Wall clock time and date at job start Tue Mar 31 2020 20:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47391 * 2 1 4 4 C 1.35039 * 124.88480 * 124.97250 * 3 2 1 5 5 C 1.35364 * 107.22937 * 179.76979 * 4 3 2 6 6 C 1.41503 * 105.50059 * 0.35492 * 5 4 3 7 7 C 1.47715 * 126.51753 * 179.90377 * 6 5 4 8 8 O 1.21571 * 119.99737 * 359.71116 * 7 6 5 9 9 N 1.34773 * 120.00051 * 179.71394 * 7 6 5 10 10 C 1.46500 * 120.00050 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47297 * 324.99623 * 10 9 7 12 12 C 1.52997 * 109.47007 * 85.00124 * 10 9 7 13 13 C 1.53006 * 109.46998 * 204.99984 * 10 9 7 14 14 H 1.08993 * 109.46955 * 300.00226 * 13 10 9 15 15 C 1.52997 * 109.47127 * 60.00214 * 13 10 9 16 16 N 1.46902 * 109.46626 * 179.97438 * 13 10 9 17 17 C 1.46907 * 110.99670 * 155.00338 * 16 13 10 18 18 C 1.50700 * 109.46887 * 180.02562 * 17 16 13 19 19 O 1.21295 * 120.00159 * 359.97438 * 18 17 16 20 20 N 1.34780 * 119.99561 * 179.97438 * 18 17 16 21 21 C 1.37099 * 119.99515 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00474 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99632 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99996 * 179.97438 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47030 * 90.00114 * 25 23 21 27 27 H 1.48492 * 109.47100 * 210.00199 * 25 23 21 28 28 H 1.48500 * 109.47005 * 330.00334 * 25 23 21 29 29 N 1.28468 * 124.88358 * 304.98008 * 3 2 1 30 30 H 1.09000 * 109.47012 * 60.00078 * 1 2 3 31 31 H 1.09002 * 109.46975 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47064 * 299.99544 * 1 2 3 33 33 H 1.09000 * 109.47566 * 240.00304 * 2 1 3 34 34 H 1.08997 * 109.47313 * 120.00348 * 2 1 3 35 35 H 1.07995 * 126.38437 * 0.03649 * 4 3 2 36 36 H 1.07993 * 127.24977 * 180.24234 * 5 4 3 37 37 H 0.97002 * 119.99920 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.47153 * 299.99911 * 12 10 9 39 39 H 1.08996 * 109.46952 * 60.00083 * 12 10 9 40 40 H 1.09001 * 109.46832 * 180.02562 * 12 10 9 41 41 H 1.09004 * 109.47261 * 59.99697 * 15 13 10 42 42 H 1.09002 * 109.47153 * 179.97438 * 15 13 10 43 43 H 1.09001 * 109.47289 * 299.99953 * 15 13 10 44 44 H 1.00902 * 110.99990 * 278.94758 * 16 13 10 45 45 H 1.09000 * 109.46588 * 299.99934 * 17 16 13 46 46 H 1.08994 * 109.47385 * 59.99624 * 17 16 13 47 47 H 0.97000 * 120.00246 * 359.97438 * 20 18 17 48 48 H 0.96993 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8745 1.8977 0.9077 5 6 3.0867 3.1908 0.5683 6 6 2.3006 3.4123 -0.5873 7 6 2.1868 4.6758 -1.3440 8 8 2.8035 5.6589 -0.9818 9 7 1.3993 4.7388 -2.4359 10 6 1.2860 5.9920 -3.1860 11 1 1.3328 6.8343 -2.4957 12 6 2.4360 6.0911 -4.1902 13 6 -0.0483 6.0196 -3.9344 14 1 -0.0952 5.1774 -4.6246 15 6 -1.1984 5.9206 -2.9302 16 7 -0.1621 7.2766 -4.6861 17 6 -1.0670 7.1238 -5.8332 18 6 -1.1579 8.4304 -6.5787 19 8 -0.5310 9.3941 -6.1922 20 7 -1.9359 8.5279 -7.6750 21 6 -2.0181 9.7164 -8.3535 22 1 -1.4600 10.5745 -8.0094 23 6 -2.8206 9.8171 -9.4835 24 7 -2.8999 10.9563 -10.1336 25 14 -3.7866 8.3331 -10.0783 26 1 -5.1244 8.3224 -9.4336 27 1 -3.9482 8.4062 -11.5526 28 1 -3.0553 7.0909 -9.7215 29 7 1.6937 2.2753 -0.8635 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.3120 1.3751 1.7455 36 1 3.7207 3.9038 1.0742 37 1 0.9069 3.9545 -2.7246 38 1 3.3866 6.0714 -3.6571 39 1 2.3891 5.2489 -4.8805 40 1 2.3520 7.0238 -4.7480 41 1 -1.1515 6.7628 -2.2398 42 1 -2.1489 5.9407 -3.4633 43 1 -1.1141 4.9881 -2.3720 44 1 -0.4626 8.0305 -4.0865 45 1 -0.6819 6.3518 -6.4994 46 1 -2.0573 6.8374 -5.4793 47 1 -2.4369 7.7571 -7.9843 48 1 -3.4597 11.0266 -10.9225 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505703144.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:59 Heat of formation + Delta-G solvation = -18.086616 kcal Electronic energy + Delta-G solvation = -28508.949216 eV Core-core repulsion = 24406.692460 eV Total energy + Delta-G solvation = -4102.256756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.59563 -40.83001 -40.25037 -38.41153 -36.07964 -35.48606 -35.38722 -33.73512 -32.34826 -31.49078 -30.87832 -30.36801 -28.06405 -26.06258 -25.66658 -24.31219 -23.05600 -22.31026 -21.74683 -21.24201 -20.88598 -20.27121 -18.89660 -17.81087 -17.54285 -17.34169 -17.01828 -16.77904 -16.47399 -15.83582 -15.74965 -15.33429 -15.24533 -15.17040 -14.99719 -14.66968 -14.49658 -14.34901 -14.27505 -14.05255 -13.86909 -13.42433 -13.31411 -13.13905 -13.02318 -12.95139 -12.73155 -12.56362 -12.39849 -12.29650 -12.24351 -11.96973 -11.83847 -11.67431 -11.49465 -11.25516 -10.44142 -10.32300 -10.23266 -10.12862 -9.95420 -9.29232 -8.39674 -6.00617 0.54892 1.22280 1.31311 1.36941 1.46009 1.56079 1.98397 2.07666 2.24636 2.38629 2.81233 3.16889 3.33250 3.48378 3.64708 3.93642 3.99344 4.01940 4.08057 4.17469 4.22247 4.28886 4.39654 4.44567 4.47942 4.56469 4.60387 4.74793 4.79147 4.79721 4.83283 4.86369 4.90491 4.96946 5.06608 5.21836 5.25395 5.35255 5.39529 5.50458 5.55610 5.91937 5.92557 6.05717 6.34467 6.46320 6.61494 6.90152 6.93461 7.19443 7.41806 7.99173 8.78099 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.001911 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.075585 B =14650.865702 C =15601.110439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.001 3.999 5 C -0.208 4.208 6 C -0.048 4.048 7 C 0.602 3.398 8 O -0.575 6.575 9 N -0.696 5.696 10 C 0.159 3.841 11 H 0.065 0.935 12 C -0.145 4.145 13 C 0.088 3.912 14 H 0.105 0.895 15 C -0.178 4.178 16 N -0.675 5.675 17 C 0.065 3.935 18 C 0.448 3.552 19 O -0.614 6.614 20 N -0.591 5.591 21 C -0.328 4.328 22 H 0.053 0.947 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.967 3.033 26 H -0.257 1.257 27 H -0.277 1.277 28 H -0.229 1.229 29 N -0.267 5.267 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.140 0.860 35 H 0.226 0.774 36 H 0.158 0.842 37 H 0.414 0.586 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.346 0.654 45 H 0.117 0.883 46 H 0.081 0.919 47 H 0.390 0.610 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.929 -33.901 22.621 41.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.237 4.237 6 C -0.206 4.206 7 C 0.387 3.613 8 O -0.453 6.453 9 N -0.348 5.348 10 C 0.054 3.946 11 H 0.084 0.916 12 C -0.204 4.204 13 C -0.023 4.023 14 H 0.123 0.877 15 C -0.237 4.237 16 N -0.307 5.307 17 C -0.067 4.067 18 C 0.236 3.764 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.457 4.457 22 H 0.072 0.928 23 C -0.216 4.216 24 N -0.576 5.576 25 Si 0.786 3.214 26 H -0.181 1.181 27 H -0.202 1.202 28 H -0.152 1.152 29 N -0.105 5.105 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.158 0.842 35 H 0.242 0.758 36 H 0.176 0.824 37 H 0.251 0.749 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.165 0.835 45 H 0.135 0.865 46 H 0.099 0.901 47 H 0.226 0.774 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.481 -33.157 21.817 40.067 hybrid contribution -0.903 0.454 0.140 1.021 sum 4.578 -32.703 21.956 39.655 Atomic orbital electron populations 1.22065 0.93192 1.04523 1.02559 1.22476 0.96647 0.74750 1.07207 1.46124 1.31536 1.11167 1.17742 1.23462 0.97632 0.94438 0.98701 1.21998 1.05226 0.97841 0.98590 1.21827 1.04830 0.93093 1.00887 1.17193 0.78634 0.85699 0.79730 1.90781 1.47452 1.37321 1.69709 1.45718 1.47113 1.14612 1.27313 1.20732 0.95271 0.85906 0.92701 0.91628 1.21945 0.96799 1.03038 0.98594 1.21715 0.92809 0.92943 0.94813 0.87674 1.22473 0.98751 1.02847 0.99660 1.59941 1.53372 1.06329 1.11094 1.21656 0.97483 0.93919 0.93644 1.21026 0.81474 0.91436 0.82447 1.90561 1.48277 1.41786 1.69238 1.42016 1.43540 1.11676 1.26053 1.19002 1.27729 0.89992 1.09026 0.92842 1.26154 0.98423 1.01303 0.95721 1.69809 1.40434 1.27554 1.19844 0.85343 0.79198 0.78352 0.78477 1.18121 1.20169 1.15217 1.73368 1.22333 0.98006 1.16807 0.92677 0.87917 0.92686 0.87759 0.84179 0.75777 0.82436 0.74902 0.94362 0.91605 0.91414 0.93285 0.91298 0.90749 0.83495 0.86463 0.90106 0.77418 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.56 10.02 71.98 0.72 0.16 16 2 C 0.11 0.22 7.12 86.38 0.61 0.84 16 3 N -0.28 -3.03 3.41 -347.95 -1.19 -4.22 16 4 C 0.00 0.01 11.40 83.54 0.95 0.96 16 5 C -0.21 -3.77 10.81 22.41 0.24 -3.53 16 6 C -0.05 -1.07 7.13 42.46 0.30 -0.76 16 7 C 0.60 16.12 7.79 86.75 0.68 16.80 16 8 O -0.57 -19.89 16.59 -3.94 -0.07 -19.95 16 9 N -0.70 -15.11 4.38 -445.52 -1.95 -17.06 16 10 C 0.16 3.90 2.34 44.99 0.11 4.01 16 11 H 0.07 1.97 7.58 -2.39 -0.02 1.96 16 12 C -0.15 -3.87 9.33 71.98 0.67 -3.20 16 13 C 0.09 1.85 2.22 44.92 0.10 1.95 16 14 H 0.11 1.79 7.80 -2.39 -0.02 1.77 16 15 C -0.18 -3.28 9.00 71.98 0.65 -2.63 16 16 N -0.68 -19.52 5.11 -495.56 -2.53 -22.05 16 17 C 0.07 1.90 5.97 85.56 0.51 2.41 16 18 C 0.45 20.11 7.82 87.66 0.69 20.79 16 19 O -0.61 -34.37 15.78 -3.08 -0.05 -34.42 16 20 N -0.59 -27.73 5.09 -306.97 -1.56 -29.30 16 21 C -0.33 -19.37 10.16 84.04 0.85 -18.51 16 22 H 0.05 3.78 7.39 -2.91 -0.02 3.75 16 23 C -0.02 -0.99 5.50 84.93 0.47 -0.52 16 24 N -0.94 -56.92 13.96 21.66 0.30 -56.61 16 25 Si 0.97 38.66 27.74 68.60 1.90 40.57 16 26 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 27 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 29 N -0.27 -4.72 11.36 -48.17 -0.55 -5.27 16 30 H 0.05 0.42 8.08 -2.39 -0.02 0.40 16 31 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 32 H 0.05 0.29 8.14 -2.39 -0.02 0.28 16 33 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.14 -0.69 8.04 -2.39 -0.02 -0.71 16 35 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.79 16 37 H 0.41 7.05 8.11 -92.71 -0.75 6.30 16 38 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 2.08 7.60 -2.39 -0.02 2.06 16 41 H 0.05 1.03 8.13 -2.38 -0.02 1.01 16 42 H 0.07 1.15 7.45 -2.39 -0.02 1.14 16 43 H 0.07 1.18 7.44 -2.39 -0.02 1.16 16 44 H 0.35 11.09 8.17 -89.69 -0.73 10.36 16 45 H 0.12 2.82 8.06 -2.39 -0.02 2.80 16 46 H 0.08 1.87 7.43 -2.39 -0.02 1.85 16 47 H 0.39 14.97 5.76 -92.71 -0.53 14.43 16 48 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -88.06 402.93 0.78 -87.28 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -1.08 Total: 42.27 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 7.55 Total: 18.76 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -7.48 Total: -134.51 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.11 Total: -54.37 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.57 kcal Total: -88.06 0.78 -87.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703144.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.192 kcal (2) G-P(sol) polarization free energy of solvation -88.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds