Wall clock time and date at job start Tue Mar 31 2020 20:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47141 * 2 1 4 4 C 1.35032 * 124.88319 * 124.97196 * 3 2 1 5 5 C 1.35372 * 107.22758 * 179.76685 * 4 3 2 6 6 C 1.41500 * 105.50123 * 0.36132 * 5 4 3 7 7 C 1.47712 * 126.51792 * 179.90130 * 6 5 4 8 8 O 1.21570 * 119.99641 * 359.71302 * 7 6 5 9 9 N 1.34770 * 120.00094 * 179.71270 * 7 6 5 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47049 * 35.00040 * 10 9 7 12 12 C 1.52996 * 109.47249 * 275.00159 * 10 9 7 13 13 C 1.52997 * 109.47473 * 154.99855 * 10 9 7 14 14 H 1.09001 * 109.47289 * 60.00327 * 13 10 9 15 15 C 1.53006 * 109.47127 * 300.00373 * 13 10 9 16 16 N 1.46899 * 109.47254 * 180.02562 * 13 10 9 17 17 C 1.46903 * 110.99807 * 205.00073 * 16 13 10 18 18 C 1.50705 * 109.46848 * 179.97438 * 17 16 13 19 19 O 1.21284 * 119.99984 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99593 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99901 * 179.97438 * 20 18 17 22 22 H 1.08001 * 119.99727 * 0.02562 * 21 20 18 23 23 C 1.38948 * 120.00293 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99845 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00116 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47026 * 90.00067 * 25 23 21 27 27 H 1.48498 * 109.47025 * 209.99893 * 25 23 21 28 28 H 1.48494 * 109.47249 * 330.00369 * 25 23 21 29 29 N 1.28467 * 124.88678 * 304.98121 * 3 2 1 30 30 H 1.09000 * 109.47558 * 60.00223 * 1 2 3 31 31 H 1.09005 * 109.46663 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47228 * 299.99261 * 1 2 3 33 33 H 1.09008 * 109.47467 * 240.00578 * 2 1 3 34 34 H 1.09001 * 109.47922 * 120.00167 * 2 1 3 35 35 H 1.07995 * 126.38729 * 0.04707 * 4 3 2 36 36 H 1.07994 * 127.24900 * 180.24821 * 5 4 3 37 37 H 0.97005 * 120.00370 * 359.97438 * 9 7 6 38 38 H 1.09000 * 109.47380 * 180.02562 * 12 10 9 39 39 H 1.09001 * 109.46997 * 299.99913 * 12 10 9 40 40 H 1.09000 * 109.47054 * 59.99646 * 12 10 9 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 13 10 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 13 10 43 43 H 1.09000 * 109.47050 * 179.97438 * 15 13 10 44 44 H 1.00902 * 111.00121 * 81.04671 * 16 13 10 45 45 H 1.09000 * 109.47514 * 299.99609 * 17 16 13 46 46 H 1.08999 * 109.47620 * 60.00050 * 17 16 13 47 47 H 0.97001 * 120.00519 * 0.02562 * 20 18 17 48 48 H 0.96996 * 120.00219 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8743 1.8977 0.9077 5 6 3.0865 3.1909 0.5682 6 6 2.3004 3.4124 -0.5873 7 6 2.1865 4.6759 -1.3440 8 8 2.8033 5.6589 -0.9818 9 7 1.3989 4.7389 -2.4358 10 6 1.2855 5.9921 -3.1859 11 1 2.2433 6.5123 -3.1712 12 6 0.2150 6.8762 -2.5431 13 6 0.8933 5.6867 -4.6329 14 1 -0.0644 5.1666 -4.6478 15 6 1.9639 4.8026 -5.2758 16 7 0.7802 6.9434 -5.3852 17 6 -0.1246 6.7905 -6.5324 18 6 -0.2158 8.0971 -7.2778 19 8 0.4117 9.0606 -6.8917 20 7 -0.9938 8.1946 -8.3740 21 6 -1.0771 9.3834 -9.0519 22 1 -0.5190 10.2416 -8.7077 23 6 -1.8796 9.4842 -10.1818 24 7 -2.5582 8.4398 -10.6009 25 14 -1.9937 11.1041 -11.1049 26 1 -0.9418 11.1522 -12.1521 27 1 -3.3308 11.2183 -11.7408 28 1 -1.7991 12.2295 -10.1559 29 7 1.6936 2.2754 -0.8634 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.3119 1.3752 1.7454 36 1 3.7206 3.9039 1.0740 37 1 0.9071 3.9543 -2.7250 38 1 0.1303 7.8085 -3.1015 39 1 -0.7427 6.3560 -2.5579 40 1 0.4945 7.0938 -1.5123 41 1 2.9217 5.3228 -5.2610 42 1 2.0482 3.8702 -4.7177 43 1 1.6843 4.5847 -6.3065 44 1 1.6876 7.2704 -5.6815 45 1 0.2600 6.0181 -7.1982 46 1 -1.1152 6.5048 -6.1783 47 1 -1.4953 7.4240 -8.6830 48 1 -3.1187 8.5102 -11.3894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505703146.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:05 Heat of formation + Delta-G solvation = 4.027830 kcal Electronic energy + Delta-G solvation = -28429.944218 eV Core-core repulsion = 24328.646416 eV Total energy + Delta-G solvation = -4101.297802 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97172 -39.74369 -38.37910 -37.10205 -35.01301 -34.44857 -33.76807 -31.47540 -31.17198 -30.73942 -30.00894 -29.42480 -26.29843 -25.35578 -24.17083 -23.42911 -22.29057 -21.70538 -20.65083 -20.04267 -19.23949 -18.19802 -17.85959 -17.00000 -16.46562 -16.18041 -15.86214 -15.19311 -15.11047 -14.74294 -14.57138 -14.41787 -14.05879 -14.00944 -13.81774 -13.66727 -13.43635 -13.38512 -12.99771 -12.90025 -12.69194 -12.29171 -12.15180 -12.05044 -11.98304 -11.54684 -11.48252 -11.42529 -11.19997 -11.19142 -11.01312 -10.60639 -10.37295 -10.20052 -10.16146 -9.60395 -9.48488 -9.39581 -9.09129 -8.42862 -8.01647 -7.93007 -6.39479 -3.80077 1.34322 1.84787 2.03928 3.04043 3.19864 3.28400 3.32349 3.34888 3.86793 3.93871 4.14870 4.29054 4.36920 4.40920 4.47597 4.55075 4.70171 4.89958 4.99355 5.04382 5.17396 5.19729 5.22881 5.30255 5.35278 5.45949 5.52529 5.54033 5.60090 5.72981 5.76507 5.88673 5.99247 6.05810 6.07914 6.12931 6.18245 6.28802 6.38884 6.48374 6.64844 7.22209 7.36227 7.57672 7.64492 7.68597 8.08956 8.16401 8.63853 9.20499 9.56957 10.08535 10.78319 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025007 B = 0.001780 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.430994 B =15728.296128 C =16410.804554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.117 3.883 3 N -0.283 5.283 4 C -0.021 4.021 5 C -0.179 4.179 6 C -0.016 4.016 7 C 0.605 3.395 8 O -0.531 6.531 9 N -0.710 5.710 10 C 0.153 3.847 11 H 0.091 0.909 12 C -0.152 4.152 13 C 0.078 3.922 14 H 0.081 0.919 15 C -0.184 4.184 16 N -0.657 5.657 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.269 1.269 29 N -0.259 5.259 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.181 0.819 36 H 0.162 0.838 37 H 0.403 0.597 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.353 0.647 45 H 0.044 0.956 46 H 0.086 0.914 47 H 0.392 0.608 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.813 -22.651 21.535 31.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.072 5.072 4 C -0.164 4.164 5 C -0.207 4.207 6 C -0.176 4.176 7 C 0.389 3.611 8 O -0.406 6.406 9 N -0.362 5.362 10 C 0.049 3.951 11 H 0.109 0.891 12 C -0.211 4.211 13 C -0.033 4.033 14 H 0.099 0.901 15 C -0.243 4.243 16 N -0.290 5.290 17 C -0.080 4.080 18 C 0.227 3.773 19 O -0.465 6.465 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.194 1.194 29 N -0.096 5.096 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.121 0.879 35 H 0.198 0.802 36 H 0.180 0.820 37 H 0.237 0.763 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.173 0.827 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.278 -21.629 21.521 31.151 hybrid contribution 0.405 -0.535 -0.858 1.089 sum 6.683 -22.163 20.663 31.030 Atomic orbital electron populations 1.22083 0.92960 1.03498 1.04067 1.22023 0.96819 0.76706 1.04785 1.45632 1.32427 1.10381 1.18724 1.22881 0.99290 0.95566 0.98649 1.21801 1.04402 0.96104 0.98391 1.22018 1.02687 0.93192 0.99729 1.16838 0.79065 0.85316 0.79902 1.90810 1.46123 1.35650 1.67984 1.45914 1.47419 1.14829 1.28008 1.20918 1.00932 0.83773 0.89480 0.89140 1.22041 0.97414 1.01091 1.00517 1.21741 0.98614 0.90330 0.92639 0.90059 1.22537 0.99926 1.00697 1.01167 1.59999 1.17184 1.26654 1.25120 1.21692 0.97888 0.96648 0.91791 1.19807 0.84571 0.89672 0.83280 1.90531 1.48272 1.39179 1.68549 1.41862 1.41034 1.13364 1.23887 1.19708 1.25850 0.90356 1.06855 0.87909 1.25258 0.96355 0.98932 0.97461 1.69612 1.29603 1.29691 1.25512 0.85856 0.77385 0.81634 0.79411 1.20461 1.20958 1.19395 1.73435 1.22188 0.98087 1.15875 0.90633 0.90172 0.91800 0.88816 0.87879 0.80175 0.82040 0.76258 0.89433 0.93191 0.93028 0.92156 0.92180 0.92270 0.82706 0.93794 0.89588 0.77494 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.02 37.15 0.37 -0.21 16 2 C 0.12 0.38 7.12 -4.04 -0.03 0.35 16 3 N -0.28 -2.03 3.41 -61.33 -0.21 -2.24 16 4 C -0.02 -0.14 11.40 -17.17 -0.20 -0.34 16 5 C -0.18 -1.72 10.81 -39.36 -0.43 -2.14 16 6 C -0.02 -0.18 7.13 -82.77 -0.59 -0.78 16 7 C 0.60 8.10 7.79 -12.39 -0.10 8.00 16 8 O -0.53 -8.81 16.59 5.30 0.09 -8.72 16 9 N -0.71 -8.20 4.38 -54.80 -0.24 -8.44 16 10 C 0.15 1.97 2.34 -67.93 -0.16 1.81 16 11 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 12 C -0.15 -2.08 9.33 37.16 0.35 -1.73 16 13 C 0.08 0.96 2.22 -67.71 -0.15 0.81 16 14 H 0.08 0.94 7.80 -51.93 -0.41 0.53 16 15 C -0.18 -2.05 9.00 37.16 0.33 -1.72 16 16 N -0.66 -10.41 5.11 -107.99 -0.55 -10.96 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16 19 O -0.58 -15.82 15.78 5.55 0.09 -15.73 16 20 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 21 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.65 13.05 55.50 0.72 -23.93 16 25 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 N -0.26 -2.58 11.36 33.42 0.38 -2.20 16 30 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.09 0.24 8.14 -51.92 -0.42 -0.18 16 34 H 0.10 0.04 8.04 -51.93 -0.42 -0.37 16 35 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 36 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.40 3.97 8.11 -40.82 -0.33 3.64 16 38 H 0.09 1.35 7.60 -51.93 -0.39 0.95 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 42 H 0.06 0.60 7.44 -51.93 -0.39 0.21 16 43 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 44 H 0.35 5.90 8.17 -39.29 -0.32 5.58 16 45 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 46 H 0.09 1.37 8.06 -51.93 -0.42 0.95 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -34.86 406.05 -7.11 -41.96 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -7.48 Total: 15.11 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.95 Total: 7.21 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.05 Total: -62.15 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: 0.18 Total: -24.46 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.86 -7.11 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505703146.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.992 kcal (2) G-P(sol) polarization free energy of solvation -34.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds