Wall clock time and date at job start Tue Mar 31 2020 20:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47159 * 2 1 4 4 C 1.35038 * 124.88195 * 124.97772 * 3 2 1 5 5 C 1.35367 * 107.22572 * 179.76346 * 4 3 2 6 6 C 1.41505 * 105.50201 * 0.35606 * 5 4 3 7 7 C 1.47709 * 126.51335 * 179.89776 * 6 5 4 8 8 O 1.21571 * 120.00353 * 359.71544 * 7 6 5 9 9 N 1.34775 * 119.99933 * 179.71443 * 7 6 5 10 10 C 1.46503 * 120.00091 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.46807 * 324.99746 * 10 9 7 12 12 C 1.52998 * 109.46969 * 85.00295 * 10 9 7 13 13 C 1.53002 * 109.46849 * 204.99890 * 10 9 7 14 14 H 1.09002 * 109.47070 * 65.00067 * 13 10 9 15 15 C 1.53000 * 109.47233 * 304.99693 * 13 10 9 16 16 N 1.46901 * 109.46860 * 185.00217 * 13 10 9 17 17 C 1.46903 * 110.99880 * 205.00557 * 16 13 10 18 18 C 1.50697 * 109.46959 * 180.02562 * 17 16 13 19 19 O 1.21293 * 120.00499 * 359.97438 * 18 17 16 20 20 N 1.34782 * 119.99745 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00042 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99673 * 359.97438 * 21 20 18 23 23 C 1.38949 * 120.00330 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99357 * 0.02562 * 23 21 20 25 25 Si 1.86791 * 120.00081 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47473 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47140 * 120.00336 * 25 23 21 28 28 H 1.48502 * 109.47120 * 239.99834 * 25 23 21 29 29 N 1.28472 * 124.88516 * 304.98032 * 3 2 1 30 30 H 1.09001 * 109.47175 * 59.99753 * 1 2 3 31 31 H 1.09000 * 109.47431 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46709 * 299.99764 * 1 2 3 33 33 H 1.09006 * 109.46985 * 240.00405 * 2 1 3 34 34 H 1.08990 * 109.47443 * 120.00649 * 2 1 3 35 35 H 1.08002 * 126.38408 * 0.03245 * 4 3 2 36 36 H 1.07999 * 127.24579 * 180.24304 * 5 4 3 37 37 H 0.97002 * 119.99909 * 0.02562 * 9 7 6 38 38 H 1.08997 * 109.47805 * 60.00062 * 12 10 9 39 39 H 1.09003 * 109.46952 * 180.02562 * 12 10 9 40 40 H 1.09001 * 109.47027 * 299.99535 * 12 10 9 41 41 H 1.09001 * 109.47194 * 179.97438 * 15 13 10 42 42 H 1.08992 * 109.47399 * 300.00166 * 15 13 10 43 43 H 1.09004 * 109.46724 * 60.00652 * 15 13 10 44 44 H 1.00892 * 111.00435 * 81.04393 * 16 13 10 45 45 H 1.09003 * 109.46525 * 299.99167 * 17 16 13 46 46 H 1.08991 * 109.47692 * 59.99249 * 17 16 13 47 47 H 0.97000 * 119.99778 * 359.97438 * 20 18 17 48 48 H 0.97003 * 119.99448 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8745 1.8977 0.9077 5 6 3.0867 3.1908 0.5682 6 6 2.3006 3.4123 -0.5874 7 6 2.1868 4.6758 -1.3439 8 8 2.8035 5.6589 -0.9818 9 7 1.3992 4.7389 -2.4358 10 6 1.2867 5.9919 -3.1865 11 1 1.3342 6.8343 -2.4965 12 6 2.4368 6.0896 -4.1909 13 6 -0.0476 6.0200 -3.9348 14 1 -0.8668 6.0399 -3.2160 15 6 -0.1676 4.7713 -4.8106 16 7 -0.1092 7.2193 -4.7809 17 6 -1.5014 7.6109 -5.0385 18 6 -1.5245 8.8414 -5.9081 19 8 -0.4835 9.3432 -6.2767 20 7 -2.7018 9.3844 -6.2763 21 6 -2.7228 10.5042 -7.0670 22 1 -1.7959 10.9515 -7.3945 23 6 -3.9366 11.0638 -7.4471 24 7 -5.0643 10.5198 -7.0482 25 14 -3.9651 12.5890 -8.5250 26 1 -2.5729 13.0020 -8.8354 27 1 -4.6853 12.2889 -9.7885 28 1 -4.6600 13.6886 -7.8084 29 7 1.6937 2.2754 -0.8635 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8898 35 1 3.3120 1.3751 1.7454 36 1 3.7208 3.9038 1.0740 37 1 0.9068 3.9546 -2.7246 38 1 2.3893 5.2472 -4.8809 39 1 2.3533 7.0221 -4.7491 40 1 3.3873 6.0696 -3.6578 41 1 -1.1184 4.7911 -5.3433 42 1 0.6515 4.7514 -5.5293 43 1 -0.1219 3.8814 -4.1827 44 1 0.3926 7.0785 -5.6448 45 1 -2.0194 6.7975 -5.5468 46 1 -1.9998 7.8243 -4.0930 47 1 -3.5343 8.9829 -5.9818 48 1 -5.9117 10.9106 -7.3132 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505703145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:01 Heat of formation + Delta-G solvation = -20.055299 kcal Electronic energy + Delta-G solvation = -28453.593452 eV Core-core repulsion = 24351.251327 eV Total energy + Delta-G solvation = -4102.342125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.60146 -40.88438 -40.13536 -38.53266 -36.05736 -35.47889 -35.34826 -33.27821 -32.39983 -31.51134 -30.77665 -29.97256 -27.99218 -26.32362 -25.94612 -24.79565 -23.18569 -22.33632 -21.16891 -21.00254 -20.79228 -19.92898 -18.95848 -17.85755 -17.56438 -17.10381 -17.03529 -16.80011 -16.39755 -16.12180 -15.80241 -15.60274 -15.39790 -15.14001 -15.11794 -14.72779 -14.50889 -14.23186 -13.97859 -13.85668 -13.50922 -13.34650 -13.26863 -13.17891 -13.06947 -12.95408 -12.87843 -12.57400 -12.39752 -12.30182 -12.11335 -11.91466 -11.87178 -11.80045 -11.50689 -11.25974 -10.38342 -10.30297 -10.12533 -10.00607 -9.95175 -9.31755 -8.46378 -5.94755 0.53883 1.22085 1.36865 1.42116 1.55631 1.56660 2.06112 2.08506 2.30791 2.37603 2.98425 3.21098 3.34107 3.54697 3.75268 3.86486 3.94817 3.99141 4.07667 4.20816 4.27220 4.30957 4.39308 4.44106 4.46403 4.54082 4.62118 4.71287 4.74748 4.80015 4.83099 4.85304 4.90037 4.94666 5.01761 5.19931 5.25206 5.36765 5.40439 5.41968 5.48016 5.88688 5.92160 6.09552 6.40660 6.44559 6.60910 6.92593 7.13503 7.18088 7.57152 8.12648 8.71288 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.001789 C = 0.001717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.063625 B =15645.353972 C =16304.632694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.276 5.276 4 C 0.001 3.999 5 C -0.208 4.208 6 C -0.049 4.049 7 C 0.600 3.400 8 O -0.574 6.574 9 N -0.699 5.699 10 C 0.159 3.841 11 H 0.068 0.932 12 C -0.155 4.155 13 C 0.086 3.914 14 H 0.089 0.911 15 C -0.183 4.183 16 N -0.674 5.674 17 C 0.067 3.933 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.272 1.272 29 N -0.269 5.269 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.141 0.859 35 H 0.227 0.773 36 H 0.159 0.841 37 H 0.413 0.587 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.350 0.650 45 H 0.073 0.927 46 H 0.102 0.898 47 H 0.397 0.603 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.930 -29.214 16.340 34.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.066 5.066 4 C -0.142 4.142 5 C -0.236 4.236 6 C -0.207 4.207 7 C 0.386 3.614 8 O -0.451 6.451 9 N -0.352 5.352 10 C 0.054 3.946 11 H 0.086 0.914 12 C -0.213 4.213 13 C -0.025 4.025 14 H 0.107 0.893 15 C -0.242 4.242 16 N -0.307 5.307 17 C -0.065 4.065 18 C 0.226 3.774 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.197 1.197 29 N -0.107 5.107 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.159 0.841 35 H 0.243 0.757 36 H 0.177 0.823 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.170 0.830 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.231 0.769 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.129 -28.311 16.055 34.087 hybrid contribution -0.467 0.372 -0.596 0.843 sum 9.662 -27.939 15.460 33.361 Atomic orbital electron populations 1.22070 0.93268 1.04538 1.02529 1.22482 0.96590 0.74734 1.07261 1.46131 1.31522 1.11160 1.17744 1.23478 0.97576 0.94422 0.98681 1.22006 1.05205 0.97861 0.98511 1.21826 1.04857 0.93059 1.00964 1.17243 0.78693 0.85772 0.79720 1.90778 1.47463 1.37257 1.69627 1.45901 1.47224 1.14707 1.27368 1.20727 0.95158 0.85805 0.92936 0.91396 1.22087 0.97346 1.02937 0.98974 1.21671 0.96586 0.88689 0.95539 0.89313 1.22545 1.03042 0.97947 1.00628 1.59947 1.12293 1.35510 1.22920 1.21551 0.91220 0.94231 0.99540 1.20883 0.83525 0.88184 0.84854 1.90499 1.33526 1.66077 1.60758 1.41929 1.07359 1.26121 1.45683 1.19705 0.94000 1.05110 1.27403 0.90365 1.26037 0.94022 1.02065 0.99234 1.69679 0.97992 1.42170 1.46297 0.84867 0.78215 0.77372 0.77859 1.19878 1.19492 1.19695 1.73365 1.22339 0.98067 1.16935 0.92783 0.87854 0.92698 0.87716 0.84078 0.75661 0.82341 0.74878 0.90962 0.91312 0.93764 0.91627 0.91417 0.90352 0.83010 0.90962 0.87987 0.76948 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.02 71.98 0.72 -0.01 16 2 C 0.11 0.31 7.12 86.38 0.61 0.92 16 3 N -0.28 -3.28 3.41 -347.94 -1.19 -4.47 16 4 C 0.00 0.01 11.40 83.54 0.95 0.97 16 5 C -0.21 -3.93 10.81 22.41 0.24 -3.69 16 6 C -0.05 -1.14 7.13 42.46 0.30 -0.84 16 7 C 0.60 16.97 7.79 86.75 0.68 17.65 16 8 O -0.57 -20.55 16.59 -3.94 -0.07 -20.62 16 9 N -0.70 -16.49 4.99 -445.53 -2.22 -18.71 16 10 C 0.16 4.19 2.63 44.99 0.12 4.31 16 11 H 0.07 2.23 7.58 -2.39 -0.02 2.21 16 12 C -0.16 -4.07 8.86 71.98 0.64 -3.43 16 13 C 0.09 2.06 2.64 44.92 0.12 2.17 16 14 H 0.09 2.05 7.80 -2.39 -0.02 2.04 16 15 C -0.18 -3.37 8.68 71.98 0.62 -2.74 16 16 N -0.67 -21.35 5.23 -495.57 -2.59 -23.94 16 17 C 0.07 2.29 5.97 85.56 0.51 2.80 16 18 C 0.44 21.06 7.82 87.66 0.69 21.75 16 19 O -0.62 -34.99 15.78 -3.07 -0.05 -35.04 16 20 N -0.57 -29.74 5.29 -306.98 -1.62 -31.36 16 21 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 22 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 23 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 24 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 25 Si 0.99 43.57 29.55 68.60 2.03 45.59 16 26 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 29 N -0.27 -5.08 11.36 -48.18 -0.55 -5.63 16 30 H 0.05 0.48 8.08 -2.39 -0.02 0.46 16 31 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 34 H 0.14 -0.61 8.04 -2.39 -0.02 -0.63 16 35 H 0.23 0.15 8.06 -2.91 -0.02 0.12 16 36 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.41 7.90 6.30 -92.71 -0.58 7.32 16 38 H 0.07 1.59 6.56 -2.39 -0.02 1.57 16 39 H 0.07 2.00 7.13 -2.39 -0.02 1.98 16 40 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.20 7.45 -2.39 -0.02 1.18 16 42 H 0.07 1.24 6.55 -2.39 -0.02 1.23 16 43 H 0.08 1.13 6.29 -2.39 -0.02 1.12 16 44 H 0.35 11.47 7.39 -89.70 -0.66 10.81 16 45 H 0.07 2.10 7.44 -2.39 -0.02 2.08 16 46 H 0.10 3.21 8.05 -2.39 -0.02 3.19 16 47 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 48 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 Total: -1.00 -79.98 399.32 0.55 -79.44 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.97 Total: 43.29 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 7.49 Total: 21.22 kcal Atomic # 7 Polarization: -125.99 SS G_CDS: -7.89 Total: -133.88 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.11 Total: -55.66 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -79.98 0.55 -79.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.382 kcal (2) G-P(sol) polarization free energy of solvation -79.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds