Wall clock time and date at job start Tue Mar 31 2020 20:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47159 * 2 1 4 4 C 1.35038 * 124.88195 * 124.97772 * 3 2 1 5 5 C 1.35367 * 107.22572 * 179.76346 * 4 3 2 6 6 C 1.41505 * 105.50201 * 0.35606 * 5 4 3 7 7 C 1.47709 * 126.51335 * 179.89776 * 6 5 4 8 8 O 1.21571 * 120.00353 * 359.71544 * 7 6 5 9 9 N 1.34775 * 119.99933 * 179.71443 * 7 6 5 10 10 C 1.46503 * 120.00091 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46807 * 324.99746 * 10 9 7 12 12 C 1.52998 * 109.46969 * 85.00295 * 10 9 7 13 13 C 1.53002 * 109.46849 * 204.99890 * 10 9 7 14 14 H 1.09002 * 109.47070 * 65.00067 * 13 10 9 15 15 C 1.53000 * 109.47233 * 304.99693 * 13 10 9 16 16 N 1.46901 * 109.46860 * 185.00217 * 13 10 9 17 17 C 1.46903 * 110.99880 * 205.00557 * 16 13 10 18 18 C 1.50697 * 109.46959 * 180.02562 * 17 16 13 19 19 O 1.21293 * 120.00499 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00042 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99673 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99357 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00081 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47473 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47140 * 120.00336 * 25 23 21 28 28 H 1.48502 * 109.47120 * 239.99834 * 25 23 21 29 29 N 1.28472 * 124.88516 * 304.98032 * 3 2 1 30 30 H 1.09001 * 109.47175 * 59.99753 * 1 2 3 31 31 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46709 * 299.99764 * 1 2 3 33 33 H 1.09006 * 109.46985 * 240.00405 * 2 1 3 34 34 H 1.08990 * 109.47443 * 120.00649 * 2 1 3 35 35 H 1.08002 * 126.38408 * 0.03245 * 4 3 2 36 36 H 1.07999 * 127.24579 * 180.24304 * 5 4 3 37 37 H 0.97002 * 119.99909 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47805 * 60.00062 * 12 10 9 39 39 H 1.09003 * 109.46952 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47027 * 299.99535 * 12 10 9 41 41 H 1.09001 * 109.47194 * 179.97438 * 15 13 10 42 42 H 1.08992 * 109.47399 * 300.00166 * 15 13 10 43 43 H 1.09004 * 109.46724 * 60.00652 * 15 13 10 44 44 H 1.00892 * 111.00435 * 81.04393 * 16 13 10 45 45 H 1.09003 * 109.46525 * 299.99167 * 17 16 13 46 46 H 1.08991 * 109.47692 * 59.99249 * 17 16 13 47 47 H 0.97000 * 119.99778 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8745 1.8977 0.9077 5 6 3.0867 3.1908 0.5682 6 6 2.3006 3.4123 -0.5874 7 6 2.1868 4.6758 -1.3439 8 8 2.8035 5.6589 -0.9818 9 7 1.3992 4.7389 -2.4358 10 6 1.2867 5.9919 -3.1865 11 1 1.3342 6.8343 -2.4965 12 6 2.4368 6.0896 -4.1909 13 6 -0.0476 6.0200 -3.9348 14 1 -0.8668 6.0399 -3.2160 15 6 -0.1676 4.7713 -4.8106 16 7 -0.1092 7.2193 -4.7809 17 6 -1.5014 7.6109 -5.0385 18 6 -1.5245 8.8414 -5.9081 19 8 -0.4835 9.3432 -6.2767 20 7 -2.7018 9.3844 -6.2763 21 6 -2.7228 10.5042 -7.0670 22 1 -1.7959 10.9515 -7.3945 23 6 -3.9366 11.0638 -7.4471 24 7 -5.0643 10.5198 -7.0482 25 14 -3.9651 12.5890 -8.5250 26 1 -2.5729 13.0020 -8.8354 27 1 -4.6853 12.2889 -9.7885 28 1 -4.6600 13.6886 -7.8084 29 7 1.6937 2.2754 -0.8635 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 3.3120 1.3751 1.7454 36 1 3.7208 3.9038 1.0740 37 1 0.9068 3.9546 -2.7246 38 1 2.3893 5.2472 -4.8809 39 1 2.3533 7.0221 -4.7491 40 1 3.3873 6.0696 -3.6578 41 1 -1.1184 4.7911 -5.3433 42 1 0.6515 4.7514 -5.5293 43 1 -0.1219 3.8814 -4.1827 44 1 0.3926 7.0785 -5.6448 45 1 -2.0194 6.7975 -5.5468 46 1 -1.9998 7.8243 -4.0930 47 1 -3.5343 8.9829 -5.9818 48 1 -5.9117 10.9106 -7.3132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505703145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:02 Heat of formation + Delta-G solvation = 7.367612 kcal Electronic energy + Delta-G solvation = -28452.404305 eV Core-core repulsion = 24351.251327 eV Total energy + Delta-G solvation = -4101.152978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.97024 -39.80089 -38.39957 -37.23264 -35.01385 -34.41932 -33.75472 -31.52404 -31.16253 -30.76395 -30.06879 -28.97844 -26.37039 -25.52738 -24.47298 -23.68544 -22.46823 -21.72593 -20.17827 -19.75128 -19.28837 -18.23316 -17.86640 -17.05185 -16.42260 -16.03709 -15.82788 -15.52974 -15.06261 -14.80193 -14.69151 -14.47710 -14.23230 -13.99475 -13.90495 -13.72620 -13.44105 -13.23206 -13.02802 -12.78437 -12.68653 -12.29229 -12.15875 -12.11750 -11.99549 -11.82959 -11.52103 -11.36934 -11.19690 -11.04026 -10.88515 -10.75595 -10.32028 -10.20225 -10.16201 -9.60292 -9.49358 -9.39252 -9.07574 -8.43577 -8.03251 -7.93030 -6.39382 -3.79901 1.34240 1.85093 2.03923 3.05194 3.18522 3.29012 3.32433 3.36681 3.86815 3.93884 4.14448 4.28879 4.37167 4.40988 4.45114 4.54823 4.78120 4.85941 4.90984 5.03687 5.14953 5.17279 5.23279 5.29900 5.34867 5.44757 5.45132 5.50040 5.52579 5.69233 5.74458 5.86622 5.90553 6.02666 6.03891 6.09643 6.19103 6.29596 6.38935 6.44369 6.54226 7.21223 7.36536 7.58070 7.65219 7.68115 8.09354 8.16741 8.63994 9.20714 9.57173 10.08640 10.78516 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.001789 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.063625 B =15645.353972 C =16304.632694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.283 5.283 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.016 4.016 7 C 0.604 3.396 8 O -0.530 6.530 9 N -0.713 5.713 10 C 0.153 3.847 11 H 0.098 0.902 12 C -0.163 4.163 13 C 0.078 3.922 14 H 0.083 0.917 15 C -0.189 4.189 16 N -0.658 5.658 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 N -0.260 5.260 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.402 0.598 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.556 -26.238 15.586 32.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.072 5.072 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.176 4.176 7 C 0.388 3.612 8 O -0.404 6.404 9 N -0.366 5.366 10 C 0.049 3.951 11 H 0.116 0.884 12 C -0.221 4.221 13 C -0.033 4.033 14 H 0.101 0.899 15 C -0.248 4.248 16 N -0.291 5.291 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 N -0.097 5.097 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.198 0.802 36 H 0.180 0.820 37 H 0.239 0.761 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.174 0.826 45 H 0.062 0.938 46 H 0.105 0.895 47 H 0.225 0.775 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.799 -25.279 15.302 31.461 hybrid contribution -0.682 -0.420 -0.437 0.913 sum 10.117 -25.699 14.864 31.365 Atomic orbital electron populations 1.22085 0.92962 1.03496 1.04079 1.22020 0.96819 0.76715 1.04775 1.45632 1.32440 1.10375 1.18735 1.22884 0.99274 0.95569 0.98637 1.21806 1.04386 0.96103 0.98365 1.22022 1.02673 0.93189 0.99735 1.16871 0.79349 0.85365 0.79648 1.90815 1.45651 1.35520 1.68431 1.46067 1.47625 1.14921 1.27950 1.20928 0.94595 0.86107 0.93475 0.88392 1.22180 0.98042 1.02870 0.99038 1.21714 0.96977 0.88882 0.95717 0.89924 1.22615 1.02759 0.98662 1.00784 1.60016 1.13204 1.33140 1.22709 1.21706 0.89785 0.96573 1.00081 1.19807 0.84773 0.87202 0.85532 1.90529 1.32231 1.64492 1.59323 1.41870 1.06538 1.26298 1.45445 1.19762 0.94348 1.03301 1.25309 0.87843 1.25263 0.94712 0.99570 0.98503 1.69624 0.97575 1.41207 1.45992 0.85796 0.78556 0.80796 0.79177 1.19205 1.20826 1.20760 1.73431 1.22210 0.98112 1.15917 0.90661 0.90171 0.91767 0.88840 0.87866 0.80154 0.82006 0.76118 0.92879 0.89932 0.92486 0.91999 0.91623 0.92392 0.82649 0.93771 0.89536 0.77486 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.02 37.16 0.37 -0.21 16 2 C 0.12 0.38 7.12 -4.04 -0.03 0.35 16 3 N -0.28 -2.04 3.41 -61.33 -0.21 -2.25 16 4 C -0.02 -0.14 11.40 -17.16 -0.20 -0.34 16 5 C -0.18 -1.73 10.81 -39.36 -0.43 -2.16 16 6 C -0.02 -0.19 7.13 -82.77 -0.59 -0.78 16 7 C 0.60 8.21 7.79 -12.39 -0.10 8.11 16 8 O -0.53 -8.91 16.59 5.30 0.09 -8.82 16 9 N -0.71 -8.35 4.99 -54.79 -0.27 -8.62 16 10 C 0.15 1.98 2.63 -67.93 -0.18 1.81 16 11 H 0.10 1.51 7.58 -51.93 -0.39 1.12 16 12 C -0.16 -2.08 8.86 37.16 0.33 -1.76 16 13 C 0.08 0.98 2.64 -67.71 -0.18 0.80 16 14 H 0.08 1.02 7.80 -51.93 -0.40 0.61 16 15 C -0.19 -1.94 8.68 37.16 0.32 -1.62 16 16 N -0.66 -10.50 5.23 -107.99 -0.56 -11.07 16 17 C 0.05 0.90 5.97 -4.98 -0.03 0.87 16 18 C 0.44 10.47 7.82 -10.98 -0.09 10.38 16 19 O -0.58 -15.88 15.78 5.55 0.09 -15.79 16 20 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 N -0.26 -2.61 11.36 33.42 0.38 -2.23 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.04 8.04 -51.93 -0.42 -0.38 16 35 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 36 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.40 4.03 6.30 -40.82 -0.26 3.78 16 38 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 39 H 0.08 1.15 7.13 -51.93 -0.37 0.78 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 42 H 0.06 0.67 6.55 -51.93 -0.34 0.33 16 43 H 0.06 0.50 6.29 -51.93 -0.33 0.17 16 44 H 0.35 5.78 7.39 -39.30 -0.29 5.49 16 45 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 46 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 47 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 399.32 15.07 6.02 6.02 Total: -1.00 -35.17 399.32 -6.98 -42.15 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -7.12 Total: 15.45 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -1.03 Total: 7.40 kcal Atomic # 7 Polarization: -62.66 SS G_CDS: 0.00 Total: -62.66 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.18 Total: -24.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.17 -6.98 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.522 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds