Wall clock time and date at job start Tue Mar 31 2020 20:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47391 * 2 1 4 4 C 1.35039 * 124.88480 * 124.97250 * 3 2 1 5 5 C 1.35364 * 107.22937 * 179.76979 * 4 3 2 6 6 C 1.41503 * 105.50059 * 0.35492 * 5 4 3 7 7 C 1.47715 * 126.51753 * 179.90377 * 6 5 4 8 8 O 1.21571 * 119.99737 * 359.71116 * 7 6 5 9 9 N 1.34773 * 120.00051 * 179.71394 * 7 6 5 10 10 C 1.46500 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47297 * 324.99623 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00124 * 10 9 7 13 13 C 1.53006 * 109.46998 * 204.99984 * 10 9 7 14 14 H 1.08993 * 109.46955 * 300.00226 * 13 10 9 15 15 C 1.52997 * 109.47127 * 60.00214 * 13 10 9 16 16 N 1.46902 * 109.46626 * 179.97438 * 13 10 9 17 17 C 1.46907 * 110.99670 * 155.00338 * 16 13 10 18 18 C 1.50700 * 109.46887 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00159 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99561 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99515 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00474 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99632 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99996 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47030 * 90.00114 * 25 23 21 27 27 H 1.48492 * 109.47100 * 210.00199 * 25 23 21 28 28 H 1.48500 * 109.47005 * 330.00334 * 25 23 21 29 29 N 1.28468 * 124.88358 * 304.98008 * 3 2 1 30 30 H 1.09000 * 109.47012 * 60.00078 * 1 2 3 31 31 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47064 * 299.99544 * 1 2 3 33 33 H 1.09000 * 109.47566 * 240.00304 * 2 1 3 34 34 H 1.08997 * 109.47313 * 120.00348 * 2 1 3 35 35 H 1.07995 * 126.38437 * 0.03649 * 4 3 2 36 36 H 1.07993 * 127.24977 * 180.24234 * 5 4 3 37 37 H 0.97002 * 119.99920 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 39 39 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 40 40 H 1.09001 * 109.46832 * 180.02562 * 12 10 9 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 13 10 42 42 H 1.09002 * 109.47153 * 179.97438 * 15 13 10 43 43 H 1.09001 * 109.47289 * 299.99953 * 15 13 10 44 44 H 1.00902 * 110.99990 * 278.94758 * 16 13 10 45 45 H 1.09000 * 109.46588 * 299.99934 * 17 16 13 46 46 H 1.08994 * 109.47385 * 59.99624 * 17 16 13 47 47 H 0.97000 * 120.00246 * 359.97438 * 20 18 17 48 48 H 0.96993 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8745 1.8977 0.9077 5 6 3.0867 3.1908 0.5683 6 6 2.3006 3.4123 -0.5873 7 6 2.1868 4.6758 -1.3440 8 8 2.8035 5.6589 -0.9818 9 7 1.3993 4.7388 -2.4359 10 6 1.2860 5.9920 -3.1860 11 1 1.3328 6.8343 -2.4957 12 6 2.4360 6.0911 -4.1902 13 6 -0.0483 6.0196 -3.9344 14 1 -0.0952 5.1774 -4.6246 15 6 -1.1984 5.9206 -2.9302 16 7 -0.1621 7.2766 -4.6861 17 6 -1.0670 7.1238 -5.8332 18 6 -1.1579 8.4304 -6.5787 19 8 -0.5310 9.3941 -6.1922 20 7 -1.9359 8.5279 -7.6750 21 6 -2.0181 9.7164 -8.3535 22 1 -1.4600 10.5745 -8.0094 23 6 -2.8206 9.8171 -9.4835 24 7 -2.8999 10.9563 -10.1336 25 14 -3.7866 8.3331 -10.0783 26 1 -5.1244 8.3224 -9.4336 27 1 -3.9482 8.4062 -11.5526 28 1 -3.0553 7.0909 -9.7215 29 7 1.6937 2.2753 -0.8635 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.3120 1.3751 1.7455 36 1 3.7207 3.9038 1.0742 37 1 0.9069 3.9545 -2.7246 38 1 3.3866 6.0714 -3.6571 39 1 2.3891 5.2489 -4.8805 40 1 2.3520 7.0238 -4.7480 41 1 -1.1515 6.7628 -2.2398 42 1 -2.1489 5.9407 -3.4633 43 1 -1.1141 4.9881 -2.3720 44 1 -0.4626 8.0305 -4.0865 45 1 -0.6819 6.3518 -6.4994 46 1 -2.0573 6.8374 -5.4793 47 1 -2.4369 7.7571 -7.9843 48 1 -3.4597 11.0266 -10.9225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505703144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:00 Heat of formation + Delta-G solvation = 11.340745 kcal Electronic energy + Delta-G solvation = -28507.673150 eV Core-core repulsion = 24406.692460 eV Total energy + Delta-G solvation = -4100.980690 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00062 -39.79124 -38.55038 -37.20504 -35.04441 -34.51708 -33.83097 -31.68830 -31.44253 -30.79038 -30.09389 -29.48647 -26.48234 -25.39264 -24.07879 -23.40604 -22.31541 -21.73589 -20.71445 -20.08042 -19.36871 -18.43900 -18.13004 -17.02562 -16.44349 -16.30442 -15.87873 -15.33744 -15.08849 -14.85789 -14.77962 -14.49076 -14.10942 -14.03440 -13.90992 -13.62142 -13.40085 -13.27821 -13.03286 -12.93855 -12.72608 -12.55015 -12.31856 -12.11426 -12.02432 -11.99746 -11.59794 -11.54905 -11.26830 -11.22524 -11.14431 -10.67159 -10.58435 -10.20606 -9.95753 -9.63332 -9.55412 -9.42542 -9.13663 -8.56340 -8.17512 -8.10240 -6.29148 -3.80453 1.31069 1.82016 2.00904 2.99313 3.03553 3.07364 3.15894 3.28916 3.76441 3.83702 4.11168 4.19112 4.26016 4.37546 4.40681 4.52096 4.63350 4.83618 4.86184 4.99951 5.03239 5.14115 5.15073 5.24113 5.32394 5.42879 5.48061 5.48793 5.53210 5.60466 5.69152 5.75200 5.86910 5.95011 6.00488 6.03658 6.05825 6.14362 6.35869 6.43258 6.60326 7.09493 7.32070 7.57045 7.60468 7.62458 8.12646 8.16815 8.61807 8.97204 9.44498 9.84960 10.84041 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.001911 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.075585 B =14650.865702 C =15601.110439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.116 3.884 3 N -0.283 5.283 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.016 4.016 7 C 0.605 3.395 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.153 3.847 11 H 0.091 0.909 12 C -0.153 4.153 13 C 0.078 3.922 14 H 0.081 0.919 15 C -0.185 4.185 16 N -0.657 5.657 17 C 0.050 3.950 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.272 1.272 27 H -0.277 1.277 28 H -0.269 1.269 29 N -0.260 5.260 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.403 0.597 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.354 0.646 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -28.066 21.847 36.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.072 5.072 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.176 4.176 7 C 0.389 3.611 8 O -0.405 6.405 9 N -0.362 5.362 10 C 0.049 3.951 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.033 4.033 14 H 0.099 0.901 15 C -0.244 4.244 16 N -0.290 5.290 17 C -0.083 4.083 18 C 0.236 3.764 19 O -0.444 6.444 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 N -0.096 5.096 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.198 0.802 36 H 0.180 0.820 37 H 0.237 0.763 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.175 0.825 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.203 0.797 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.923 -27.261 21.039 35.125 hybrid contribution -1.439 -1.367 0.270 2.003 sum 5.484 -28.629 21.309 36.108 Atomic orbital electron populations 1.22082 0.92985 1.03497 1.04029 1.22021 0.96794 0.76716 1.04807 1.45630 1.32440 1.10378 1.18717 1.22884 0.99272 0.95562 0.98638 1.21803 1.04376 0.96112 0.98378 1.22015 1.02720 0.93187 0.99717 1.16840 0.79281 0.85368 0.79618 1.90815 1.45610 1.35571 1.68478 1.45908 1.47560 1.14767 1.27995 1.20916 0.94829 0.86047 0.93314 0.89076 1.22046 0.97038 1.03503 0.98519 1.21746 0.93138 0.93953 0.94487 0.90051 1.22540 0.99095 1.02636 1.00084 1.59992 1.53216 1.04980 1.10781 1.21727 0.95062 0.97881 0.93636 1.19707 0.83743 0.89653 0.83320 1.90578 1.46675 1.39033 1.68126 1.42206 1.42568 1.12593 1.25732 1.19436 1.26922 0.89593 1.07326 0.86261 1.25042 0.97740 0.96995 0.96449 1.69618 1.39250 1.24217 1.19080 0.86670 0.80788 0.82441 0.79470 1.19711 1.20204 1.19486 1.73433 1.22244 0.98086 1.15861 0.90672 0.90172 0.91804 0.88810 0.87862 0.80159 0.82020 0.76278 0.92965 0.93202 0.89406 0.92061 0.92326 0.92114 0.82517 0.89456 0.93672 0.79736 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.02 37.16 0.37 -0.15 16 2 C 0.12 0.34 7.12 -4.04 -0.03 0.31 16 3 N -0.28 -1.95 3.41 -61.33 -0.21 -2.15 16 4 C -0.02 -0.14 11.40 -17.17 -0.20 -0.33 16 5 C -0.18 -1.67 10.81 -39.36 -0.43 -2.09 16 6 C -0.02 -0.18 7.13 -82.76 -0.59 -0.77 16 7 C 0.60 7.88 7.79 -12.39 -0.10 7.78 16 8 O -0.53 -8.63 16.59 5.30 0.09 -8.55 16 9 N -0.71 -7.87 4.38 -54.79 -0.24 -8.11 16 10 C 0.15 1.89 2.34 -67.93 -0.16 1.73 16 11 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 12 C -0.15 -2.01 9.33 37.16 0.35 -1.66 16 13 C 0.08 0.90 2.22 -67.71 -0.15 0.75 16 14 H 0.08 0.86 7.80 -51.93 -0.41 0.46 16 15 C -0.18 -1.91 9.00 37.16 0.33 -1.57 16 16 N -0.66 -9.86 5.11 -107.99 -0.55 -10.41 16 17 C 0.05 0.80 5.97 -4.97 -0.03 0.77 16 18 C 0.45 10.14 7.82 -10.98 -0.09 10.05 16 19 O -0.56 -15.08 15.78 5.54 0.09 -14.99 16 20 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 21 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 22 H 0.12 3.88 7.39 -52.49 -0.39 3.49 16 23 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 24 N -0.88 -25.88 13.96 55.50 0.77 -25.11 16 25 Si 0.88 19.38 27.74 -169.99 -4.71 14.67 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 29 N -0.26 -2.49 11.36 33.42 0.38 -2.11 16 30 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.02 8.04 -51.93 -0.42 -0.40 16 35 H 0.18 0.44 8.06 -52.49 -0.42 0.02 16 36 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.40 3.75 8.11 -40.82 -0.33 3.42 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.31 7.60 -51.93 -0.39 0.91 16 41 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 42 H 0.06 0.60 7.45 -51.93 -0.39 0.21 16 43 H 0.06 0.56 7.44 -51.93 -0.39 0.17 16 44 H 0.35 5.65 8.17 -39.29 -0.32 5.33 16 45 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 46 H 0.05 0.63 7.43 -51.93 -0.39 0.24 16 47 H 0.37 7.69 5.76 -40.82 -0.24 7.46 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 402.93 15.07 6.07 6.07 Total: -1.00 -36.16 402.93 -6.76 -42.91 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -7.43 Total: 14.84 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -0.96 Total: 7.04 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: 0.10 Total: -62.00 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.18 Total: -23.54 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.67 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.16 -6.76 -42.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.255 kcal (2) G-P(sol) polarization free energy of solvation -36.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds