455 0.91380 1.25644 1.00039 0.98130 1.01162 1.70249 1.15442 1.18556 1.54125 0.85289 0.79099 0.79807 0.76816 1.19372 1.21611 1.22287 1.45886 1.64711 1.14366 1.08793 1.16998 0.76993 0.85367 0.82315 1.90727 1.53551 1.15791 1.85475 1.21522 1.15914 0.91836 0.96558 1.23549 0.94815 0.97684 0.89066 1.50897 1.42942 1.07426 1.11432 1.22069 0.99672 1.01501 0.72558 1.22738 1.03306 0.94286 1.00414 1.22674 0.86562 1.04378 0.87293 1.87986 1.40504 1.33625 1.69406 1.22691 1.00313 0.84890 0.93091 1.22675 0.96111 1.04411 0.96840 1.81885 1.22524 1.05783 0.96108 1.74623 1.08905 1.13773 1.12367 0.89985 0.93295 0.91210 0.91806 0.91267 0.97722 0.95265 0.97491 0.94460 0.75783 0.75770 0.85609 0.89440 0.89056 0.90899 0.86443 0.90826 0.86569 0.89355 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.48 71.98 0.68 -3.38 16 2 C 0.12 4.46 2.88 44.99 0.13 4.59 16 3 H 0.06 2.37 7.58 -2.39 -0.02 2.35 16 4 C 0.14 5.52 5.29 86.38 0.46 5.98 16 5 N -0.61 -30.82 2.78 -726.93 -2.02 -32.85 16 6 C 0.19 9.50 8.52 127.77 1.09 10.58 16 7 C -0.25 -14.25 9.67 84.03 0.81 -13.43 16 8 H 0.07 3.76 7.87 -2.91 -0.02 3.73 16 9 C -0.06 -3.18 5.06 84.86 0.43 -2.75 16 10 N -0.94 -56.80 10.67 21.65 0.23 -56.57 16 11 Si 0.96 46.86 29.58 68.60 2.03 48.88 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 15 N -0.69 -25.21 4.52 -445.71 -2.01 -27.22 16 16 C 0.60 22.25 7.78 86.69 0.67 22.92 16 17 O -0.58 -23.50 16.52 -3.99 -0.07 -23.57 16 18 C -0.12 -3.83 6.99 40.82 0.29 -3.54 16 19 C 0.11 2.58 10.40 83.85 0.87 3.45 16 20 N -0.34 -7.32 3.55 -325.98 -1.16 -8.48 16 21 C 0.14 1.79 3.31 45.11 0.15 1.94 16 22 C -0.17 -1.65 5.15 30.69 0.16 -1.49 16 23 C 0.07 0.50 6.84 72.01 0.49 0.99 16 24 O -0.40 -4.38 10.77 -148.98 -1.60 -5.98 16 25 C 0.07 0.48 6.84 72.01 0.49 0.98 16 26 C -0.16 -1.62 5.75 30.69 0.18 -1.44 16 27 N -0.08 -2.43 13.78 37.02 0.51 -1.92 16 28 N -0.22 -7.49 12.04 -50.00 -0.60 -8.09 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.06 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.07 2.64 8.04 -2.39 -0.02 2.62 16 34 H 0.00 0.25 7.40 -2.39 -0.02 0.23 16 35 H 0.03 1.26 5.76 -2.39 -0.01 1.24 16 36 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.40 14.69 5.89 -92.71 -0.55 14.14 16 39 H 0.23 4.08 7.27 -2.91 -0.02 4.06 16 40 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.09 0.89 7.08 -2.39 -0.02 0.87 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 44 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.47 389.55 2.63 -72.85 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.42 Total: 17.53 kcal Atomic # 6 Polarization: 18.50 SS G_CDS: 6.90 Total: 25.40 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -5.06 Total: -135.12 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.67 Total: -29.55 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -75.47 2.63 -72.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498428476.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.708 kcal (2) G-P(sol) polarization free energy of solvation -75.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds